TCONS_00036942 (transcript) - C. hemisphaerica

Overview
NameTCONS_00036942
Unique NameTCONS_00036942
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length536

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00036942 ID=TCONS_00036942|Name=TCONS_00036942|organism=Clytia hemisphaerica|type=transcript|length=536bp
CCACAAAATGTCCAAAATGATGACACATCGAGAATCCGCCGCAACCAACC
GGAACGATCACATTGAAAGCTACATTGCTGAAAACAACTATTGTAAAgcT
ACTCTGGATTCTATATCCAAATCAGCAACCAGCATGGGAAGCCTCACCAG
GGAGCTGATGGACGAAATTCTAACGGAGGAAGAGTTTGCCACCTGCACGG
TCAAAGGACAAGGCCAGACAGATCGGGGAGGAATCTCTCAGGAAAAGAGA
GAAATTATTGAAAAGTACGTCAAGAAACGATACGGGGAAAGTGCATCTGA
TCCTACCATCCGCACGTTCATGCGTCAGTATTTCACCAATCGGCGACGCA
CAAAGCCTGAAAATCGAAAGAAGGCTAGAGGAAACGAAGAGAGGGAGGAA
TAATTCGTGCTCACTGTAATTCGTTGTAATTTACTTGCAAATGTACTCTC
TATTTTATTAACACGAGcctagaaaattacaaaaattaagaacaattcaa
gggcGTCTCGCAACTAACAGCAGCCTTCCATAAGGG
Run BLAST on NCBI

protein sequence of TCONS_00036942-protein

>TCONS_00036942-protein ID=TCONS_00036942-protein|Name=TCONS_00036942-protein|organism=Clytia hemisphaerica|type=polypeptide|length=133bp
HKMSKMMTHRESAATNRNDHIESYIAENNYCKATLDSISKSATSMGSLTR
ELMDEILTEEEFATCTVKGQGQTDRGGISQEKREIIEKYVKKRYGESASD
PTIRTFMRQYFTNRRRTKPENRKKARGNEEREE
Run BLAST on NCBI

transcript from alignment at sc0001540:5585..7229-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00036942 ID=TCONS_00036942|Name=TCONS_00036942|organism=Clytia hemisphaerica|type=transcript|length=1645bp|location=Sequence derived from alignment at sc0001540:5585..7229- (Clytia hemisphaerica)
CCACAAAATGTCCAAAATGATGACACATCGAGAATCCGCCGCAACCAACC
GGGTAATTTAGTTATAAGCTCCTAAATGACTTTCTCGAGAATAAAGCAAA
TCATTTTAGTTCTGTAGTTTTTTTTGTTAACCAAATACAAAATGACTGTA
TTCTTTCAAATTCTGTGAAACTCACCCGGAGGGTATTCTTAGGGTATTCT
TACGATTTCGCCAATCTTAACACTGATATTCTTATAAAAGATATTCTTAT
TAAAACAAAAAGCGTGTAATAGGTCAATAATTTCCGAAAATAGGAGGGGT
TGATTAAAGTTTGGAGTTTCCCTTTTCAAGAATGGGGATAGGTAAAAATA
GGGACACTTTTGGAACCGTTGCACCCACTATGTCAGTATATTAATTTACT
TCTATTCCATCTTTTTAGAACGATCACATTGAAAGCTACATTGCTGAAAA
CAACTATTGTAAAGTAAGCTCACTCTAAATGATTTCTATAATGATTTTCC
TCCAGCTCCCACTGGAAAAATTGTCAAAATTGGTTGGAAAGATACCCTTA
ATGTTTACCCCATTCTAAAATTACCTTATTATGATTTTATCACCATGGGC
GATTAGTATTTGTTGAAAGGACTAGGGAAATTCGAAACAAAAATATGATA
TCACGTGGAGTAGCAAAAGTTTTGCCTCACACTTTTTTTCCTCACACGTT
TTGCTTACACTATGTTTTAGGAAAATAAATGAATAAGTAATTTATCTTTT
TTTTATTTCCAGGCTACTCTGGATTCTATATCCAAATCAGCAACCAGCAT
GGGAAGCCTCACCAGGGAGCTGATGGACGAAATTCTAACGGAGGAAGAGT
TTGCCACCTGCACGGTCAAAGGACAAGGCCAGACAGATCGGGGAGGAATC
TCTCAGGAAAAGAGAGAAATTATTGAAAGTAAGTGTATTTACCACAATAC
GGTTTTAAATCTTAAAATTTTATGTCTTTTTTTATATAAAAATATGTACT
AGAGGTATAATATGTAGTTCAGAATAGGGTTGCTATTTCAAAACTCTATG
TAATGTTAAATTAGGGATTACCTACCGAGTGTTTTAAAAAAAGTTAACAA
GTTTGAGTTTAGATTTTGAGAAAGCCAAAACTGATATTAGATATAAACTT
TTGTTGATTCATTTTATGGGGGTACATACTGTTTATGTATGTATTGCATA
TTACCCAAATTATTATCAATGCTGCCATACTCATTTAATGGGGATTTTCC
CGTAGAAAAAGGTTGAAATGCTGTAATTTCGGTTTCTTACGAGTCCTAGA
ATCTCCTAGAAAAGTGCAGTCGATTGGAAAACTTCTGGTTTAAAATACTC
TTTCCTTGTGTATTTTGTTTAGAGTACGTCAAGAAACGATACGGGGAAAG
TGCATCTGATCCTACCATCCGCACGTTCATGCGTCAGTATTTCACCAATC
GGCGACGCACAAAGCCTGAAAATCGAAAGAAGGCTAGAGGAAACGAAGAG
AGGGAGGAATAATTCGTGCTCACTGTAATTCGTTGTAATTTACTTGCAAA
TGTACTCTCTATTTTATTAACACGAGCCTAGAAAATTACAAAAATTAAGA
ACAATTCAAGGGCGTCTCGCAACTAACAGCAGCCTTCCATAAGGG

