|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00036959 ID=TCONS_00036959|Name=TCONS_00036959|organism=Clytia hemisphaerica|type=transcript|length=680bp
ACCACCCTCAACAGAACCGCCCTCACACAGTGACATTATGAATCGGTACA
AACGCCTTATGTCTTCGCAAAAGGAAAACAAACGTACAGATGGACCTTCC
ACTGACGCCAATGAGCCGAAGCAGGACGAAATTACGATAAAAGACGAATC
TCCTGTTGTGGAGACAATTCATGCATTGCCTGAAGCGAAGTTGTTGGAGA
TCAACGATGCAGCCAGCCCTTTGATTAACATGTCACCGGCTAAAGTGACC
GATTATTTCTTAGACCCTTTCCACACTGGAGCGACACCTCCTCCACTTAT
TGACGTCATGGATGTTTTGGAACCTGAACGACCTAAAGAAATGAACCTCA
TCGAATTCTAAAATGTAAAAGGAATCGTTttcatttgttgtcaaagttcg
ctttttttaaaaacattggattttttccaacGTTGAAAGTCTAGAACGAC
CCTATCGAAAAACCAGCCTGTCCGGTGTTTTTTTCCGGTGCCGAAAAGTA
TTATTAAATTACGCTGGACAAAACTGTTCGGTAGTTGTCCCTTGTTACAC
CATGCGAATTCTTCACACCGGACAACTAAcggacttttttctttagcgtT
TTAGCGCACACTCGATGCACCGGACTGATTCCGGGACTGATTCACGTCTG
GTCCAGTGTTTGGATTGTCcagtgttaaaa Run BLAST on NCBI transcript from alignment at sc0001544:9778..12346+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00036959 ID=TCONS_00036959|Name=TCONS_00036959|organism=Clytia hemisphaerica|type=transcript|length=2569bp|location=Sequence derived from alignment at sc0001544:9778..12346+ (Clytia hemisphaerica)
ACCACCCTCAACAGAACCGCCCTCACACAGTGACATTATGAATCGGTACA
AACGCCTTATGTCTTCGCAAAAGGAAAACAAACGTACAGATGGACCTTCC
ACTGACGCCAATGAGCCGAAGCAGGACGAAATTACGATAAAAGACGAATC
TCCTGTTGTGGAGACAATTCATGCATGTAAGTTGATGGACATTtaggctg
ggcttaaaaaattgttggtttgccgtcacccgaccctagattttggaggt
gggtcagtcagtcggaatttttttttattttggcaatttatgaaattttc
gtccatggaagggttaacagtttgtttacatttaggtaattttgaataaa
aaacagaagtNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNataaaaaacag
aagtgctagcagggaatttacgattcttatgcttgagacaaacaagatac
gagttttgattttttattgtttgaagtttttgaaggaaaaaatcttcttt
aaaatggcaataaaatgttttgggtcggcaggtttcgaggtacggtcggt
cgggtgacggcaaaccaacaattttttaagtcacTGTTTTTATGGTTTTC
ATatttaaaatgttatttttaggTCTTTTATACCATTTATACCTAAACGA
ATAAGATCGGCCTTTACCACAAAAAGGGAAAATTACTTTCGCATTATACT
TAAAACAAAGATATATAACGAGCCAATGTCGGTACGTTGAAGAACGATCT
TTAATGTACCGACATTGACTCTCTCTCGATTAAGTGTTTTCTTGTCACCG
TCTCCTTGAAATTTCTATATGTCTGTATCGGCATTCTTTAACTGTTGTCA
TAGCGGAAAGTTTTAAAAGACTGCTACATTTATTTTTCAagtcgaaagta
atttcatcaACCCTGATTTTATTGAAGCTTAGAACTCAATGATAATTTTC
ATCCACCCGGATATTTATTTAGAAATCAcccaatttgaaaatttcaatca
atttcaaCCAGAAATACACAAAGTGTGTTTCTAGTAATCCTGTATTCTTG
GTAAAACTACAACCGAAAAGCCTTAGTTTGACCACTGTGTTTCTATTAGT
GGTCAGATCCCGGCTATAATTCATAACAGTCAGTGGTCTAGCCAGTAAAA
