|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00036960 ID=TCONS_00036960|Name=TCONS_00036960|organism=Clytia hemisphaerica|type=transcript|length=447bp
CCACCCTCAACAGAACCGCCCTCACACAGTGACATTATGAATCGGTACAA
ACGCCTTATGTCTTCGCAAAAGGAAAACAAACGTACAGATGGACCTTCCA
CTGACGCCAATGAGCCGAAGCAGGACGAAATTACGATAAAAGACGAATCT
CCTGTTGTGGAGACAATTCATGCATTGCCTGAAGCGAAGTTGTTGGAGAT
CAACGATGCAGCCAGCCCTTTGATTAACATGTCACCGGCTAAAGTGACCG
ATTATTTCTTAGACCCTTTCCACACTGGAGCGACACCTCCTCCACTTATT
GACGTCATGGATGTTTTGGAACCTGAACGACCTAAAGAAATGAACCTCAT
CGAATTCTAAAATcgtTTTAGCGCACACTCGATGCACCGGACTGATTCCG
GGACTGATTCACGTCTGGTCCAGTGTTTGGATTGTCcagtgttaaaa Run BLAST on NCBI protein sequence of TCONS_00036960-protein >TCONS_00036960-protein ID=TCONS_00036960-protein|Name=TCONS_00036960-protein|organism=Clytia hemisphaerica|type=polypeptide|length=119bp
PPSTEPPSHSDIMNRYKRLMSSQKENKRTDGPSTDANEPKQDEITIKDES
PVVETIHALPEAKLLEINDAASPLINMSPAKVTDYFLDPFHTGATPPPLI
DVMDVLEPERPKEMNLIEF Run BLAST on NCBI transcript from alignment at sc0001544:9779..12346+ Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00036960 ID=TCONS_00036960|Name=TCONS_00036960|organism=Clytia hemisphaerica|type=transcript|length=2568bp|location=Sequence derived from alignment at sc0001544:9779..12346+ (Clytia hemisphaerica)
CCACCCTCAACAGAACCGCCCTCACACAGTGACATTATGAATCGGTACAA
ACGCCTTATGTCTTCGCAAAAGGAAAACAAACGTACAGATGGACCTTCCA
CTGACGCCAATGAGCCGAAGCAGGACGAAATTACGATAAAAGACGAATCT
CCTGTTGTGGAGACAATTCATGCATGTAAGTTGATGGACATTtaggctgg
gcttaaaaaattgttggtttgccgtcacccgaccctagattttggaggtg
ggtcagtcagtcggaatttttttttattttggcaatttatgaaattttcg
tccatggaagggttaacagtttgtttacatttaggtaattttgaataaaa
aacagaagtNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNataaaaaacaga
agtgctagcagggaatttacgattcttatgcttgagacaaacaagatacg
agttttgattttttattgtttgaagtttttgaaggaaaaaatcttcttta
aaatggcaataaaatgttttgggtcggcaggtttcgaggtacggtcggtc
gggtgacggcaaaccaacaattttttaagtcacTGTTTTTATGGTTTTCA
TatttaaaatgttatttttaggTCTTTTATACCATTTATACCTAAACGAA
TAAGATCGGCCTTTACCACAAAAAGGGAAAATTACTTTCGCATTATACTT
AAAACAAAGATATATAACGAGCCAATGTCGGTACGTTGAAGAACGATCTT
TAATGTACCGACATTGACTCTCTCTCGATTAAGTGTTTTCTTGTCACCGT
CTCCTTGAAATTTCTATATGTCTGTATCGGCATTCTTTAACTGTTGTCAT
AGCGGAAAGTTTTAAAAGACTGCTACATTTATTTTTCAagtcgaaagtaa
tttcatcaACCCTGATTTTATTGAAGCTTAGAACTCAATGATAATTTTCA
TCCACCCGGATATTTATTTAGAAATCAcccaatttgaaaatttcaatcaa
tttcaaCCAGAAATACACAAAGTGTGTTTCTAGTAATCCTGTATTCTTGG
TAAAACTACAACCGAAAAGCCTTAGTTTGACCACTGTGTTTCTATTAGTG
GTCAGATCCCGGCTATAATTCATAACAGTCAGTGGTCTAGCCAGTAAAAT
GCGGTTTTCATCAAACAGGCCAACAGTGGTCAGAGCTTCTTTTTCGGGGC
TTTGCATTAGAAAAAtaacttacgcatatcaagaataaaaaTCAACTTTC
CTACTTTTtaaatcagcattttttgacATCATACATAAGACACAGTTTCC
TAAAGTATTATGAAATTCAGCATGTCGAGTTCTATACAAACATAGATTTT
ATATAAAGCGACCAGGTTGTTAAGGTTCGGGCCCTAAAATCAGACAAATA
TTTGTTACCTTCTCGTAAAggaattcttttttgataatctAATGATACTT
CTTGATCTTATAACAAACATTAATACGATACTAGAGGAAGTTATAGCAaa
ctttttcgaaattaagctaGAAAGCTAAAGCAGCTCTAACCCTTAGTTGC
TGGCTCTGATAACTTCGGCAAGACTTCTTATTTGACTCGTCTTTGCTTTT
TATATGGACAAATCACTGATCTGTAACTACTTAACTAGATCAGTCTTCCC
ATGTAGTTTCTgattgaaaacaatagaatttcaacgtgagGTACGTGTGA
GGtatgaaaatctgaaattttaaatcgtcatatttattcatttccacaat
atgaaaatatttggtTGGCTTACTAAGGACCATAGAAGGAATCTTTGAAG
