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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00036956 ID=TCONS_00036956|Name=TCONS_00036956|organism=Clytia hemisphaerica|type=transcript|length=489bp
AATAACTAATAATCTTCTCTTAGCttctaagaaaaaaaagatttgaaaaa
cacGTACGATAGCCATTGATACAAAAGTAATATGAGTGGTGTAGTTGATG
ATTGGTTAAGTAATGAACAATTTGATTTCGATGTCACTACTTCACCTGTA
GGAGACAATGTGCTTTGCATTGTCAATCAATCGAAACAAACTACTGATGC
CGACGCGTGTTTGAATGACGGCGACGTCGATATTGCGGACGAGGATGACG
AAGAAGTGTTTTTCGGTCCACAGACACACAAAGAACGATGTGCTGCTGTT
GTGGTCAAAGAAGAAGAAGCTAAAAAAGTTACACCACAAGCTCTCAGTGC
TGAACAACAAGCTCTCTTGCTTAAAGAATCAGCTCTCCTGAGTGTTCGTA
TTAAACATGGTAGCACACCGAACACGCAATGCAACATCAAGAACAGCCCC
ATCGCGGTGGTTCACCCTATGCCTCGCCAGCAACCTCNN Run BLAST on NCBI protein sequence of TCONS_00036956-protein >TCONS_00036956-protein ID=TCONS_00036956-protein|Name=TCONS_00036956-protein|organism=Clytia hemisphaerica|type=polypeptide|length=136bp
MSGVVDDWLSNEQFDFDVTTSPVGDNVLCIVNQSKQTTDADACLNDGDVD
IADEDDEEVFFGPQTHKERCAAVVVKEEEAKKVTPQALSAEQQALLLKES
ALLSVRIKHGSTPNTQCNIKNSPIAVVHPMPRQQPX Run BLAST on NCBI transcript from alignment at sc0001544:3941..6339+ Legend: exonfive_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00036956 ID=TCONS_00036956|Name=TCONS_00036956|organism=Clytia hemisphaerica|type=transcript|length=2399bp|location=Sequence derived from alignment at sc0001544:3941..6339+ (Clytia hemisphaerica)
AATAACTAATAATCTTCTCTTAGCttctaagaaaaaaaagatttgaaaaa
cacGTACGATAGCCATTGATACAAAAGTAATATGAGTGGTAAGTCTTGtc
ttttcatcattttcttttcaaagcaaaattttgaacaatttgaaGGGAAT
TAATTCACAATGTGCCTGTGTCACATATTACGGCCTGTTGAACTTTGAAG
TTCCAAGTTTTTATATTCGGTGTacacatcaatttttttcatatatatcG
GCAACCAAGTTGCTTATAAGGCCCAGCcctgaaaatggccaaaaaagaaa
aaaattaaggtgGAAGTTCTGGAAAACTGGAAAACCGAAAAACTTTTTAA
CAGTTCATCCTTCAACCTTGAAGGGGAAAACTTAGCggggtaaaaaaatt
tcctttaatTTAACTAGAAACGTTTTTCGCCAGGAAAAACTTTGTCACTT
GCCCTGCTTGCCCTCTAATATATTGTTATTGTCCTTGACTTATTTTATCT
TCCTTTCCATTTTTGATTCAGTGtcataaaaaagatttcacCTGAAGTTC
AACTATCTTGAGATTGCAAAACAatctttttctcatctttttcGTGTGTC
TCCATAAAAAGATTACATCACGAATATTGAGAATTAAcacaaaataataa
ttttttacaGTATCTCATTATTTTATTCGCTTATTTatgaattgtttttt
attttggtttagGTGTAGTTGATGATTGGTTAAGTAATGAACAATTTGAT
TTCGATGTCACTACTTCACCTGTAGGAGAGTAAGTAATTTCTTATAAGCA
TGGACTCTAGAGGGCTCAACTCTCTCACTCTTTGGTAGGAGAACCCCCTT
CAAGTTAGCCCAAATCTTAGGAACTTACAAATCAACCAACACATTCCTCC
