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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00036963 ID=TCONS_00036963|Name=TCONS_00036963|organism=Clytia hemisphaerica|type=transcript|length=421bp
CTTCTACgggtcaagttgaacatttacaagaatttttgtcattggattgg
ttgttaactattcaaacaaaaacttttattattgttttgaatgaccaatt
atgtgagcatcttgtaaaaacttcaatacAACTGCTTTCTACTCGAAAAG
GGAAATAAATATCTTTGAACTTGTTCAATCGTTACTAGTTTTGTATCTGT
AAGGATTCGATAACGACCTTACCCGTCTTGAGCtgtaaatttttgccaat
tggtagtgtgaaggttttgATCACAGACCCACAGATATTTTGTGttgatt
ttagtatttcttGGTCAAGATGACTGGCCACAATGATATGGTTAAGatct
ttttggttctttgtgcATCTTTGGTGATGGGTGAATGCTGTAGGAAATTG
GTACACTTTCCAGAACTACAC Run BLAST on NCBI transcript from alignment at sc0001544:40159..41712+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00036963 ID=TCONS_00036963|Name=TCONS_00036963|organism=Clytia hemisphaerica|type=transcript|length=1554bp|location=Sequence derived from alignment at sc0001544:40159..41712+ (Clytia hemisphaerica)
CTTCTACgggtcaagttgaacatttacaagaatttttgtcattggattgg
ttgttaactattcaaacaaaaacttttattattgttttgaatgaccaatt
atgtgagcatcttgtaaaaacttcaatacAACTGCTTTCTACTCGAAAAG
GGAAATAAATATCTTTGAACTTGTTCAATCGTTACTAGTTTTGTATCTGT
AAGGATTCGATAACGACCTTACCCGTCTTGAGCtgtaaatttttgccaat
tggtagtgtgaaggttttgATCACAGACCCACAGATATTTTGTGttgatt
ttagtatttcttGGTCAAGATGACTGGCCACAATGATATGGTTAAGatct
ttttggttctttgtgcATCTTTGGTGATGGGTGAATGCTGTAGTAAGTTT
TTTTCTCCACACATTTTTTGTGTAGTTTTGCGGTTTTGACTGAAATTCGT
AGACCCAAAATTTGATTTTACGTTATCGTTAAAATCGCATCGTTAAAATC
GTATCGTTAAAATCGTATCGTTAAAGTGGTACCCTGCTGGTAGAACTATc
aataaaaattgtaaaaaagtgataCCCTATGGTACCTCTAGCCTTGTAAG
TGAATCTAAAGCGCTAGACCTACCTTCCCCGTAAATAATCATGATGATGC
CAATGATCAATTGTATGACctttcagaagcagccaccgacctaaaatttg
caaatacctgttctgatttgccagctggaagaaTTTCCCCGAAATTAAAG
GCTCTGgacatagtgaaaaatcaatttcagaatttgaagataaaacctta
tgttttcgctgctttgacatgtttaagaacaaactgcttttgaaaaaatg
aatttaagtaattacataaTGAGTAATTgaggaataagtgtggcatggac
cttaataaaacgtcataacgacgctattcgtatacttttcacaaaaaagc
ctaatctccttggggaaatcattttattgtttaaaactttttttaatgac
aaataatttctttatttagattttttcggaaaaattttctatttggctac
atcccaagttatagctgttttcgtaTGCAAATTTAGTGGGGAAAATCGcc
aaaatgaggttttttggagattttaaaggaaagatacttaCACAAAAACt
ttccgaaattgtatttttagatactaaatagatacatcacctgaaccaaa
aaaaattccaaatgtttgatttttaccgagattagggccttgaaaggtga
aatactcttcttcgaaaaactcttcgttttcttcttcatttaattttttc
atttcaatttttcgatttttaaattctaaaaaggtttaacaggacatata
aaaaaagaccgactctgatcaaagatggtggataaaGCTTtgtaaagaat
ttaaaaaacatcAGTGTTGTCATTACTTTGTacaagaattttgaaatttc
catagaTATTGGTTTATTTATTTTCGTATTATTGGGGATCGTAATTAATA
GCTTCATTTTATGTATCTCTCTTAGGGAAATTGGTACACTTTCCAGAACT
ACAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00036963-exon-sc0001544-1491911889:40159..40550 | TCONS_00036963-exon-sc0001544-1491911889:40159..40550 | Clytia hemisphaerica | exon |
| TCONS_00036963-exon-sc0001544-1510915933:40159..40550 | TCONS_00036963-exon-sc0001544-1510915933:40159..40550 | Clytia hemisphaerica | exon |
| TCONS_00036963-exon-sc0001544-1575043694:40159..40550 | TCONS_00036963-exon-sc0001544-1575043694:40159..40550 | Clytia hemisphaerica | exon |
| TCONS_00036963-exon-sc0001544-1491911889:41684..41712 | TCONS_00036963-exon-sc0001544-1491911889:41684..41712 | Clytia hemisphaerica | exon |
| TCONS_00036963-exon-sc0001544-1510915933:41684..41712 | TCONS_00036963-exon-sc0001544-1510915933:41684..41712 | Clytia hemisphaerica | exon |
| TCONS_00036963-exon-sc0001544-1575043694:41684..41712 | TCONS_00036963-exon-sc0001544-1575043694:41684..41712 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001544 | supercontig | sc0001544:40159..41712 + |
Blast
The following BLAST results are available for this feature:
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