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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00036969 ID=TCONS_00036969|Name=TCONS_00036969|organism=Clytia hemisphaerica|type=transcript|length=402bp
AAGTGTACCATACAGCATTCACCCATCACCAAAGATgcacaaagaaccaa
aaagatCTTAACCATATCATTGTGGCCAGTCATCTTGACCaagaaatact
aaaatcaaCACAAAATATCTGTGGGTCTGTGATcaaaaccttcacactac
caattggcaaaaatttacaGCTCAAGACGGGTAAGGTCGTTATCGAATCC
TTACAGATACAAAACTAGTAACGATTGAACAAGTTCAAAGATATTTATTT
CCCTTTTCGAGTAGAAAGCAGTTgtattgaagtttttacaagatgctcac
ataattggtcattcaaaacaataataaaagtttttgtttgaatagttaac
aaccaatccaatgacaaaaattcttgtaaatgttcaacttgacccGTAGA
AG Run BLAST on NCBI transcript from alignment at sc0001544:40159..41699- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00036969 ID=TCONS_00036969|Name=TCONS_00036969|organism=Clytia hemisphaerica|type=transcript|length=1541bp|location=Sequence derived from alignment at sc0001544:40159..41699- (Clytia hemisphaerica)
AAGTGTACCAATTTCCCTAAGAGAGATACATAAAATGAAGCTATTAATTA
CGATCCCCAATAATACGAAAATAAATAAACCAATATCTATGGAAATTTCA
AAATTCTTGTACAAAGTAATGACAACACTGATGTTTTTTAAATTCTTTAC
AAAGCTTTATCCACCATCTTTGATCAGAGTCGGTCTTTTTTTATATGTCC
TGTTAAACCTTTTTAGAATTTAAAAATCGAAAAATTGAAATGAAAAAATT
AAATGAAGAAGAAAACGAAGAGTTTTTCGAAGAAGAGTATTTCACCTTTC
AAGGCCCTAATCTCGGTAAAAATCAAACATTTGGAATTTTTTTTGGTTCA
GGTGATGTATCTATTTAGTATCTAAAAATACAATTTCGGAAAGTTTTTGT
GTAAGTATCTTTCCTTTAAAATCTCCAAAAAACCTCATTTTGGCGATTTT
CCCCACTAAATTTGCATACGAAAACAGCTATAACTTGGGATGTAGCCAAA
TAGAAAATTTTTCCGAAAAAATCTAAATAAAGAAATTATTTGTCATTAAA
AAAAGTTTTAAACAATAAAATGATTTCCCCAAGGAGATTAGGCTTTTTTG
TGAAAAGTATACGAATAGCGTCGTTATGACGTTTTATTAAGGTCCATGCC
ACACTTATTCCTCAATTACTCATTATGTAATTACTTAAATTCATTTTTTC
AAAAGCAGTTTGTTCTTAAACATGTCAAAGCAGCGAAAACATAAGGTTTT
ATCTTCAAATTCTGAAATTGATTTTTCACTATGTCCAGAGCCTTTAATTT
CGGGGAAATTCTTCCAGCTGGCAAATCAGAACAGGTATTTGCAAATTTTA
GGTCGGTGGCTGCTTCTGAAAGGTCATACAATTGATCATTGGCATCATCA
TGATTATTTACGGGGAAGGTAGGTCTAGCGCTTTAGATTCACTTACAAGG
CTAGAGGTACCATAGGGTATCACTTTTTTACAATTTTTATTGATAGTTCT
ACCAGCAGGGTACCACTTTAACGATACGATTTTAACGATACGATTTTAAC
GATGCGATTTTAACGATAACGTAAAATCAAATTTTGGGTCTACGAATTTC
AGTCAAAACCGCAAAACTACACAAAAAATGTGTGGAGAAAAAAACTTACT
ACAGCATTCACCCATCACCAAAGATGCACAAAGAACCAAAAAGATCTTAA
CCATATCATTGTGGCCAGTCATCTTGACCAAGAAATACTAAAATCAACAC
AAAATATCTGTGGGTCTGTGATCAAAACCTTCACACTACCAATTGGCAAA
AATTTACAGCTCAAGACGGGTAAGGTCGTTATCGAATCCTTACAGATACA
AAACTAGTAACGATTGAACAAGTTCAAAGATATTTATTTCCCTTTTCGAG
TAGAAAGCAGTTGTATTGAAGTTTTTACAAGATGCTCACATAATTGGTCA
TTCAAAACAATAATAAAAGTTTTTGTTTGAATAGTTAACAACCAATCCAA
TGACAAAAATTCTTGTAAATGTTCAACTTGACCCGTAGAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00036969-exon-sc0001544-1575043694:41690..41699 | TCONS_00036969-exon-sc0001544-1575043694:41690..41699 | Clytia hemisphaerica | exon |
| TCONS_00036969-exon-sc0001544-1575043694:40159..40550 | TCONS_00036969-exon-sc0001544-1575043694:40159..40550 | Clytia hemisphaerica | exon |
| TCONS_00036969-exon-sc0001544-1510915933:41690..41699 | TCONS_00036969-exon-sc0001544-1510915933:41690..41699 | Clytia hemisphaerica | exon |
| TCONS_00036969-exon-sc0001544-1510915933:40159..40550 | TCONS_00036969-exon-sc0001544-1510915933:40159..40550 | Clytia hemisphaerica | exon |
| TCONS_00036969-exon-sc0001544-1491911889:41690..41699 | TCONS_00036969-exon-sc0001544-1491911889:41690..41699 | Clytia hemisphaerica | exon |
| TCONS_00036969-exon-sc0001544-1491911889:40159..40550 | TCONS_00036969-exon-sc0001544-1491911889:40159..40550 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001544 | supercontig | sc0001544:40159..41699 - |
Blast
The following BLAST results are available for this feature:
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