TCONS_00036970 (transcript) - C. hemisphaerica

Overview
NameTCONS_00036970
Unique NameTCONS_00036970
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length232

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00036970 ID=TCONS_00036970|Name=TCONS_00036970|organism=Clytia hemisphaerica|type=transcript|length=232bp
AAAAgcacaaatacataaactcgctattaccAGATGGATATATCAACGTT
AAATTAAAAGTAAACCTAAACtatgaatgataaatttttatgtacatttt
ctaaaatcaaataataattataatctgatatacgttttttttcaagaaaa
ggaTACGATTTCGTAGGATAATTATTTATAGCTTAAAGTTACTGCAACTT
TTCCAAGCAAACGTTCGCAAGTATTGTCTTCC
Run BLAST on NCBI

transcript from alignment at sc0001544:12454..12685

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00036970 ID=TCONS_00036970|Name=TCONS_00036970|organism=Clytia hemisphaerica|type=transcript|length=232bp|location=Sequence derived from alignment at sc0001544:12454..12685 (Clytia hemisphaerica)
GGAAGACAATACTTGCGAACGTTTGCTTGGAAAAGTTGCAGTAACTTTAA
GCTATAAATAATTATCCTACGAAATCGTAtccttttcttgaaaaaaaacg
tatatcagattataattattatttgattttagaaaatgtacataaaaatt
tatcattcataGTTTAGGTTTACTTTTAATTTAACGTTGATATATCCATC
TggtaatagcgagtttatgtatttgtgcTTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_021839XLOC_021839Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00036970-exon-sc0001544-1491911889:12454..12685TCONS_00036970-exon-sc0001544-1491911889:12454..12685Clytia hemisphaericaexon
TCONS_00036970-exon-sc0001544-1510915933:12454..12685TCONS_00036970-exon-sc0001544-1510915933:12454..12685Clytia hemisphaericaexon
TCONS_00036970-exon-sc0001544-1575043694:12454..12685TCONS_00036970-exon-sc0001544-1575043694:12454..12685Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001544supercontigsc0001544:12454..12685 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
20.4592	18.9533	11.5824	11.3316	24.8313	8.72089	9.20621	8.61875	3.44811	5.3388	11.4003	2.72514	1.36067	1.41307	2.32348	2.49345	5.37551	3.14842	0	0	1.97811	4.34183	11.729	9.59705	4.39322	18.624	0	1.49698	7.94782	13.8816
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00036970 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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