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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00036958 ID=TCONS_00036958|Name=TCONS_00036958|organism=Clytia hemisphaerica|type=transcript|length=494bp
AGGCAAATCCAACAGCTGCTCCTCCATCATCGACCAGCCAACAAAATAAA
TCGCAAGTTCCCAACCTCCGACCTTCAGCGCTGTCTACATCTCGTCTGAA
GGCACCATCATCTAAAAGCACTTCAGACATGAAGCTATCCACCTCCGCTA
GGGGACCTATGCGTGCAACAGCTTCCCAATCCACTATACCAAGTACGGTC
AATAGCGGTGTTCCAAGGACGAATTTAAAACTTCAAAGTGTCTCACGAAA
GAGCACTGCTTCAACCGGAACTCCAACGAGAAACAGTGGTATACCGAGTG
CGCGACGTCGTTCGAAGATCGAAACACCGTCGGCCTCTACCACGACGTCT
GTTCCATTAACACGCCCTGCAATCACGTCACGTCAAAGTCTTATTACTCC
GGTACAGCGTACGCCTTCGTCAAGACGACAAATGACTGCACGACAACTTA
TCACTAAACGGAGAGactCCTCACGAACTCCGTCACCAATCGAA Run BLAST on NCBI protein sequence of TCONS_00036958-protein >TCONS_00036958-protein ID=TCONS_00036958-protein|Name=TCONS_00036958-protein|organism=Clytia hemisphaerica|type=polypeptide|length=164bp
ANPTAAPPSSTSQQNKSQVPNLRPSALSTSRLKAPSSKSTSDMKLSTSAR
GPMRATASQSTIPSTVNSGVPRTNLKLQSVSRKSTASTGTPTRNSGIPSA
RRRSKIETPSASTTTSVPLTRPAITSRQSLITPVQRTPSSRRQMTARQLI
TKRRDSSRTPSPIE Run BLAST on NCBI transcript from alignment at sc0001544:7563..9619+ Legend: exonfive_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00036958 ID=TCONS_00036958|Name=TCONS_00036958|organism=Clytia hemisphaerica|type=transcript|length=2057bp|location=Sequence derived from alignment at sc0001544:7563..9619+ (Clytia hemisphaerica)
AGGCAAATCCAACAGCTGCTCCTCCATCATCGACCAGCCAACAAAATAAA
TCGCAAGTTCCCAACCTCCGACCTTCAGCGCTGTCTACATCTCGTCTGAA
GGCACCATCATCTAAAAGCACTTCAGACATGAAGCTATCCACCTCCGCTA
GGGGACCTATGCGTGCAACAGCTTCCCAATCCACTATACCAAGTACGGTC
AATAGCGGTGTTCCAAGGACGAATTTAAAACTTCAAAGTGTCTCACGAAA
GAGCACTGCTTCAACCGGTTTGtagttttaaattatttttttagctGCGT
CCTGCGGACCGTGGTGCAGttgtagagcatccggctaagGTTCTCAAGGA
TGTGGGTTTAACCCcaagccgggtcataccaaagattgtcaaaatggtac
ttgatgcctctctgcttgatgcttagcaattaagagaaggatcaaaaagg
gtaagtggagaaatccagggagaaagagtggcgccctcccctaccttcgg
gtagatagctatcgaaagaggagccttcgggtcgcctccgactgctgTCG
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNGTCGAAGACTTTCTTAGCTGCCTCATTAGAGCCCTTCCCTTGT
ATTTTGAATACCTCTTTTTGTCGCTTTACTCGAACTCTATTGAGTATCTG
GCAAAACGGGTTTATAGGTATAATAATAGTCAGTCAGGAAGAAataacac
actttttaattctGCTACTGGCTTTTGCTACTGCCACTACTATCACCAGT
GATAATCTTCAGGCAACTTAAAATCTAGGTAcaataatataaatttgaaa
ttcGTATTTGCGCaaaatagtagggggaaatttgttcgtttttttgaggt
cgctcgacttttttagtcaaagcacttgttatacatttttggaaagctaa
ggggtaggggaatcaaaataacttgggtgccaatttttttcggacacttt
cgtgtgattttcggacaaatacgacggtctcaggcaaaaatcatagggtg
aaaaattaatgaaaatttcagcttgagaaaacggagacctgttgtatatt
tttggaaagctcctaaaaaattaagattagtgatatattgcgagtatagg
taatttctttacctaactcgagatattaatccttaaaaacagtgtttttc
agtgtttttcagctagaaacagctgttttgtccagtttttgcgctttcag
aagctcaatatctcgagttaggtactgaaatcacctatactcgcaatata
tcactAATCTTAATTTTTTGAGAGCTTTCCAAAAATATACAACAGGTCTC
CGTTTTCTCAAGTTAAAATTTTCATTAATTTTTCActctatgatttttgc
ctgagaccgtcgtatttggccgaaaatcacaccaaagtgtccgaaagaaa
attggcacccaagttattttgattcccctaccccttagctttccaaaaat
gtatagcaagtgctttgactaaaaaaatcgagcgattttacaaatttccc
cctactaaaacTTGTTCGTACTTGGATAGTTTGCTTGGAAATTTTGACAC
AAAACTTTGGCTTTCTCGTCCAGGTTTTGAAAAAGACGAATTAGCTTTAA
AACAGAGATTTTGGATTTAAATAAGAAATATCTCTTTGCAGGAACTCCAA
CGAGAAACAGTGGTATACCGAGTGCGCGACGTCGTTCGAAGATCGAAACA
CCGTCGGCCTCTACCACGACGTCTGTTCCATTAACACGCCCTGCAATCAC
GTCACGTCAAAGTCTTATTACTCCGGTACAGCGTACGCCTTCGTCAAGAC
GACAAATGACTGCACGACAACTTATCACTAAACGGAGAGGTAATAAAAGC
