TCONS_00036973 (transcript) - C. hemisphaerica

Overview
NameTCONS_00036973
Unique NameTCONS_00036973
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length447

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00036973 ID=TCONS_00036973|Name=TCONS_00036973|organism=Clytia hemisphaerica|type=transcript|length=447bp
ATAAGCggtggtttttaaaaattttatccGACCAGAGCGTAAACTTATTT
CGCGCGAAAAGTGGGAAACCGATTACCAGCCAAGCTGGGAAAGAAGTTGG
AAATGTGGTGGCTGTGAGAGAAGGAAAAGATGAAGGGCAGATTATTgTGA
TGTTTCAACATGCAACAAATGCTGTGAAATTACAAATGTGCGATTTTGAA
TGGACAGAAAACGAGGATTGTCAGCCGTTCGAAAAATGTGTTTGCGATGC
ACAGAGATTCATCGAAAAATTCAATTCGCTTTTAAAACCTCGATCGGGAA
ACGGAACATCTCCTATTCCAAGCAAACGACCTTTAGCAACAGCTGTCGCT
AGTTCCTTATCAAAAACACGCAAACAAGACGAAGCACAAGGATCAGGAAC
AGAGACTATGGATGTTTTCTACAGTAAATTGAAGACGGAAGGAAAAA
Run BLAST on NCBI

protein sequence of TCONS_00036973-protein

>TCONS_00036973-protein ID=TCONS_00036973-protein|Name=TCONS_00036973-protein|organism=Clytia hemisphaerica|type=polypeptide|length=148bp
KRWFLKILSDQSVNLFRAKSGKPITSQAGKEVGNVVAVREGKDEGQIIVM
FQHATNAVKLQMCDFEWTENEDCQPFEKCVCDAQRFIEKFNSLLKPRSGN
GTSPIPSKRPLATAVASSLSKTRKQDEAQGSGTETMDVFYSKLKTEGK
Run BLAST on NCBI

transcript from alignment at sc0001545:22412..23547+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00036973 ID=TCONS_00036973|Name=TCONS_00036973|organism=Clytia hemisphaerica|type=transcript|length=1136bp|location=Sequence derived from alignment at sc0001545:22412..23547+ (Clytia hemisphaerica)
ATAAGCggtggtttttaaaaattttatccGACCAGAGCGTAAACTTATTT
CGCGCGAAAAGTGGGAAACCGATTACCAGCCAAGCTGGGAAAGAAGTTGG
AAATGTGGTGGCTGTGAGAGAAGGAAAAGATGAAGGGCAGATTATTGTNC
ATTGCAAGCCAAGCCGGAAAAGAAGTTGGAAATGTGGTAACGGTGAGGGA
AGGAAAAGATGAAGGGCAGATCAGATtattgtaagtatttttttgaatta
tattttttttcaaatacgtAAGtcaatattttataatttttcttttatca
ataGCCACAGTCCCCCGAAGTTGGTCCATTTTATCTGTTTTGCCCGTTTT
TGACATATAAGCCTACTTTAGAGGGCTGTGACTTTTGATAGAAGAAATAT
ATGAAAGAATTAAATACATACTTGAAATCAGCGAAGTTCAAAGATGAATT
GAATTAGTTTGGCTCATTAGAAAAACAAACTTcattttgttcttcttctt
ttttcattttcaagttcTCCTACTCAtagttatcttttcaacgagttatg
ttttttaataatgtttttttccttcaaGAGCAATTAACCAAACTGCGNTC
ATTTTCAAGTTCTCTTACTCATAGTTATCTTTTCAACGTTATGActttta
ataatgttttttcCTTCAAGAGCAATTAACCAAACTGTGCGGACTGCAAG
GTACAGCAAAATACacacaaaatgctgaaaataataaCACGCGTTAAGGG
AggatataataaaaatattcttatgaaCATCATGAACGTCAACAAAGCGT
GGCACGTTGACTTAAGgttcttttttacttttaaggTGATGTTTCAACAT
GCAACAAATGCTGTGAAATTACAAATGTGCGATTTTGAATGGACAGAAAA
CGAGGATTGTCAGCCGTTCGAAAAATGTGTTTGCGATGCACAGAGATTCA
TCGAAAAATTCAATTCGCTTTTAAAACCTCGATCGGGAAACGGAACATCT
CCTATTCCAAGCAAACGACCTTTAGCAACAGCTGTCGCTAGTTCCTTATC
AAAAACACGCAAACAAGACGAAGCACAAGGATCAGGAACAGAGACTATGG
ATGTTTTCTACAGTAAATTGAAGACGGAAGGAAAAA