CTTACTTGATTTTGCTCTTGATGCATTGTTTATTGAGAAAGATGAAAGTT
AATTTTGAATAAAGACATTTAACAAGAAACTGATTTAAGTTACATTGAGA
AATGTAACGCACTCAGTGAAAAAATCTTGGCCTCTATTCTTCTTGAAAGG
TCATACCCCCCTTAGAGAAGAAGGGCTTCACATTATGCTTTTAGAGGAAG
AAACTCAGAAGGGGTGCAtttcactagtccgacactttctagtgcgacag
taaaatagtcagaatctataaaataaatccacaatttagaagtctttttt
ccgacgtcacttttgtccgtaaacaaaagattttagaGTATCGAATGTTT
AAcaagggtttttcactgagataatattaacaaaagttcattttggcggc
attagaaataaaggaccaatcaaatttgcATGTTCAGAATTATGCTATGA
TGAGGGTTGTAAACCACAAGCTTAATTTCAGCCCCCCCCAAAAGAAAGGT
TGTAAAAGCAgctacaaaatttaaaaaaagtctggTTTCGGGGCCCAATT
TCAAAGGCGGAACTTAGGGTTTTTATAAGCgcgtggttgcttataaaaaa
tgtgcctCCTTCGGCATTTCATATTTCGtttaacaaatttttatttttat
tatttttttgaatatattttttcattgtcggacaaaattgttgtaatact
gacgcattcgtcaaatccaaggtcggacatttttactgtcggactagaaa
gtgtcggactactgacgacctcccctCAGAAGTATTGGGcaaaaattctt
gattttttctggATTTGTTCAACATGACACTCTAATATAATTACTATAAT
agtaaagaattaaaatattaaaaaatactgCACAAAGTTtgcaaaaacaa
taaaacatttaaaattcgattttttaaggACTTTTTTTACTATTGCCAAA
GACAGCAATATAACTATTTCAATCACCCagaaataaaaacgaaaacttCC
TCAATTCCTATCTCCTTAGCAATGTGCTTTGCATTGTCAATCAATCGAAA
CAAACTACCGATGCCGACGCGTGTTTGAATGACGGCGACGTNCAAAGACA
GCAATATAACTATTGCAATCACCCagaaataaaaacgaaaacttCCTCAA
TTCCTATCTCCTTAGCAATGTGCTTTGCATTGTCAATCAATCGAAACAAA
CTACTGATGCCGACGCGTGTTTGAATGACGGCGACGTCGATATTGCGGAC
GAGGATGACGAAGAAGTGTTTTTCGGTCCACAGACACACAAAGAACGATG
TGCTGCTGTTGTGGTCAAAGAAGAAGAAGCTAAAAAAGTTACACCACAAG
CTCTCAGTGCTGAACAACAAGCTCTCTTGCTTAAAGAATCAGCTCTCCTG
AGTGTTCGTATTAAACATGGTAGCACACCGAACACGCAATGCAACATCAA
GAACAGCCCCATCGCGGTGGTTCACCCTATGCCTCGCCAGCAACCTCNN Coding sequence (CDS) from alignment at sc0001544:3941..6339+ >TCONS_00036956 ID=TCONS_00036956|Name=TCONS_00036956|organism=Clytia hemisphaerica|type=CDS|length=1224bp|location=Sequence derived from alignment at sc0001544:3941..6339+ (Clytia hemisphaerica)
ATGAGTGGTGTAGTTGATGATTGGTTAAGTAATGAACAATTTGATTTCGA
TGTCACTACTTCACCTGTAGGAGACAATGTGCTTTGCATTGTCAATCAAT
CGAAACAAACTACTGATGCCGACGCGTGTTTGAATGACGGCGACGTCGAT
ATTGCGGACGAGGATGACGAAGAAGTGTTTTTCGGTCCACAGACACACAA
AGAACGATGTGCTGCTGTTGTGGTCAAAGAAGAAGAAGCTAAAAAAGTTA
CACCACAAGCTCTCAGTGCTGAACAACAAGCTCTCTTGCTTAAAGAATCA
GCTCTCCTGAGTGTTCGTATTAAACATGGTAGCACACCGAACACGCAATG
CAACATCAAGAACAGCCCCATCGCGGTGGTTCACCCTATGCCTCGCCAGC
AACCTCNNATGAGTGGTGTAGTTGATGATTGGTTAAGTAATGAACAATTT
GATTTCGATGTCACTACTTCACCTGTAGGAGACAATGTGCTTTGCATTGT
CAATCAATCGAAACAAACTACTGATGCCGACGCGTGTTTGAATGACGGCG
