TCONS_00036972 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00036972
Unique Name	TCONS_00036972
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	713

Sequence

The following sequences are available for this feature:

transcript sequence
protein sequence
transcript from alignment at sc0001545:8164..10158+
coding sequence from alignment at sc0001545:8164..10158+

transcript sequence

>TCONS_00036972 ID=TCONS_00036972|Name=TCONS_00036972|organism=Clytia hemisphaerica|type=transcript|length=713bp
CTTCTCGAACATTTCAAGCATGAAGAGCCTGTATTGCAAAATCCCAAAAA
CAAAGACAAGCCATTCATATTATGCCCATTCGAGTGTTGTGGTGAGTGCA
GATCAGAGCTCTCAAGACATCTCCAAGAAAAACAACATCTTTCATACCCA
AAATGGACCAAGGAGCAGGCTTCGCGTGAACAATCAGTCAGGCTGAGGAT
GTACAGGTGGCTGACTTGTGAATCTTATAACGGTGTACACATCCCCAAGG
TTTGCAAGGTACATAACATTTGTGTCAAACGCATGGACAGCCACATTCGT
ACCCAACATAGAGATCTCAAAACAGATGCTGAAAAGAAGGCTTTTAAAAT
AAAGTATACGTGTGATGCAGAAGTCACCATTGTTCCACTTGAAATCGGTG
CCAATGATTGTGAGTGGGAGTCAGATGTGGATTCAACGGAACAGATCACC
GTTGACTCCAAACCAAACAAAACGCTTAAATACGTGAAGAAAATTGGTAA
CAGGATGAgaaaatgtaataaaagaattacAGAAGATTTCAAGTATTATT
ACGATAGAACAGAAGAACTGATGTTTGATTTCGAGAGGTGGTGCATTTCA
CTAGGAAAATCGAAAGACCAGGCGGTGCAAACGAAAAAACGTGTGATTTT
CATTTGGAAGTGTTTAGACCCAAATATGagcatcgaaaacaaccaactGA
AACACAAGGAAGT

Run BLAST on NCBI

protein sequence of TCONS_00036972-protein

>TCONS_00036972-protein ID=TCONS_00036972-protein|Name=TCONS_00036972-protein|organism=Clytia hemisphaerica|type=polypeptide|length=237bp
LLEHFKHEEPVLQNPKNKDKPFILCPFECCGECRSELSRHLQEKQHLSYP
KWTKEQASREQSVRLRMYRWLTCESYNGVHIPKVCKVHNICVKRMDSHIR
TQHRDLKTDAEKKAFKIKYTCDAEVTIVPLEIGANDCEWESDVDSTEQIT
VDSKPNKTLKYVKKIGNRMRKCNKRITEDFKYYYDRTEELMFDFERWCIS
LGKSKDQAVQTKKRVIFIWKCLDPNMSIENNQLKHKE