TGCGGTTTTCATCAAACAGGCCAACAGTGGTCAGAGCTTCTTTTTCGGGG
CTTTGCATTAGAAAAAtaacttacgcatatcaagaataaaaaTCAACTTT
CCTACTTTTtaaatcagcattttttgacATCATACATAAGACACAGTTTC
CTAAAGTATTATGAAATTCAGCATGTCGAGTTCTATACAAACATAGATTT
TATATAAAGCGACCAGGTTGTTAAGGTTCGGGCCCTAAAATCAGACAAAT
ATTTGTTACCTTCTCGTAAAggaattcttttttgataatctAATGATACT
TCTTGATCTTATAACAAACATTAATACGATACTAGAGGAAGTTATAGCAa
actttttcgaaattaagctaGAAAGCTAAAGCAGCTCTAACCCTTAGTTG
CTGGCTCTGATAACTTCGGCAAGACTTCTTATTTGACTCGTCTTTGCTTT
TTATATGGACAAATCACTGATCTGTAACTACTTAACTAGATCAGTCTTCC
CATGTAGTTTCTgattgaaaacaatagaatttcaacgtgagGTACGTGTG
AGGtatgaaaatctgaaattttaaatcgtcatatttattcatttccacaa
tatgaaaatatttggtTGGCTTACTAAGGACCATAGAAGGAATCTTTGAA
GCTaagttttactttttatctggtTACNCCATATCTACTTCAGGATGCTT
TTTCGTGAAAATATTCGATTGGCTTACTAAGGACCATAGAAGGGATCTTT
GAAGCTaagttttactttttatctggtTACCCCTTTGATCTTGTTTTCTC
GTTTTAATGTTTTAGTGCCTGAAGCGAAGTTGTTGGAGATCAACGATGCA
GCCAGCCCTTTGATTAACATGTCACCGGCTAAAGTGACCGATTATTTCTT
AGACCCTTTCCACACTGGAGCGACACCTCCTCCACTTATTGACGTCATGG
ATGTTTTGGAACCTGAACGACCTAAAGAAATGAACCTCATCGAATTCTAA
AATGTAAAAGGAATCGTTttcatttgttgtcaaagttcgctttttttaaa
aacattggattttttccaacGTTGAAAGTCTAGAACGACCCTATCGAAAA
ACCAGCCTGTCCGGTGTTTTTTTCCGGTGCCGAAAAGTATTATTAAATTA
CGCTGGACAAAACTGTTCGGTAGTTGTCCCTTGTTACACCATGCGAATTC
TTCACACCGGACAACTAAcggacttttttctttagcgtTTTAGCGCACAC
TCGATGCACCGGACTGATTCCGGGACTGATTCACGTCTGGTCCAGTGTTT
GGATTGTCcagtgttaaaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00036959-exon-sc0001544-1491911889:9778..9953 | TCONS_00036959-exon-sc0001544-1491911889:9778..9953 | Clytia hemisphaerica | exon |
| TCONS_00036959-exon-sc0001544-1510915933:9778..9953 | TCONS_00036959-exon-sc0001544-1510915933:9778..9953 | Clytia hemisphaerica | exon |
| TCONS_00036959-exon-sc0001544-1575043694:9778..9953 | TCONS_00036959-exon-sc0001544-1575043694:9778..9953 | Clytia hemisphaerica | exon |
| TCONS_00036959-exon-sc0001544-1491911889:11843..12346 | TCONS_00036959-exon-sc0001544-1491911889:11843..12346 | Clytia hemisphaerica | exon |
| TCONS_00036959-exon-sc0001544-1510915933:11843..12346 | TCONS_00036959-exon-sc0001544-1510915933:11843..12346 | Clytia hemisphaerica | exon |
| TCONS_00036959-exon-sc0001544-1575043694:11843..12346 | TCONS_00036959-exon-sc0001544-1575043694:11843..12346 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001544 | supercontig | sc0001544:9778..12346 + |
Blast
The following BLAST results are available for this feature:
|