Coding sequence (CDS) from alignment at sc0001545:22412..23547+

>TCONS_00036973 ID=TCONS_00036973|Name=TCONS_00036973|organism=Clytia hemisphaerica|type=CDS|length=888bp|location=Sequence derived from alignment at sc0001545:22412..23547+ (Clytia hemisphaerica)
AAGCggtggtttttaaaaattttatccGACCAGAGCGTAAACTTATTTCG
CGCGAAAAGTGGGAAACCGATTACCAGCCAAGCTGGGAAAGAAGTTGGAA
ATGTGGTGGCTGTGAGAGAAGGAAAAGATGAAGGGCAGATTATTgTGATG
TTTCAACATGCAACAAATGCTGTGAAATTACAAATGTGCGATTTTGAATG
GACAGAAAACGAGGATTGTCAGCCGTTCGAAAAATGTGTTTGCGATGCAC
AGAGATTCATCGAAAAATTCAATTCGCTTTTAAAACCTCGATCGGGAAAC
GGAACATCTCCTATTCCAAGCAAACGACCTTTAGCAACAGCTGTCGCTAG
TTCCTTATCAAAAACACGCAAACAAGACGAAGCACAAGGATCAGGAACAG
AGACTATGGATGTTTTCTACAGTAAATTGAAGACGGAAGGAAAAAAGCgg
tggtttttaaaaattttatccGACCAGAGCGTAAACTTATTTCGCGCGAA
AAGTGGGAAACCGATTACCAGCCAAGCTGGGAAAGAAGTTGGAAATGTGG
TGGCTGTGAGAGAAGGAAAAGATGAAGGGCAGATTATTgTGATGTTTCAA
CATGCAACAAATGCTGTGAAATTACAAATGTGCGATTTTGAATGGACAGA
AAACGAGGATTGTCAGCCGTTCGAAAAATGTGTTTGCGATGCACAGAGAT
TCATCGAAAAATTCAATTCGCTTTTAAAACCTCGATCGGGAAACGGAACA
TCTCCTATTCCAAGCAAACGACCTTTAGCAACAGCTGTCGCTAGTTCCTT
ATCAAAAACACGCAAACAAGACGAAGCACAAGGATCAGGAACAGAGACTA
TGGATGTTTTCTACAGTAAATTGAAGACGGAAGGAAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_021842XLOC_021842Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00036973-proteinTCONS_00036973-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00036973-exon-sc0001545-1491911889:22412..22557TCONS_00036973-exon-sc0001545-1491911889:22412..22557Clytia hemisphaericaexon
TCONS_00036973-exon-sc0001545-1510915933:22412..22557TCONS_00036973-exon-sc0001545-1510915933:22412..22557Clytia hemisphaericaexon
TCONS_00036973-exon-sc0001545-1575043694:22412..22557TCONS_00036973-exon-sc0001545-1575043694:22412..22557Clytia hemisphaericaexon
TCONS_00036973-exon-sc0001545-1491911889:23247..23547TCONS_00036973-exon-sc0001545-1491911889:23247..23547Clytia hemisphaericaexon
TCONS_00036973-exon-sc0001545-1510915933:23247..23547TCONS_00036973-exon-sc0001545-1510915933:23247..23547Clytia hemisphaericaexon
TCONS_00036973-exon-sc0001545-1575043694:23247..23547TCONS_00036973-exon-sc0001545-1575043694:23247..23547Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001545supercontigsc0001545:22412..23547 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0.165125	0.603072	0.476556	0.191648	0.179419	0.628076	0.155595	0.302048	0.595663	0.297418	0	0.338579	0.54502	0.895227	0.802882	0	0	0.144126	0.632695	0	0	2.08059	2.85674	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00036973 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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