TCONS_00036986 (transcript) - C. hemisphaerica

Overview
NameTCONS_00036986
Unique NameTCONS_00036986
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length549

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00036986 ID=TCONS_00036986|Name=TCONS_00036986|organism=Clytia hemisphaerica|type=transcript|length=549bp
ACAATGAACATGAATGGAATAATTTGCGACACAAGCATCATTTCTATGGG
GCACAAATCATCTAATTCAGGAATTCTTGTAGACAGCAAATTGTTTGCTT
GAGCCTGCACTggtaacttttctttttttattgctttATCACATGGGTGG
CAAATCCAGTATTTTTCTTCTGAATCACAATGTAAGTTGACAGCATCACA
TTCTTCAAACATTGGTAAGCCTTCATATTCTTTATGGAGGAACCGCTTGC
CGTTTCCCTTGTACTCCCATTTTAGACATATGTGACATTTGTTTGTCGGG
CCGTCTTGTGTAGCTGTTACAAATTTTTGCTTTACGATTTCAAAAGCTTT
AGTTAAAGTTATCAAAGGGTCAACCATGCTTGATCTTTGGACttcatcaa
attctttttgttccTCTAGTTTGCTAAGCTGTCGAAATTTCCCCTTTTTG
ATCcgattattttttttagcactttctttttcaaaatcattttgattttc
ccgcaaattttgcattctttttcgtgcagatttttggttttctttcttt
Run BLAST on NCBI

transcript from alignment at sc0001550:9771..10513+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00036986 ID=TCONS_00036986|Name=TCONS_00036986|organism=Clytia hemisphaerica|type=transcript|length=743bp|location=Sequence derived from alignment at sc0001550:9771..10513+ (Clytia hemisphaerica)
ACAATGAACATGAATGGAATAATTTGCGACACAAGCATCATTTCTATGGG
GCACAAATCATCTAATTCAGGAATTCTTGTAGACAGCAAATTGTTTGCTT
GAGCCTGCACTggtaacttttctttttttattgctttATCACATGGGTGA
CAAATCCAGTATTTTNTggtaacttttctttttttattgctttATCACAT
GGGTGGCAAATCCAGTATTTTTCTTCTGAATCACAATGTAAGTTGACAGC
ATCACATTCTTCAAACATTGGTAAGCCTTCATATTCTTTATGGAGGAACC
GCTTGCCGTTTCCCTTGTACTCCCATTTTAGACATATGTGACATTTGTTT
GTCGGGCCGTCTTGTGTAGCTGTTACAAATTTTTGCTTTACGATTTCAAA
AGCTTTAGTTAAAGTTATCAAAGGGTCAACCATGCTTGATCTTTGGACtt
catcaaattctttttgttccTCTAGTTTGCTAAGCTGTCGAAATTTCCCC
TTTTTGATCcgattattttttttagcactttctttttcaaaatctttttg
attttccctcaaattttgcattctttttcgcgcatatttttggttttctt
tcttttctacatcattttgattttcccgcaaattttgcattctttttcgt
gcagatttttggttttctttctttcctacatcattttgattttcccgcaa
attttgcattctttttcgtgcagatttttggttttctttcttt
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_021853XLOC_021853Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00036986-exon-sc0001550-1491911889:9771..9912TCONS_00036986-exon-sc0001550-1491911889:9771..9912Clytia hemisphaericaexon
TCONS_00036986-exon-sc0001550-1510915933:9771..9912TCONS_00036986-exon-sc0001550-1510915933:9771..9912Clytia hemisphaericaexon
TCONS_00036986-exon-sc0001550-1575043694:9771..9912TCONS_00036986-exon-sc0001550-1575043694:9771..9912Clytia hemisphaericaexon
TCONS_00036986-exon-sc0001550-1491911889:9969..10311TCONS_00036986-exon-sc0001550-1491911889:9969..10311Clytia hemisphaericaexon
TCONS_00036986-exon-sc0001550-1510915933:9969..10311TCONS_00036986-exon-sc0001550-1510915933:9969..10311Clytia hemisphaericaexon
TCONS_00036986-exon-sc0001550-1575043694:9969..10311TCONS_00036986-exon-sc0001550-1575043694:9969..10311Clytia hemisphaericaexon
TCONS_00036986-exon-sc0001550-1491911889:10450..10513TCONS_00036986-exon-sc0001550-1491911889:10450..10513Clytia hemisphaericaexon
TCONS_00036986-exon-sc0001550-1510915933:10450..10513TCONS_00036986-exon-sc0001550-1510915933:10450..10513Clytia hemisphaericaexon
TCONS_00036986-exon-sc0001550-1575043694:10450..10513TCONS_00036986-exon-sc0001550-1575043694:10450..10513Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001550supercontigsc0001550:9771..10513 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0211914	0	0.00123239	0.0167521	0.160451	0.0670298	0.155236	0.126267	0.0311474	0.121674	0.147431	0.0706511	0.0494493	0.0165387	0.0680731	0.0706649	0.140161	0.147925	5.68365e-08	0.0220044	0	0.0448361	0.0111516	0.022918	0.211351	0.279552	0	0	0	0.00150953
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00036986 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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