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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00036961 ID=TCONS_00036961|Name=TCONS_00036961|organism=Clytia hemisphaerica|type=transcript|length=435bp
CCTCAACAGAACCGCCCTCACACAGTGACATTATGAATCGGTACAAACGC
CTTATGTCTTCGCAAAAGGAAAACAAACGTACAGATGGACCTTCCACTGA
CGCCAATGAGCCGAAGCAGGACGAAATTACGATAAAAGACGAATCTCCTG
TTGTGGAGACAATTCATGCATTGCCTGAAGCGAAGTTGTTGGAGATCAAC
GATGCAGCCAGCCCTTTGATTAACATGTCACCGGCTAAAGTGACCGATTA
TTTCTTAGACCCTTTCCACACTGGAGCGACACCTCCTCCACTTATTGACG
TCATGGATGTTTTGGAACCTGAACGACCTAAAGAAATGAACCTCATCGAA
TTCTAAAATCGCACACTCGATGCACCGGACTGATTCCGGGACTGATTCAC
GTCTGGTCCAGTGTTTGGATTGTCcagtgttaaaa Run BLAST on NCBI transcript from alignment at sc0001544:9783..12346+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00036961 ID=TCONS_00036961|Name=TCONS_00036961|organism=Clytia hemisphaerica|type=transcript|length=2564bp|location=Sequence derived from alignment at sc0001544:9783..12346+ (Clytia hemisphaerica)
CCTCAACAGAACCGCCCTCACACAGTGACATTATGAATCGGTACAAACGC
CTTATGTCTTCGCAAAAGGAAAACAAACGTACAGATGGACCTTCCACTGA
CGCCAATGAGCCGAAGCAGGACGAAATTACGATAAAAGACGAATCTCCTG
TTGTGGAGACAATTCATGCATGTAAGTTGATGGACATTtaggctgggctt
aaaaaattgttggtttgccgtcacccgaccctagattttggaggtgggtc
agtcagtcggaatttttttttattttggcaatttatgaaattttcgtcca
tggaagggttaacagtttgtttacatttaggtaattttgaataaaaaaca
gaagtNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNataaaaaacagaagtg
ctagcagggaatttacgattcttatgcttgagacaaacaagatacgagtt
ttgattttttattgtttgaagtttttgaaggaaaaaatcttctttaaaat
ggcaataaaatgttttgggtcggcaggtttcgaggtacggtcggtcgggt
gacggcaaaccaacaattttttaagtcacTGTTTTTATGGTTTTCATatt
taaaatgttatttttaggTCTTTTATACCATTTATACCTAAACGAATAAG
ATCGGCCTTTACCACAAAAAGGGAAAATTACTTTCGCATTATACTTAAAA
CAAAGATATATAACGAGCCAATGTCGGTACGTTGAAGAACGATCTTTAAT
GTACCGACATTGACTCTCTCTCGATTAAGTGTTTTCTTGTCACCGTCTCC
TTGAAATTTCTATATGTCTGTATCGGCATTCTTTAACTGTTGTCATAGCG
GAAAGTTTTAAAAGACTGCTACATTTATTTTTCAagtcgaaagtaatttc
atcaACCCTGATTTTATTGAAGCTTAGAACTCAATGATAATTTTCATCCA
CCCGGATATTTATTTAGAAATCAcccaatttgaaaatttcaatcaatttc
aaCCAGAAATACACAAAGTGTGTTTCTAGTAATCCTGTATTCTTGGTAAA
ACTACAACCGAAAAGCCTTAGTTTGACCACTGTGTTTCTATTAGTGGTCA
GATCCCGGCTATAATTCATAACAGTCAGTGGTCTAGCCAGTAAAATGCGG
TTTTCATCAAACAGGCCAACAGTGGTCAGAGCTTCTTTTTCGGGGCTTTG
CATTAGAAAAAtaacttacgcatatcaagaataaaaaTCAACTTTCCTAC
TTTTtaaatcagcattttttgacATCATACATAAGACACAGTTTCCTAAA
GTATTATGAAATTCAGCATGTCGAGTTCTATACAAACATAGATTTTATAT
AAAGCGACCAGGTTGTTAAGGTTCGGGCCCTAAAATCAGACAAATATTTG
TTACCTTCTCGTAAAggaattcttttttgataatctAATGATACTTCTTG
ATCTTATAACAAACATTAATACGATACTAGAGGAAGTTATAGCAaacttt