Run BLAST on NCBI

transcript from alignment at sc0001545:8164..10158+

Legend: exonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00036972 ID=TCONS_00036972|Name=TCONS_00036972|organism=Clytia hemisphaerica|type=transcript|length=1995bp|location=Sequence derived from alignment at sc0001545:8164..10158+ (Clytia hemisphaerica)
CTTCTCGAACATTTCAAGCATGAAGAGCCTGTATTGCAAAATCGTAAGTT
TAATACATTTATAATATACCTATTGAATTTTATATTTgggaagttttttg
aaaagtttaagaATTAAGGTTTTGAATAAAGTTCTCCTGTGATTTCAATA
TCTTTACATTTGAAATTTATTCGTTTTCTTTGTAGCCAAAAACAAAGACA
AGCCATTCATATTATGCCCATTCGAGTGTTGTGGTGAGTGCAGATCAGAG
CTCTCAAGACATCTCCAAGAAAAACAACATCTTTCATACCCAAAATGGAC
CAAGGAGCAGGCTTCGCGTGAACAATCAGTCAGGCTGAGGATGTACAGGT
AATATTTTCACCATGGTTTTTGAATTTATCACCATCGCAACAGGCCTtat
tttttagagaaattttaCAAGGCCAATTTTGTTCGTGAAATCGCCGATAG
ATTCACGGCTACATTTTCTGACCAGTGAACTAAAATTATCACAGTAAAAA
CTTTGATCTGGATACTCTGAATTTGCCATGTAAAGAAATTTGCCATGATA
AAAACACCCTGTAAATTTGGCGGTAGATTGTCATAAGTTACTTagtgaaa
taaaatatttactGCATTTGCCCCGTGAAAAAAATTTCGACCGAAACTAA
TTTAAAATTTGCTTCGATATTGCAAAATACCACGGTGAAatcttcagatt
tttttttcacgtgAAAGGTGCAAAAATTACTGCGTCTCGTTTAAAGCcat
tgtttttaaaacatttcagGTGGCTGACTTGTGAATCTTATAACGGTGTA
CACATCCCCAAGGTTTGCAAGGTACATAACATTTGTGTCAAACGCATGGA
CAGCCACATTCGTACCCAACATAGAGATCTCAAAACAGATGCTGAAAAGA
AGGCTTTTAAAATAAAGTATACGTGTGATGCAGAAGTCACCATTGTTCCA
CTTGAAATCGGTGCCAATGATTGTGAGTGGGAGTCAGATGTGGATTCAAC
GGAACAGGTAAGTTTTTTATCGCTTATGAGTtcttataaatcttttttct
ttaacgTCACTGAAACTTTCCATTCGATTCATTTGACATTCTAGTAATGG
CTCTTCCTCGTCCCTCCTAGATTCGCGTGACCAATGATACCGGAAAAGGA
ATGTTTGAAACATTGCAttagttttataaatttagattcatttattttat
tcatttatgTTCAAGTGAGCCGAGgtcgaaaatgaaaaaaactaccATTT
TTATTCACACACGCTACTCTTGACAAACTCGTTCCCAAACCGCAAGAAAA
ACCATCTCCAACTCCCTTCATTTGTTGGAAACTTCATTTAGTCTTATGTA
AATCGCAATAATCGCTACTTTAGGATTAAAAAAATGGGGTAAACCTAAAA
TAGGTATTGCTTCGACATAGCCTGGAATCGTAATAAGCGCTACTTTAGGA
TTAAGAAATGGGGTAAACCTAAAATAGGTATTGCTTCGACATAGTCTTTC
TATTCTACGAAGAAACTACTTTTTCTTAAGCTAATTGCCTTATAATGTTC
ATTTTAAGACATTAATGTTAAAAACtgaatcaattttttaaatattacag
ATCACCGTTGACTCCAAACCAAACAAAACGCTTAAATACGTGAAGAAAAT
TGGTAACAGGATGAgaaaatgtaataaaagaattacAGAAGATTTCAAGT
ATTATTACGATAGAACAGAAGAACTGATGTTTGATTTCGAGAGGTATGAA
ATCATTTATTTATCAAAGATATACACTATGTATTTATCTTAATTGGCATA
AATGTTTACGCGTAACATTCCAAACACtgatttgaaaaatctccaACAAA
ATGCTACTTTTATGATTAGGTGGTGCATTTCACTAGGAAAATCGAAAGAC
CAGGCGGTGCAAACGAAAAAACGTGTGATTTTCATTTGGAAGTGTTTAGA
CCCAAATATGagcatcgaaaacaaccaactGAAACACAAGGAAGT

