TCONS_00036975 (transcript) - C. hemisphaerica

Overview
NameTCONS_00036975
Unique NameTCONS_00036975
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length527

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00036975 ID=TCONS_00036975|Name=TCONS_00036975|organism=Clytia hemisphaerica|type=transcript|length=527bp
ACTGTGGAGTTTTTACACCTCTTGTCGATAGTGATCACAAAGCGGTCATT
TGCAAAATAAGATTGATTGCACGTTTTAAAATCCAGTCATCCATCCGGCA
AAATATGATCCGACTTAATAACAACTCGCTTCTCGATCAACAGATTGCTA
AACACTTTGCTCAGACTGTAGTACAGAATTACGACNATGACTAAACCGAA
CGGAACAAAATGTACATCATCTGAAGAAAATGCCGAAGTATTTAAAAATC
ACTTCGAAAAATTGTACAACAATCAAGCTACCTTCAATCCTGAAGTATTA
ACGTTTCTCGACCAATGCCCTATATTGACGCAATGCGAACAACGTCCAAC
AGATATCGATATCAAAAAAGCTTTACATCGTCTCAAAAACAAAGCCCCTG
GTGACTCTGGAATCACACCACTCATGCTGAAATCTTGTATCCACAACCAG
CAATGTTTCGTTTTACTTCGCGACATCATTCTCGAGGTTTGGGACAATGA
ATCTCCACCCGAATCCTGGGATACCGG
Run BLAST on NCBI

protein sequence of TCONS_00036975-protein

>TCONS_00036975-protein ID=TCONS_00036975-protein|Name=TCONS_00036975-protein|organism=Clytia hemisphaerica|type=polypeptide|length=113bp
MTKPNGTKCTSSEENAEVFKNHFEKLYNNQATFNPEVLTFLDQCPILTQC
EQRPTDIDIKKALHRLKNKAPGDSGITPLMLKSCIHNQQCFVLLRDIILE
VWDNESPPESWDT
Run BLAST on NCBI

transcript from alignment at sc0001545:42898..43424

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00036975 ID=TCONS_00036975|Name=TCONS_00036975|organism=Clytia hemisphaerica|type=transcript|length=527bp|location=Sequence derived from alignment at sc0001545:42898..43424 (Clytia hemisphaerica)
CCGGTATCCCAGGATTCGGGTGGAGATTCATTGTCCCAAACCTCGAGAAT
GATGTCGCGAAGTAAAACGAAACATTGCTGGTTGTGGATACAAGATTTCA
GCATGAGTGGTGTGATTCCAGAGTCACCAGGGGCTTTGTTTTTGAGACGA
TGTAAAGCTTTTTTGATATCGATATCTGTTGGACGTTGTTCGCATTGCGT
CAATATAGGGCATTGGTCGAGAAACGTTAATACTTCAGGATTGAAGGTAG
CTTGATTGTTGTACAATTTTTCGAAGTGATTTTTAAATACTTCGGCATTT
TCTTCAGATGATGTACATTTTGTTCCGTTCGGTTTAGTCATNGTCGTAAT
TCTGTACTACAGTCTGAGCAAAGTGTTTAGCAATCTGTTGATCGAGAAGC
GAGTTGTTATTAAGTCGGATCATATTTTGCCGGATGGATGACTGGATTTT
AAAACGTGCAATCAATCTTATTTTGCAAATGACCGCTTTGTGATCACTAT
CGACAAGAGGTGTAAAAACTCCACAGT

Coding sequence (CDS) from alignment at sc0001545:42898..43424

>TCONS_00036975 ID=TCONS_00036975|Name=TCONS_00036975|organism=Clytia hemisphaerica|type=CDS|length=339bp|location=Sequence derived from alignment at sc0001545:42898..43424 (Clytia hemisphaerica)
GGTATCCCAGGATTCGGGTGGAGATTCATTGTCCCAAACCTCGAGAATGA
TGTCGCGAAGTAAAACGAAACATTGCTGGTTGTGGATACAAGATTTCAGC
ATGAGTGGTGTGATTCCAGAGTCACCAGGGGCTTTGTTTTTGAGACGATG
TAAAGCTTTTTTGATATCGATATCTGTTGGACGTTGTTCGCATTGCGTCA
ATATAGGGCATTGGTCGAGAAACGTTAATACTTCAGGATTGAAGGTAGCT
TGATTGTTGTACAATTTTTCGAAGTGATTTTTAAATACTTCGGCATTTTC
TTCAGATGATGTACATTTTGTTCCGTTCGGTTTAGTCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_021844XLOC_021844Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00036975-proteinTCONS_00036975-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00036975-exon-sc0001545-1491911889:42898..43424TCONS_00036975-exon-sc0001545-1491911889:42898..43424Clytia hemisphaericaexon
TCONS_00036975-exon-sc0001545-1510915933:42898..43424TCONS_00036975-exon-sc0001545-1510915933:42898..43424Clytia hemisphaericaexon
TCONS_00036975-exon-sc0001545-1575043694:42898..43424TCONS_00036975-exon-sc0001545-1575043694:42898..43424Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001545supercontigsc0001545:42898..43424 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.746797	0.573457	1.29501	1.88823	0.501197	0.205565	0.220848	0.741748	0.546771	0.315444	0.599217	0.567591	0.438272	0.809951	0.464842	0.577643	0.619155	1.35698	0	0.419621	0.539338	0.196945	0	0.415909	1.27025	2.16744	0.458934	0	0	0.252324
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00036975 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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