TCONS_00036939 (transcript) - C. hemisphaerica

Overview
NameTCONS_00036939
Unique NameTCONS_00036939
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length396

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00036939 ID=TCONS_00036939|Name=TCONS_00036939|organism=Clytia hemisphaerica|type=transcript|length=396bp
TGCCGCATAGAAATCGTCCAGTCATTACCGACCAAATATGCCAAGGGATT
GAATACATTAAGTTCCCAATACATATGACACCCAAATTGAGCAAAAACAC
AAATCTTAAATTTCGCGTACGATCAATGTATCGTCCAAAAAGTATTCCGC
TTATAAGATTACTAACAGCGAATAAAGTCTCCattacactgtaataaaat
gtTGCTTGAAGTAAAGATAACCCAAAGTTCTCCGAGAAGTAGTAGAGTAC
AGTCACTTCCAGTGCTTGGCTTTCAATTCCGTAGAGGAGAATCAGAATAC
ATGCGAGAGCTGTAGTTCGAGTTCTATTTTTCTTCCATTCGAGATATTCC
AATGAGGTTTCCATTATATGATTTCCAGTAACCTTTTGTATTCCTc
Run BLAST on NCBI

protein sequence of TCONS_00036939-protein

>TCONS_00036939-protein ID=TCONS_00036939-protein|Name=TCONS_00036939-protein|organism=Clytia hemisphaerica|type=polypeptide|length=131bp
GIQKVTGNHIMETSLEYLEWKKNRTRTTALACILILLYGIESQALEVTVL
YYFSENFGLSLLQATFYYSVMETLFAVSNLISGILFGRYIDRTRNLRFVF
LLNLGVICIGNLMYSIPWHIWSVMTGRFLCG
Run BLAST on NCBI

transcript from alignment at sc0001539:20444..20839

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00036939 ID=TCONS_00036939|Name=TCONS_00036939|organism=Clytia hemisphaerica|type=transcript|length=396bp|location=Sequence derived from alignment at sc0001539:20444..20839 (Clytia hemisphaerica)
gAGGAATACAAAAGGTTACTGGAAATCATATAATGGAAACCTCATTGGAA
TATCTCGAATGGAAGAAAAATAGAACTCGAACTACAGCTCTCGCATGTAT
TCTGATTCTCCTCTACGGAATTGAAAGCCAAGCACTGGAAGTGACTGTAC
TCTACTACTTCTCGGAGAACTTTGGGTTATCTTTACTTCAAGCAacattt
tattacagtgtaatGGAGACTTTATTCGCTGTTAGTAATCTTATAAGCGG
AATACTTTTTGGACGATACATTGATCGTACGCGAAATTTAAGATTTGTGT
TTTTGCTCAATTTGGGTGTCATATGTATTGGGAACTTAATGTATTCAATC
CCTTGGCATATTTGGTCGGTAATGACTGGACGATTTCTATGCGGCA

Coding sequence (CDS) from alignment at sc0001539:20444..20839

>TCONS_00036939 ID=TCONS_00036939|Name=TCONS_00036939|organism=Clytia hemisphaerica|type=CDS|length=393bp|location=Sequence derived from alignment at sc0001539:20444..20839 (Clytia hemisphaerica)
GGAATACAAAAGGTTACTGGAAATCATATAATGGAAACCTCATTGGAATA
TCTCGAATGGAAGAAAAATAGAACTCGAACTACAGCTCTCGCATGTATTC
TGATTCTCCTCTACGGAATTGAAAGCCAAGCACTGGAAGTGACTGTACTC
TACTACTTCTCGGAGAACTTTGGGTTATCTTTACTTCAAGCAacatttta
ttacagtgtaatGGAGACTTTATTCGCTGTTAGTAATCTTATAAGCGGAA
TACTTTTTGGACGATACATTGATCGTACGCGAAATTTAAGATTTGTGTTT
TTGCTCAATTTGGGTGTCATATGTATTGGGAACTTAATGTATTCAATCCC
TTGGCATATTTGGTCGGTAATGACTGGACGATTTCTATGCGGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_021820XLOC_021820Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00036939-proteinTCONS_00036939-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00036939-exon-sc0001539-1491911889:20444..20839TCONS_00036939-exon-sc0001539-1491911889:20444..20839Clytia hemisphaericaexon
TCONS_00036939-exon-sc0001539-1510915933:20444..20839TCONS_00036939-exon-sc0001539-1510915933:20444..20839Clytia hemisphaericaexon
TCONS_00036939-exon-sc0001539-1575043694:20444..20839TCONS_00036939-exon-sc0001539-1575043694:20444..20839Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001539supercontigsc0001539:20444..20839 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.235332	0	0.210159	0.708051	0.0214396	0.674759	1.41716	1.43571	4.72984	1.40809	1.97007	4.12836	4.74595	6.644	5.1775	4.30087	0.986059	13.5462	6.57277	0.143118	0.453957	0	0.682997	0	0.866569	0	0	0.210575	0.164956
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR011701MFS
IPR020846MFS_dom
Vocabulary: Biological Process
TermDefinition
GO:0055085transmembrane transport
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0055085 transmembrane transport
cellular_component GO:0016021 integral component of membrane
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00036939 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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