CTaagttttactttttatctggtTACNCCATATCTACTTCAGGATGCTTT
TTCGTGAAAATATTCGATTGGCTTACTAAGGACCATAGAAGGGATCTTTG
AAGCTaagttttactttttatctggtTACCCCTTTGATCTTGTTTTCTCG
TTTTAATGTTTTAGTGCCTGAAGCGAAGTTGTTGGAGATCAACGATGCAG
CCAGCCCTTTGATTAACATGTCACCGGCTAAAGTGACCGATTATTTCTTA
GACCCTTTCCACACTGGAGCGACACCTCCTCCACTTATTGACGTCATGGA
TGTTTTGGAACCTGAACGACCTAAAGAAATGAACCTCATCGAATTCTAAA
ATGTAAAAGGAATCGTTttcatttgttgtcaaagttcgctttttttaaaa
acattggattttttccaacGTTGAAAGTCTAGAACGACCCTATCGAAAAA
CCAGCCTGTCCGGTGTTTTTTTCCGGTGCCGAAAAGTATTATTAAATTAC
GCTGGACAAAACTGTTCGGTAGTTGTCCCTTGTTACACCATGCGAATTCT
TCACACCGGACAACTAAcggacttttttctttagcgtTTTAGCGCACACT
CGATGCACCGGACTGATTCCGGGACTGATTCACGTCTGGTCCAGTGTTTG
GATTGTCcagtgttaaaa Coding sequence (CDS) from alignment at sc0001544:9779..12346+ >TCONS_00036960 ID=TCONS_00036960|Name=TCONS_00036960|organism=Clytia hemisphaerica|type=CDS|length=720bp|location=Sequence derived from alignment at sc0001544:9779..12346+ (Clytia hemisphaerica)
CCACCCTCAACAGAACCGCCCTCACACAGTGACATTATGAATCGGTACAA
ACGCCTTATGTCTTCGCAAAAGGAAAACAAACGTACAGATGGACCTTCCA
CTGACGCCAATGAGCCGAAGCAGGACGAAATTACGATAAAAGACGAATCT
CCTGTTGTGGAGACAATTCATGCATTGCCTGAAGCGAAGTTGTTGGAGAT
CAACGATGCAGCCAGCCCTTTGATTAACATGTCACCGGCTAAAGTGACCG
ATTATTTCTTAGACCCTTTCCACACTGGAGCGACACCTCCTCCACTTATT
GACGTCATGGATGTTTTGGAACCTGAACGACCTAAAGAAATGAACCTCAT
CGAATTCTAACCACCCTCAACAGAACCGCCCTCACACAGTGACATTATGA
ATCGGTACAAACGCCTTATGTCTTCGCAAAAGGAAAACAAACGTACAGAT
GGACCTTCCACTGACGCCAATGAGCCGAAGCAGGACGAAATTACGATAAA
AGACGAATCTCCTGTTGTGGAGACAATTCATGCATTGCCTGAAGCGAAGT
TGTTGGAGATCAACGATGCAGCCAGCCCTTTGATTAACATGTCACCGGCT
AAAGTGACCGATTATTTCTTAGACCCTTTCCACACTGGAGCGACACCTCC
TCCACTTATTGACGTCATGGATGTTTTGGAACCTGAACGACCTAAAGAAA
TGAACCTCATCGAATTCTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00036960-exon-sc0001544-1491911889:9779..9953 | TCONS_00036960-exon-sc0001544-1491911889:9779..9953 | Clytia hemisphaerica | exon |
| TCONS_00036960-exon-sc0001544-1510915933:9779..9953 | TCONS_00036960-exon-sc0001544-1510915933:9779..9953 | Clytia hemisphaerica | exon |
| TCONS_00036960-exon-sc0001544-1575043694:9779..9953 | TCONS_00036960-exon-sc0001544-1575043694:9779..9953 | Clytia hemisphaerica | exon |
| TCONS_00036960-exon-sc0001544-1491911889:11843..12030 | TCONS_00036960-exon-sc0001544-1491911889:11843..12030 | Clytia hemisphaerica | exon |
| TCONS_00036960-exon-sc0001544-1510915933:11843..12030 | TCONS_00036960-exon-sc0001544-1510915933:11843..12030 | Clytia hemisphaerica | exon |
| TCONS_00036960-exon-sc0001544-1575043694:11843..12030 | TCONS_00036960-exon-sc0001544-1575043694:11843..12030 | Clytia hemisphaerica | exon |
| TCONS_00036960-exon-sc0001544-1491911889:12263..12346 | TCONS_00036960-exon-sc0001544-1491911889:12263..12346 | Clytia hemisphaerica | exon |
| TCONS_00036960-exon-sc0001544-1510915933:12263..12346 | TCONS_00036960-exon-sc0001544-1510915933:12263..12346 | Clytia hemisphaerica | exon |
| TCONS_00036960-exon-sc0001544-1575043694:12263..12346 | TCONS_00036960-exon-sc0001544-1575043694:12263..12346 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001544 | supercontig | sc0001544:9779..12346 + |
Blast
The following BLAST results are available for this feature:
|
