TCONS_00036974 (transcript) - C. hemisphaerica

Overview
NameTCONS_00036974
Unique NameTCONS_00036974
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length378

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00036974 ID=TCONS_00036974|Name=TCONS_00036974|organism=Clytia hemisphaerica|type=transcript|length=378bp
CTTTTGGAAGTTGCTTACAAAATCCTTGCCATACTTATCCATGATCGTTT
ACAGCCACTTGTCGAATCTCTAGACCATGAAGCACAATGTGGCTTCCGCT
CAGGAAGGGGTTGTTTAGACGCTATTTTTGCTGTTAATATGGCTATGAAA
AAGCGTAGAGAACATAGTAAAGAAACATGGATTTTGTTCCTTGACTTAGT
CAAGGCCTTTGACCGAGTCCCGAGGGATATGTTGTGGGAAGTGTTAGAAA
AATTTGGCGCACCCATCAAGTTAATTCGACTGATAAAATCACTTCATGAT
AATTTCAAAGTAgattttgaaatagaaaattgcAAGCATTCAATCAACTG
CACCATCGGAGTTAAACAAGGGGACATN
Run BLAST on NCBI

protein sequence of TCONS_00036974-protein

>TCONS_00036974-protein ID=TCONS_00036974-protein|Name=TCONS_00036974-protein|organism=Clytia hemisphaerica|type=polypeptide|length=126bp
LLEVAYKILAILIHDRLQPLVESLDHEAQCGFRSGRGCLDAIFAVNMAMK
KRREHSKETWILFLDLVKAFDRVPRDMLWEVLEKFGAPIKLIRLIKSLHD
NFKVDFEIENCKHSINCTIGVKQGDX
Run BLAST on NCBI

transcript from alignment at sc0001545:42367..42744

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00036974 ID=TCONS_00036974|Name=TCONS_00036974|organism=Clytia hemisphaerica|type=transcript|length=378bp|location=Sequence derived from alignment at sc0001545:42367..42744 (Clytia hemisphaerica)
NATGTCCCCTTGTTTAACTCCGATGGTGCAGTTGATTGAATGCTTgcaat
tttctatttcaaaatcTACTTTGAAATTATCATGAAGTGATTTTATCAGT
CGAATTAACTTGATGGGTGCGCCAAATTTTTCTAACACTTCCCACAACAT
ATCCCTCGGGACTCGGTCAAAGGCCTTGACTAAGTCAAGGAACAAAATCC
ATGTTTCTTTACTATGTTCTCTACGCTTTTTCATAGCCATATTAACAGCA
AAAATAGCGTCTAAACAACCCCTTCCTGAGCGGAAGCCACATTGTGCTTC
ATGGTCTAGAGATTCGACAAGTGGCTGTAAACGATCATGGATAAGTATGG
CAAGGATTTTGTAAGCAACTTCCAAAAG

Coding sequence (CDS) from alignment at sc0001545:42367..42744

>TCONS_00036974 ID=TCONS_00036974|Name=TCONS_00036974|organism=Clytia hemisphaerica|type=CDS|length=378bp|location=Sequence derived from alignment at sc0001545:42367..42744 (Clytia hemisphaerica)
NATGTCCCCTTGTTTAACTCCGATGGTGCAGTTGATTGAATGCTTgcaat
tttctatttcaaaatcTACTTTGAAATTATCATGAAGTGATTTTATCAGT
CGAATTAACTTGATGGGTGCGCCAAATTTTTCTAACACTTCCCACAACAT
ATCCCTCGGGACTCGGTCAAAGGCCTTGACTAAGTCAAGGAACAAAATCC
ATGTTTCTTTACTATGTTCTCTACGCTTTTTCATAGCCATATTAACAGCA
AAAATAGCGTCTAAACAACCCCTTCCTGAGCGGAAGCCACATTGTGCTTC
ATGGTCTAGAGATTCGACAAGTGGCTGTAAACGATCATGGATAAGTATGG
CAAGGATTTTGTAAGCAACTTCCAAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_021843XLOC_021843Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00036974-exon-sc0001545-1491911889:42367..42744TCONS_00036974-exon-sc0001545-1491911889:42367..42744Clytia hemisphaericaexon
TCONS_00036974-exon-sc0001545-1510915933:42367..42744TCONS_00036974-exon-sc0001545-1510915933:42367..42744Clytia hemisphaericaexon
TCONS_00036974-exon-sc0001545-1575043694:42367..42744TCONS_00036974-exon-sc0001545-1575043694:42367..42744Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00036974-proteinTCONS_00036974-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001545supercontigsc0001545:42367..42744 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.504902	0.230235	1.29726	0.25599	1.49189	1.15309	1.07958	1.71422	0.370271	0.783138	0	0	0.482569	0.345012	0.572621	0.15686	0.90051	0.221636	0.251083	0.266383	0.20297	0.297005	0.540519	0.477215	1.23385	3.43724	0.333839	0	0	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000477RT_dom
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00036974 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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