Coding sequence (CDS) from alignment at sc0001545:8164..10158+

>TCONS_00036972 ID=TCONS_00036972|Name=TCONS_00036972|organism=Clytia hemisphaerica|type=CDS|length=3555bp|location=Sequence derived from alignment at sc0001545:8164..10158+ (Clytia hemisphaerica)
CTTCTCGAACATTTCAAGCATGAAGAGCCTGTATTGCAAAATCCCAAAAA
CAAAGACAAGCCATTCATATTATGCCCATTCGAGTGTTGTGGTGAGTGCA
GATCAGAGCTCTCAAGACATCTCCAAGAAAAACAACATCTTTCATACCCA
AAATGGACCAAGGAGCAGGCTTCGCGTGAACAATCAGTCAGGCTGAGGAT
GTACAGGTGGCTGACTTGTGAATCTTATAACGGTGTACACATCCCCAAGG
TTTGCAAGGTACATAACATTTGTGTCAAACGCATGGACAGCCACATTCGT
ACCCAACATAGAGATCTCAAAACAGATGCTGAAAAGAAGGCTTTTAAAAT
AAAGTATACGTGTGATGCAGAAGTCACCATTGTTCCACTTGAAATCGGTG
CCAATGATTGTGAGTGGGAGTCAGATGTGGATTCAACGGAACAGATCACC
GTTGACTCCAAACCAAACAAAACGCTTAAATACGTGAAGAAAATTGGTAA
CAGGATGAgaaaatgtaataaaagaattacAGAAGATTTCAAGTATTATT
ACGATAGAACAGAAGAACTGATGTTTGATTTCGAGAGGTGGTGCATTTCA
CTAGGAAAATCGAAAGACCAGGCGGTGCAAACGAAAAAACGTGTGATTTT
CATTTGGAAGTGTTTAGACCCAAATATGagcatcgaaaacaaccaactGA
AACACAAGGAACTTCTCGAACATTTCAAGCATGAAGAGCCTGTATTGCAA
AATCCCAAAAACAAAGACAAGCCATTCATATTATGCCCATTCGAGTGTTG
TGGTGAGTGCAGATCAGAGCTCTCAAGACATCTCCAAGAAAAACAACATC
TTTCATACCCAAAATGGACCAAGGAGCAGGCTTCGCGTGAACAATCAGTC
AGGCTGAGGATGTACAGGTGGCTGACTTGTGAATCTTATAACGGTGTACA
CATCCCCAAGGTTTGCAAGGTACATAACATTTGTGTCAAACGCATGGACA
GCCACATTCGTACCCAACATAGAGATCTCAAAACAGATGCTGAAAAGAAG
GCTTTTAAAATAAAGTATACGTGTGATGCAGAAGTCACCATTGTTCCACT
TGAAATCGGTGCCAATGATTGTGAGTGGGAGTCAGATGTGGATTCAACGG
AACAGATCACCGTTGACTCCAAACCAAACAAAACGCTTAAATACGTGAAG
AAAATTGGTAACAGGATGAgaaaatgtaataaaagaattacAGAAGATTT
CAAGTATTATTACGATAGAACAGAAGAACTGATGTTTGATTTCGAGAGGT
GGTGCATTTCACTAGGAAAATCGAAAGACCAGGCGGTGCAAACGAAAAAA
CGTGTGATTTTCATTTGGAAGTGTTTAGACCCAAATATGagcatcgaaaa
caaccaactGAAACACAAGGAACTTCTCGAACATTTCAAGCATGAAGAGC
CTGTATTGCAAAATCCCAAAAACAAAGACAAGCCATTCATATTATGCCCA
TTCGAGTGTTGTGGTGAGTGCAGATCAGAGCTCTCAAGACATCTCCAAGA
AAAACAACATCTTTCATACCCAAAATGGACCAAGGAGCAGGCTTCGCGTG
AACAATCAGTCAGGCTGAGGATGTACAGGTGGCTGACTTGTGAATCTTAT
AACGGTGTACACATCCCCAAGGTTTGCAAGGTACATAACATTTGTGTCAA
ACGCATGGACAGCCACATTCGTACCCAACATAGAGATCTCAAAACAGATG
CTGAAAAGAAGGCTTTTAAAATAAAGTATACGTGTGATGCAGAAGTCACC
ATTGTTCCACTTGAAATCGGTGCCAATGATTGTGAGTGGGAGTCAGATGT
GGATTCAACGGAACAGATCACCGTTGACTCCAAACCAAACAAAACGCTTA
AATACGTGAAGAAAATTGGTAACAGGATGAgaaaatgtaataaaagaatt
acAGAAGATTTCAAGTATTATTACGATAGAACAGAAGAACTGATGTTTGA
TTTCGAGAGGTGGTGCATTTCACTAGGAAAATCGAAAGACCAGGCGGTGC
AAACGAAAAAACGTGTGATTTTCATTTGGAAGTGTTTAGACCCAAATATG
