TCONS_00036955 (transcript) - C. hemisphaerica

Overview
NameTCONS_00036955
Unique NameTCONS_00036955
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length357

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00036955 ID=TCONS_00036955|Name=TCONS_00036955|organism=Clytia hemisphaerica|type=transcript|length=357bp
ACCGCCCTCTACTGCTTTCGAATCATGGAACCAAGATTGTGACGTCACAC
GGTCATCACCAATCATTTTCTCGTACCCAACCTTAGTCACCAGGCCTAGT
GGCACGTCGAAAACGTACGACATTATTGAACCGAACGTAAGGTAAACATT
TGCGCCGTACCATTCCGTAGCGCCGTCCGCGTCCAAGTAATAAAACAAGT
GCCCGTCATTGGTTAGAATAACCCATCCGCTACCCCGTTTCTCGACTTTC
CTGCTCGACGTGACGACAGCGATAACATTTCGAGCTCTCCCTCTCCACAG
GTAACTACCGACTGCACATTTTTGAGTACATTCCACGCAGCAGTTATCTC
CACACGT
Run BLAST on NCBI

protein sequence of TCONS_00036955-protein

>TCONS_00036955-protein ID=TCONS_00036955-protein|Name=TCONS_00036955-protein|organism=Clytia hemisphaerica|type=polypeptide|length=119bp
TCGDNCCVECTQKCAVGSYLWRGRARNVIAVVTSSRKVEKRGSGWVILTN
DGHLFYYLDADGATEWYGANVYLTFGSIMSYVFDVPLGLVTKVGYEKMIG
DDRVTSQSWFHDSKAVEGG
Run BLAST on NCBI

transcript from alignment at sc0001543:43636..43992

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00036955 ID=TCONS_00036955|Name=TCONS_00036955|organism=Clytia hemisphaerica|type=transcript|length=357bp|location=Sequence derived from alignment at sc0001543:43636..43992 (Clytia hemisphaerica)
ACGTGTGGAGATAACTGCTGCGTGGAATGTACTCAAAAATGTGCAGTCGG
TAGTTACCTGTGGAGAGGGAGAGCTCGAAATGTTATCGCTGTCGTCACGT
CGAGCAGGAAAGTCGAGAAACGGGGTAGCGGATGGGTTATTCTAACCAAT
GACGGGCACTTGTTTTATTACTTGGACGCGGACGGCGCTACGGAATGGTA
CGGCGCAAATGTTTACCTTACGTTCGGTTCAATAATGTCGTACGTTTTCG
ACGTGCCACTAGGCCTGGTGACTAAGGTTGGGTACGAGAAAATGATTGGT
GATGACCGTGTGACGTCACAATCTTGGTTCCATGATTCGAAAGCAGTAGA
GGGCGGT

Coding sequence (CDS) from alignment at sc0001543:43636..43992

>TCONS_00036955 ID=TCONS_00036955|Name=TCONS_00036955|organism=Clytia hemisphaerica|type=CDS|length=357bp|location=Sequence derived from alignment at sc0001543:43636..43992 (Clytia hemisphaerica)
ACGTGTGGAGATAACTGCTGCGTGGAATGTACTCAAAAATGTGCAGTCGG
TAGTTACCTGTGGAGAGGGAGAGCTCGAAATGTTATCGCTGTCGTCACGT
CGAGCAGGAAAGTCGAGAAACGGGGTAGCGGATGGGTTATTCTAACCAAT
GACGGGCACTTGTTTTATTACTTGGACGCGGACGGCGCTACGGAATGGTA
CGGCGCAAATGTTTACCTTACGTTCGGTTCAATAATGTCGTACGTTTTCG
ACGTGCCACTAGGCCTGGTGACTAAGGTTGGGTACGAGAAAATGATTGGT
GATGACCGTGTGACGTCACAATCTTGGTTCCATGATTCGAAAGCAGTAGA
GGGCGGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_021832XLOC_021832Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00036955-exon-sc0001543-1491911889:43636..43992TCONS_00036955-exon-sc0001543-1491911889:43636..43992Clytia hemisphaericaexon
TCONS_00036955-exon-sc0001543-1510915933:43636..43992TCONS_00036955-exon-sc0001543-1510915933:43636..43992Clytia hemisphaericaexon
TCONS_00036955-exon-sc0001543-1575043694:43636..43992TCONS_00036955-exon-sc0001543-1575043694:43636..43992Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00036955-proteinTCONS_00036955-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001543supercontigsc0001543:43636..43992 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.75128	2.56194	1.9262	3.04905	7.30645	8.37183	7.04052	2.44394	1.0897	6.73131	9.79421	1.72827	22.0292	14.8133	5.45266	5.76486	1.11538	3.98592	19.1728	12.5783	3.78546	2.56447	6.18312	10.9269	15.7235	16.5069	19.7779	35.4781	0.882792	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00036955 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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