ATCAAGTTCAAGGCCCTGGAGAAGCTAGGGATGAAACAATTAATAATTTA
ATTTGATgttgttctttttcattttcagactCCTCACGAACTCCGTCACC
AATCGAA Coding sequence (CDS) from alignment at sc0001544:7563..9619+ >TCONS_00036958 ID=TCONS_00036958|Name=TCONS_00036958|organism=Clytia hemisphaerica|type=CDS|length=1476bp|location=Sequence derived from alignment at sc0001544:7563..9619+ (Clytia hemisphaerica)
GCAAATCCAACAGCTGCTCCTCCATCATCGACCAGCCAACAAAATAAATC
GCAAGTTCCCAACCTCCGACCTTCAGCGCTGTCTACATCTCGTCTGAAGG
CACCATCATCTAAAAGCACTTCAGACATGAAGCTATCCACCTCCGCTAGG
GGACCTATGCGTGCAACAGCTTCCCAATCCACTATACCAAGTACGGTCAA
TAGCGGTGTTCCAAGGACGAATTTAAAACTTCAAAGTGTCTCACGAAAGA
GCACTGCTTCAACCGGAACTCCAACGAGAAACAGTGGTATACCGAGTGCG
CGACGTCGTTCGAAGATCGAAACACCGTCGGCCTCTACCACGACGTCTGT
TCCATTAACACGCCCTGCAATCACGTCACGTCAAAGTCTTATTACTCCGG
TACAGCGTACGCCTTCGTCAAGACGACAAATGACTGCACGACAACTTATC
ACTAAACGGAGAGactCCTCACGAACTCCGTCACCAATCGAAGCAAATCC
AACAGCTGCTCCTCCATCATCGACCAGCCAACAAAATAAATCGCAAGTTC
CCAACCTCCGACCTTCAGCGCTGTCTACATCTCGTCTGAAGGCACCATCA
TCTAAAAGCACTTCAGACATGAAGCTATCCACCTCCGCTAGGGGACCTAT
GCGTGCAACAGCTTCCCAATCCACTATACCAAGTACGGTCAATAGCGGTG
TTCCAAGGACGAATTTAAAACTTCAAAGTGTCTCACGAAAGAGCACTGCT
TCAACCGGAACTCCAACGAGAAACAGTGGTATACCGAGTGCGCGACGTCG
TTCGAAGATCGAAACACCGTCGGCCTCTACCACGACGTCTGTTCCATTAA
CACGCCCTGCAATCACGTCACGTCAAAGTCTTATTACTCCGGTACAGCGT
ACGCCTTCGTCAAGACGACAAATGACTGCACGACAACTTATCACTAAACG
GAGAGactCCTCACGAACTCCGTCACCAATCGAAGCAAATCCAACAGCTG
CTCCTCCATCATCGACCAGCCAACAAAATAAATCGCAAGTTCCCAACCTC
CGACCTTCAGCGCTGTCTACATCTCGTCTGAAGGCACCATCATCTAAAAG
CACTTCAGACATGAAGCTATCCACCTCCGCTAGGGGACCTATGCGTGCAA
CAGCTTCCCAATCCACTATACCAAGTACGGTCAATAGCGGTGTTCCAAGG
ACGAATTTAAAACTTCAAAGTGTCTCACGAAAGAGCACTGCTTCAACCGG
AACTCCAACGAGAAACAGTGGTATACCGAGTGCGCGACGTCGTTCGAAGA
TCGAAACACCGTCGGCCTCTACCACGACGTCTGTTCCATTAACACGCCCT
GCAATCACGTCACGTCAAAGTCTTATTACTCCGGTACAGCGTACGCCTTC
GTCAAGACGACAAATGACTGCACGACAACTTATCACTAAACGGAGAGact
CCTCACGAACTCCGTCACCAATCGAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00036958-exon-sc0001544-1491911889:7563..7829 | TCONS_00036958-exon-sc0001544-1491911889:7563..7829 | Clytia hemisphaerica | exon |
| TCONS_00036958-exon-sc0001544-1510915933:7563..7829 | TCONS_00036958-exon-sc0001544-1510915933:7563..7829 | Clytia hemisphaerica | exon |
| TCONS_00036958-exon-sc0001544-1575043694:7563..7829 | TCONS_00036958-exon-sc0001544-1575043694:7563..7829 | Clytia hemisphaerica | exon |
| TCONS_00036958-exon-sc0001544-1491911889:9304..9501 | TCONS_00036958-exon-sc0001544-1491911889:9304..9501 | Clytia hemisphaerica | exon |
| TCONS_00036958-exon-sc0001544-1510915933:9304..9501 | TCONS_00036958-exon-sc0001544-1510915933:9304..9501 | Clytia hemisphaerica | exon |
| TCONS_00036958-exon-sc0001544-1575043694:9304..9501 | TCONS_00036958-exon-sc0001544-1575043694:9304..9501 | Clytia hemisphaerica | exon |
| TCONS_00036958-exon-sc0001544-1491911889:9591..9619 | TCONS_00036958-exon-sc0001544-1491911889:9591..9619 | Clytia hemisphaerica | exon |
| TCONS_00036958-exon-sc0001544-1510915933:9591..9619 | TCONS_00036958-exon-sc0001544-1510915933:9591..9619 | Clytia hemisphaerica | exon |
| TCONS_00036958-exon-sc0001544-1575043694:9591..9619 | TCONS_00036958-exon-sc0001544-1575043694:9591..9619 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001544 | supercontig | sc0001544:7563..9619 + |
Blast
The following BLAST results are available for this feature:
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