ttcgaaattaagctaGAAAGCTAAAGCAGCTCTAACCCTTAGTTGCTGGC
TCTGATAACTTCGGCAAGACTTCTTATTTGACTCGTCTTTGCTTTTTATA
TGGACAAATCACTGATCTGTAACTACTTAACTAGATCAGTCTTCCCATGT
AGTTTCTgattgaaaacaatagaatttcaacgtgagGTACGTGTGAGGta
tgaaaatctgaaattttaaatcgtcatatttattcatttccacaatatga
aaatatttggtTGGCTTACTAAGGACCATAGAAGGAATCTTTGAAGCTaa
gttttactttttatctggtTACNCCATATCTACTTCAGGATGCTTTTTCG
TGAAAATATTCGATTGGCTTACTAAGGACCATAGAAGGGATCTTTGAAGC
TaagttttactttttatctggtTACCCCTTTGATCTTGTTTTCTCGTTTT
AATGTTTTAGTGCCTGAAGCGAAGTTGTTGGAGATCAACGATGCAGCCAG
CCCTTTGATTAACATGTCACCGGCTAAAGTGACCGATTATTTCTTAGACC
CTTTCCACACTGGAGCGACACCTCCTCCACTTATTGACGTCATGGATGTT
TTGGAACCTGAACGACCTAAAGAAATGAACCTCATCGAATTCTAAAATGT
AAAAGGAATCGTTttcatttgttgtcaaagttcgctttttttaaaaacat
tggattttttccaacGTTGAAAGTCTAGAACGACCCTATCGAAAAACCAG
CCTGTCCGGTGTTTTTTTCCGGTGCCGAAAAGTATTATTAAATTACGCTG
GACAAAACTGTTCGGTAGTTGTCCCTTGTTACACCATGCGAATTCTTCAC
ACCGGACAACTAAcggacttttttctttagcgtTTTAGCGCACACTCGAT
GCACCGGACTGATTCCGGGACTGATTCACGTCTGGTCCAGTGTTTGGATT
GTCcagtgttaaaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00036961-exon-sc0001544-1491911889:9783..9953 | TCONS_00036961-exon-sc0001544-1491911889:9783..9953 | Clytia hemisphaerica | exon |
| TCONS_00036961-exon-sc0001544-1510915933:9783..9953 | TCONS_00036961-exon-sc0001544-1510915933:9783..9953 | Clytia hemisphaerica | exon |
| TCONS_00036961-exon-sc0001544-1575043694:9783..9953 | TCONS_00036961-exon-sc0001544-1575043694:9783..9953 | Clytia hemisphaerica | exon |
| TCONS_00036961-exon-sc0001544-1491911889:11843..12030 | TCONS_00036961-exon-sc0001544-1491911889:11843..12030 | Clytia hemisphaerica | exon |
| TCONS_00036961-exon-sc0001544-1510915933:11843..12030 | TCONS_00036961-exon-sc0001544-1510915933:11843..12030 | Clytia hemisphaerica | exon |
| TCONS_00036961-exon-sc0001544-1575043694:11843..12030 | TCONS_00036961-exon-sc0001544-1575043694:11843..12030 | Clytia hemisphaerica | exon |
| TCONS_00036961-exon-sc0001544-1491911889:12271..12346 | TCONS_00036961-exon-sc0001544-1491911889:12271..12346 | Clytia hemisphaerica | exon |
| TCONS_00036961-exon-sc0001544-1510915933:12271..12346 | TCONS_00036961-exon-sc0001544-1510915933:12271..12346 | Clytia hemisphaerica | exon |
| TCONS_00036961-exon-sc0001544-1575043694:12271..12346 | TCONS_00036961-exon-sc0001544-1575043694:12271..12346 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001544 | supercontig | sc0001544:9783..12346 + |
Blast
The following BLAST results are available for this feature:
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