ACGTCGATATTGCGGACGAGGATGACGAAGAAGTGTTTTTCGGTCCACAG
ACACACAAAGAACGATGTGCTGCTGTTGTGGTCAAAGAAGAAGAAGCTAA
AAAAGTTACACCACAAGCTCTCAGTGCTGAACAACAAGCTCTCTTGCTTA
AAGAATCAGCTCTCCTGAGTGTTCGTATTAAACATGGTAGCACACCGAAC
ACGCAATGCAACATCAAGAACAGCCCCATCGCGGTGGTTCACCCTATGCC
TCGCCAGCAACCTCNNATGAGTGGTGTAGTTGATGATTGGTTAAGTAATG
AACAATTTGATTTCGATGTCACTACTTCACCTGTAGGAGACAATGTGCTT
TGCATTGTCAATCAATCGAAACAAACTACTGATGCCGACGCGTGTTTGAA
TGACGGCGACGTCGATATTGCGGACGAGGATGACGAAGAAGTGTTTTTCG
GTCCACAGACACACAAAGAACGATGTGCTGCTGTTGTGGTCAAAGAAGAA
GAAGCTAAAAAAGTTACACCACAAGCTCTCAGTGCTGAACAACAAGCTCT
CTTGCTTAAAGAATCAGCTCTCCTGAGTGTTCGTATTAAACATGGTAGCA
CACCGAACACGCAATGCAACATCAAGAACAGCCCCATCGCGGTGGTTCAC
CCTATGCCTCGCCAGCAACCTCNN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00036956-exon-sc0001544-1491911889:3941..4028 | TCONS_00036956-exon-sc0001544-1491911889:3941..4028 | Clytia hemisphaerica | exon |
| TCONS_00036956-exon-sc0001544-1510915933:3941..4028 | TCONS_00036956-exon-sc0001544-1510915933:3941..4028 | Clytia hemisphaerica | exon |
| TCONS_00036956-exon-sc0001544-1575043694:3941..4028 | TCONS_00036956-exon-sc0001544-1575043694:3941..4028 | Clytia hemisphaerica | exon |
| TCONS_00036956-exon-sc0001544-1491911889:4653..4719 | TCONS_00036956-exon-sc0001544-1491911889:4653..4719 | Clytia hemisphaerica | exon |
| TCONS_00036956-exon-sc0001544-1510915933:4653..4719 | TCONS_00036956-exon-sc0001544-1510915933:4653..4719 | Clytia hemisphaerica | exon |
| TCONS_00036956-exon-sc0001544-1575043694:4653..4719 | TCONS_00036956-exon-sc0001544-1575043694:4653..4719 | Clytia hemisphaerica | exon |
| TCONS_00036956-exon-sc0001544-1491911889:6006..6339 | TCONS_00036956-exon-sc0001544-1491911889:6006..6339 | Clytia hemisphaerica | exon |
| TCONS_00036956-exon-sc0001544-1510915933:6006..6339 | TCONS_00036956-exon-sc0001544-1510915933:6006..6339 | Clytia hemisphaerica | exon |
| TCONS_00036956-exon-sc0001544-1575043694:6006..6339 | TCONS_00036956-exon-sc0001544-1575043694:6006..6339 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001544 | supercontig | sc0001544:3941..6339 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
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| IPR032768 | GTSE1_N |
Blast
The following BLAST results are available for this feature:
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