TCONS_00036988 (transcript) - C. hemisphaerica

Overview
NameTCONS_00036988
Unique NameTCONS_00036988
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length660

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00036988 ID=TCONS_00036988|Name=TCONS_00036988|organism=Clytia hemisphaerica|type=transcript|length=660bp
ACAATGAACATGAATGGAATAATTTGCGACACAAGCATCATTTCTATGGG
GCACAAATCATCTAATTCAGGAATTCTTGTAGACAGCAAATTGTTTGCTT
GAGCCTGCACTggtaacttttctttttttattgctttATCACATGGGTGG
CAAATCCAGTATTTTTCTTCTGAATCACAATGTAAGTTGACAGCATCACA
TTCTTCAAACATTGGTAAGCCTTCATATTCTTTATGGAGGAACCGCTTGC
CGTTTCCCTTGTACTCCCATTTTAGACATATGTGACATTTGTTTGTCGGG
CCGTCTTGTGTAGCTGTTACAAATTTTTGCTTTACGATTTCAAAAGCTTT
AGTTAAAGTTATCAAAGGGTCAACCATGCTTGATCTTTGGACttcatcaa
attctttttgttccTCTAGTTTGCTAAGCTGTCGAAATTTCCCCTTTTTG
ATCcgattattttttttagcactttctttttcaaaaTCATTTTGATTTTC
CCTCAAATTTAGCATTCTTTTTCGTGCagatttttggttttctttttttt
ctaaatcattttgattttctcGAAAAAGCCTTTTCTTTGATTTATCAGAT
TTTCGACTTTCATctctttcaaaatcattttgattttccctcaaattttg
cattcttttt
Run BLAST on NCBI

transcript from alignment at sc0001550:9771..11176+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00036988 ID=TCONS_00036988|Name=TCONS_00036988|organism=Clytia hemisphaerica|type=transcript|length=1406bp|location=Sequence derived from alignment at sc0001550:9771..11176+ (Clytia hemisphaerica)
ACAATGAACATGAATGGAATAATTTGCGACACAAGCATCATTTCTATGGG
GCACAAATCATCTAATTCAGGAATTCTTGTAGACAGCAAATTGTTTGCTT
GAGCCTGCACTggtaacttttctttttttattgctttATCACATGGGTGA
CAAATCCAGTATTTTNTggtaacttttctttttttattgctttATCACAT
GGGTGGCAAATCCAGTATTTTTCTTCTGAATCACAATGTAAGTTGACAGC
ATCACATTCTTCAAACATTGGTAAGCCTTCATATTCTTTATGGAGGAACC
GCTTGCCGTTTCCCTTGTACTCCCATTTTAGACATATGTGACATTTGTTT
GTCGGGCCGTCTTGTGTAGCTGTTACAAATTTTTGCTTTACGATTTCAAA
AGCTTTAGTTAAAGTTATCAAAGGGTCAACCATGCTTGATCTTTGGACtt
catcaaattctttttgttccTCTAGTTTGCTAAGCTGTCGAAATTTCCCC
TTTTTGATCcgattattttttttagcactttctttttcaaaatctttttg
attttccctcaaattttgcattctttttcgcgcatatttttggttttctt
tcttttctacatcattttgattttcccgcaaattttgcattctttttcgt
gcagatttttggttttctttctttcctacatcattttgattttcccgcaa
attttgcattctttttcgtgcagatttttggttttctttcttttctaaat
cattttgattttccctcaaattttgcattctttttcgtgcagatttttgg
ttttctttcttttctaaatcattttgattttccctcaaattttgcattct
ttttcgtgcagatttttggttttctttcttttctacaTCATTTTGATTTT
CCCTCAAATTTAGCATTCTTTTTCGTGCagatttttggttttcttttttt
tctaaatcattttgattttctcGAAAAAGCCTTTTCTTTGATTTATCAGA
TTTTCGACTTTCATctctttcaaaatcattttgattttccctcaaatttt
gcattcttttttgtgcagatttttggttttctttcttttctaaatcattt
tgattttcccTCAAATTTAGCATTCTTTTTCGTGCagatttttggttttc
tttcttttctaaatcattttgattttccctcaaattttgcattctttttc
gtgcagatttttggttttctttcttttctacaTCATTTTGATTTTCCCTC
AAATTTAGCATTCTTTTTCGTGCagatttttggttttcttttttttctaa
atcattttgattttctcGAAAAAGCCTTTTCTTTGATTTATCAGATTTTC
GACTTTCATctctttcaaaatcattttgattttccctcaaattttgcatt
cttttt
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_021853XLOC_021853Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00036988-exon-sc0001550-1491911889:9771..9912TCONS_00036988-exon-sc0001550-1491911889:9771..9912Clytia hemisphaericaexon
TCONS_00036988-exon-sc0001550-1510915933:9771..9912TCONS_00036988-exon-sc0001550-1510915933:9771..9912Clytia hemisphaericaexon
TCONS_00036988-exon-sc0001550-1575043694:9771..9912TCONS_00036988-exon-sc0001550-1575043694:9771..9912Clytia hemisphaericaexon
TCONS_00036988-exon-sc0001550-1491911889:9969..10311TCONS_00036988-exon-sc0001550-1491911889:9969..10311Clytia hemisphaericaexon
TCONS_00036988-exon-sc0001550-1510915933:9969..10311TCONS_00036988-exon-sc0001550-1510915933:9969..10311Clytia hemisphaericaexon
TCONS_00036988-exon-sc0001550-1575043694:9969..10311TCONS_00036988-exon-sc0001550-1575043694:9969..10311Clytia hemisphaericaexon
TCONS_00036988-exon-sc0001550-1491911889:11002..11176TCONS_00036988-exon-sc0001550-1491911889:11002..11176Clytia hemisphaericaexon
TCONS_00036988-exon-sc0001550-1510915933:11002..11176TCONS_00036988-exon-sc0001550-1510915933:11002..11176Clytia hemisphaericaexon
TCONS_00036988-exon-sc0001550-1575043694:11002..11176TCONS_00036988-exon-sc0001550-1575043694:11002..11176Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001550supercontigsc0001550:9771..11176 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
8.03675e-09	2.69174e-08	7.93277e-09	2.12622e-08	0	0	0	0	0	4.98121e-08	9.04339e-08	7.22225e-08	2.64986e-08	9.63544e-10	9.39563e-09	1.35138	3.94965e-08	2.70524e-08	2.83379e-07	2.9511e-08	7.6818	2.57817e-07	2.17958	8.07868e-09	0	0	3.71007e-08	1.24482e-07	2.53204	2.06061e-07
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00036988 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top