Coding sequence (CDS) from alignment at sc0001540:5585..7229-

>TCONS_00036942 ID=TCONS_00036942|Name=TCONS_00036942|organism=Clytia hemisphaerica|type=CDS|length=1608bp|location=Sequence derived from alignment at sc0001540:5585..7229- (Clytia hemisphaerica)
AGTACGTCAAGAAACGATACGGGGAAAGTGCATCTGATCCTACCATCCGC
ACGTTCATGCGTCAGTATTTCACCAATCGGCGACGCACAAAGCCTGAAAA
TCGAAAGAAGGCTAGAGGAAACGAAGAGAGGGAGGAATAAGCTACTCTGG
ATTCTATATCCAAATCAGCAACCAGCATGGGAAGCCTCACCAGGGAGCTG
ATGGACGAAATTCTAACGGAGGAAGAGTTTGCCACCTGCACGGTCAAAGG
ACAAGGCCAGACAGATCGGGGAGGAATCTCTCAGGAAAAGAGAGAAATTA
TTGAAAAACGATCACATTGAAAGCTACATTGCTGAAAACAACTATTGTAA
ACACAAAATGTCCAAAATGATGACACATCGAGAATCCGCCGCAACCAACC
GGAGTACGTCAAGAAACGATACGGGGAAAGTGCATCTGATCCTACCATCC
GCACGTTCATGCGTCAGTATTTCACCAATCGGCGACGCACAAAGCCTGAA
AATCGAAAGAAGGCTAGAGGAAACGAAGAGAGGGAGGAATAAGCTACTCT
GGATTCTATATCCAAATCAGCAACCAGCATGGGAAGCCTCACCAGGGAGC
TGATGGACGAAATTCTAACGGAGGAAGAGTTTGCCACCTGCACGGTCAAA
GGACAAGGCCAGACAGATCGGGGAGGAATCTCTCAGGAAAAGAGAGAAAT
TATTGAAAAACGATCACATTGAAAGCTACATTGCTGAAAACAACTATTGT
AAACACAAAATGTCCAAAATGATGACACATCGAGAATCCGCCGCAACCAA
CCGGAGTACGTCAAGAAACGATACGGGGAAAGTGCATCTGATCCTACCAT
CCGCACGTTCATGCGTCAGTATTTCACCAATCGGCGACGCACAAAGCCTG
AAAATCGAAAGAAGGCTAGAGGAAACGAAGAGAGGGAGGAATAAGCTACT
CTGGATTCTATATCCAAATCAGCAACCAGCATGGGAAGCCTCACCAGGGA
GCTGATGGACGAAATTCTAACGGAGGAAGAGTTTGCCACCTGCACGGTCA
AAGGACAAGGCCAGACAGATCGGGGAGGAATCTCTCAGGAAAAGAGAGAA
ATTATTGAAAAACGATCACATTGAAAGCTACATTGCTGAAAACAACTATT
GTAAACACAAAATGTCCAAAATGATGACACATCGAGAATCCGCCGCAACC
AACCGGAGTACGTCAAGAAACGATACGGGGAAAGTGCATCTGATCCTACC
ATCCGCACGTTCATGCGTCAGTATTTCACCAATCGGCGACGCACAAAGCC
TGAAAATCGAAAGAAGGCTAGAGGAAACGAAGAGAGGGAGGAATAAGCTA
CTCTGGATTCTATATCCAAATCAGCAACCAGCATGGGAAGCCTCACCAGG
GAGCTGATGGACGAAATTCTAACGGAGGAAGAGTTTGCCACCTGCACGGT
CAAAGGACAAGGCCAGACAGATCGGGGAGGAATCTCTCAGGAAAAGAGAG
AAATTATTGAAAAACGATCACATTGAAAGCTACATTGCTGAAAACAACTA
TTGTAAACACAAAATGTCCAAAATGATGACACATCGAGAATCCGCCGCAA
CCAACCGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_021823XLOC_021823Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00036942-exon-sc0001540-1575043694:7178..7229TCONS_00036942-exon-sc0001540-1575043694:7178..7229Clytia hemisphaericaexon