agcatcgaaaacaaccaactGAAACACAAGGAACTTCTCGAACATTTCAA
GCATGAAGAGCCTGTATTGCAAAATCCCAAAAACAAAGACAAGCCATTCA
TATTATGCCCATTCGAGTGTTGTGGTGAGTGCAGATCAGAGCTCTCAAGA
CATCTCCAAGAAAAACAACATCTTTCATACCCAAAATGGACCAAGGAGCA
GGCTTCGCGTGAACAATCAGTCAGGCTGAGGATGTACAGGTGGCTGACTT
GTGAATCTTATAACGGTGTACACATCCCCAAGGTTTGCAAGGTACATAAC
ATTTGTGTCAAACGCATGGACAGCCACATTCGTACCCAACATAGAGATCT
CAAAACAGATGCTGAAAAGAAGGCTTTTAAAATAAAGTATACGTGTGATG
CAGAAGTCACCATTGTTCCACTTGAAATCGGTGCCAATGATTGTGAGTGG
GAGTCAGATGTGGATTCAACGGAACAGATCACCGTTGACTCCAAACCAAA
CAAAACGCTTAAATACGTGAAGAAAATTGGTAACAGGATGAgaaaatgta
ataaaagaattacAGAAGATTTCAAGTATTATTACGATAGAACAGAAGAA
CTGATGTTTGATTTCGAGAGGTGGTGCATTTCACTAGGAAAATCGAAAGA
CCAGGCGGTGCAAACGAAAAAACGTGTGATTTTCATTTGGAAGTGTTTAG
ACCCAAATATGagcatcgaaaacaaccaactGAAACACAAGGAACTTCTC
GAACATTTCAAGCATGAAGAGCCTGTATTGCAAAATCCCAAAAACAAAGA
CAAGCCATTCATATTATGCCCATTCGAGTGTTGTGGTGAGTGCAGATCAG
AGCTCTCAAGACATCTCCAAGAAAAACAACATCTTTCATACCCAAAATGG
ACCAAGGAGCAGGCTTCGCGTGAACAATCAGTCAGGCTGAGGATGTACAG
GTGGCTGACTTGTGAATCTTATAACGGTGTACACATCCCCAAGGTTTGCA
AGGTACATAACATTTGTGTCAAACGCATGGACAGCCACATTCGTACCCAA
CATAGAGATCTCAAAACAGATGCTGAAAAGAAGGCTTTTAAAATAAAGTA
TACGTGTGATGCAGAAGTCACCATTGTTCCACTTGAAATCGGTGCCAATG
ATTGTGAGTGGGAGTCAGATGTGGATTCAACGGAACAGATCACCGTTGAC
TCCAAACCAAACAAAACGCTTAAATACGTGAAGAAAATTGGTAACAGGAT
GAgaaaatgtaataaaagaattacAGAAGATTTCAAGTATTATTACGATA
GAACAGAAGAACTGATGTTTGATTTCGAGAGGTGGTGCATTTCACTAGGA
AAATCGAAAGACCAGGCGGTGCAAACGAAAAAACGTGTGATTTTCATTTG
GAAGTGTTTAGACCCAAATATGagcatcgaaaacaaccaactGAAACACA
AGGAA

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_021841	XLOC_021841	Clytia hemisphaerica	gene

The following polypeptide feature(s) derives from this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00036972-protein	TCONS_00036972-protein	Clytia hemisphaerica	polypeptide

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0001545	supercontig	sc0001545:8164..10158 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.379712	0.300054	0.452502	0.593078	0.0593183	0.146951	0.0713169	0.468809	0.374526	0.291712	0	0	0	0	0	0	0	0	0	0	0.302309	0.404705	0	0	0	0

Blast

The following BLAST results are available for this feature:

BLAST of TCONS_00036972 vs. Swiss-Prot (Human)

BLAST of TCONS_00036972 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0


Match Name	E-value	Identity	Description

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TCONS_00036972 (transcript) - C. hemisphaerica