TCONS_00036942-exon-sc0001540-1575043694:6767..6811TCONS_00036942-exon-sc0001540-1575043694:6767..6811Clytia hemisphaericaexon
TCONS_00036942-exon-sc0001540-1575043694:6302..6467TCONS_00036942-exon-sc0001540-1575043694:6302..6467Clytia hemisphaericaexon
TCONS_00036942-exon-sc0001540-1575043694:5585..5857TCONS_00036942-exon-sc0001540-1575043694:5585..5857Clytia hemisphaericaexon
TCONS_00036942-exon-sc0001540-1510915933:7178..7229TCONS_00036942-exon-sc0001540-1510915933:7178..7229Clytia hemisphaericaexon
TCONS_00036942-exon-sc0001540-1510915933:6767..6811TCONS_00036942-exon-sc0001540-1510915933:6767..6811Clytia hemisphaericaexon
TCONS_00036942-exon-sc0001540-1510915933:6302..6467TCONS_00036942-exon-sc0001540-1510915933:6302..6467Clytia hemisphaericaexon
TCONS_00036942-exon-sc0001540-1510915933:5585..5857TCONS_00036942-exon-sc0001540-1510915933:5585..5857Clytia hemisphaericaexon
TCONS_00036942-exon-sc0001540-1491911889:7178..7229TCONS_00036942-exon-sc0001540-1491911889:7178..7229Clytia hemisphaericaexon
TCONS_00036942-exon-sc0001540-1491911889:6767..6811TCONS_00036942-exon-sc0001540-1491911889:6767..6811Clytia hemisphaericaexon
TCONS_00036942-exon-sc0001540-1491911889:6302..6467TCONS_00036942-exon-sc0001540-1491911889:6302..6467Clytia hemisphaericaexon
TCONS_00036942-exon-sc0001540-1491911889:5585..5857TCONS_00036942-exon-sc0001540-1491911889:5585..5857Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00036942-proteinTCONS_00036942-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001540supercontigsc0001540:5585..7229 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.770562	0.788372	0	0.600914	5.19094	5.57534	6.31117	8.03127	4.3258	6.97414	4.73773	6.12511	4.01708	6.52156	1.01866	0.937577	0.836255	1.38954	0	0.983412	0.834713	0.435659	0	0	4.08941	5.86435	0.797083	0.26149	0	0.482899
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR018379BEN_domain
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00036942 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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