TCONS_00036938 (transcript) - C. hemisphaerica

Overview
NameTCONS_00036938
Unique NameTCONS_00036938
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1665

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00036938 ID=TCONS_00036938|Name=TCONS_00036938|organism=Clytia hemisphaerica|type=transcript|length=1665bp
aatcgacCCAGAaagctaaatttgaaaaaaattgaagtgtGAATTATGTA
AATATCTTCATGTTccgaaaaaacggttttttcacACAGCATGCAGTTAT
GTATAgtgaacaataaaaaaaaaacagctcaTGTGAGAGAACTGTCTCTC
AATCATTTTCACTTGACAAGATTGCAAGATGGGATTCAGAGATGAGTTTC
GGTGCTCGAGTTTTGGTTTTGAGGGTGTGGAAAGATCAACACTCTACAAA
TCTTACATCAATGTTCCACGGTGGTTTCGTCTTTCATCGCTCGGTGTTAC
GTGCGTCTACACATTTTCCATGATGATTGCTTCCATTGTGATTACGACTA
TGGAAGTACATAATAGTGGCTGGTTTCATTTTATGACGTCATGGAATTAT
ATGGTCAATTTCACTTATTTCATCATCGCCTTTGTTAAACATCTTCAATA
TCAAGGTGATGCTGATGAAGGGTACGAAGTGATCAGAGACGAAAATGTGG
GTCTAATGGCTGGTGACGAAAGCAAACACGAGGTGTTTATGGAAAAAGGA
TTTGTCCTCAGCGATCCCCTTGTCCTCGATACAATCCCTTCCAAATTGTC
AATAAGTGACAAATTCTATTTGTTCTTTCATTCTCTGGCTTTCTTAATGT
CCTCCGTGGTCGTTGTAGTATACTGGCCAATCCTGTTCGATCCATCTTCA
TTTGAAACCGATTTTTATTGGTTCCAAGCAATTGATCGACACGGGATTGT
ATATCTCTTGTTTATTTTCCAATACATCTTCAACAAGATTCCAATCCATA
TATTCCATTGTGTGTATGCTATCGCAGTTGGTGTCATATTTTTTATTCAC
ACCTATATTTATTACTTGGTGACCAGCAGGTTGGTTTATTCCATCTTTGA
TTGGGGTAATGCACCTTTGAAAGCGTTCTACTACTTCCTGGGGATTGTTG
GGTTGGCTCTCATACTACAATTCATCTTATACGGTATTGATCGATTTAAG
CATTGGCTTGGTAATCGAAAATGAACGAAATCGTCGAATGATAATTATTC
TCACGAGCTAATAACATTTTCTGAATTTCTTTTGGGGCATGAGTTTTAGC
ATTTTCACGTCATTCTTTAGCATTTCAACgcgaaaaaaatcaagttgtAG
ATCCCATGCAGCATACATATATCTTTAATGTTCCATAAATGTATATCTTT
AATGTTCAATCTCCCCAATATTATAATTGTAGTTTTATCTTAGATTTTAG
AATATTATAATTTTATATTGTAAAGTTAAGTTTAAAGGCCTTTTTCTATA
TAATTTTCGCGATATTGGTTGATTTGAACTAAAACCAGATAGTATCTATA
TTTCTTATTAATTGGTACTTCACTTGTTCTCaccttcaaaatataaaaac
gtGGATTAATGGAACGCCAATGGAAGTCAATAATGAAAGAAACTTTTTAC
Tatgattacaatatagtcaataactttggaatttgatggatacatgtttt
ttatgtaagtgtttatttcaggctcgcattatgctcgCATTCGATtattc
ttaaacaatagaaccaTTATTTAGGTATCAACTGATACTGCATTAtaata
aacgttatgcttataaaaaacatgtaaaagcTTGATGATAATTTGACGGT
CATTTTAACAATATC
Run BLAST on NCBI

transcript from alignment at sc0001539:3750..7048-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00036938 ID=TCONS_00036938|Name=TCONS_00036938|organism=Clytia hemisphaerica|type=transcript|length=3299bp|location=Sequence derived from alignment at sc0001539:3750..7048- (Clytia hemisphaerica)
AATCGACCCAGAAAGCTAAATTTGAAAAAAATTGAAGTGTGAATTATGTA
AATATCTTCATGTTCCGAAAAAACGGTTTTTTCACACAGCATGCAGTTAT
GTATAGTGAACAATAAAAAAAAAACAGCTCATGTGAGAGAACTGTCTCTC
AATCATTTTCACTTGACAAGATTGCAAGATGGGATTCAGAGATGAGTTTC
GGTGCTCGAGTTTTGGTTTTGAGGGTGTGGAAAGATCAACACTCTACAAA
TCTTACGTGAGTTTTACCAATATTCATAAGTGTTAACTCACTCTCTAATT
CAAACCTCTATTATTCGAATCCCCTTGAAGATCGAATTAGAGAGGGCCAA
CTGTAAACGGGTTTCCTATCAAATTCAGTGGGGATGGAAAAAATAGCAAA
ATATTCTGTAGTGAGAATAATACTTTGGCTAATTTTTCCTGTAGGTGGGG
GTCCTCCCGGGTCTGTGAGAAGGGGATGTAATATTGAAGTCTAGCTGAAC
CTACAATCAGGGTCGAAATATATTGGGAATTTTGGTTAATTCCTCGTTTT
CAACAATTTAAAGTTTGGGCGAAAAAGTCGCTTTTGGGCAAAATGATAAA
TTTATATTCGAATATTTCATAGACTTCCAGGCTATATTCTGAGTCCTATT
GGACCATTCTTGGACTTTTTAAGTCTAGCGTTCAAATTCAGAGTTAAGAC
TATACCCGCCCAACCTAATTTAGAGCGCTTCCAAATCGTTTGTGGCTGTA
AGATTTCGTGGGAATTTCTCTTTTTCTCAAATATTATGACTTTGATTGTA
CTTTCAACCATAGATCAATGTTCCACGGTGGTTTCGTCTTTCATCGCTCG
GTGTTACGTGCGTCTACACATTTTCCATGATGATTGCTTCCATTGTGATT
ACGACTATGGAAGTACATAATAGTGGCTGGTTTCATTTTATGACGTCATG
GAATTATATGGTCAATTTCACTTATTTCATCATCGCCTTTGTTAAACATC
TTCAATATCAAGGTTTGTATTGACATTCATTAGTTCACTGATCTGATTTA
TTTGCGATGTTAAGTATTTTCTAGTCTTCGTTCGCCCCACGCACTTTTCT
ACGGGCTGGTCGGAAAGCAAGCTAGACTTACCCCGCAAAGAAATCAACCA
GAATGAATTTCGGATAGCGGATACACAAAGTGGGGAAGGTGCAGCTTGTT
TTTGATCAGCCTGTAAAAAAGTGCCGTGGCGCGAATGAAGGCTGGAGAAA
ATTCGCCCGTCGTCGTGATTTATCTATCGATACCTAACCTCACTATTTGA
ACTTGTTTTAGGGTTTCTGTTGGGCGTTTTCAGACATCAGTCAGCGCAGC
TCTGGCCAGAGTTCAAAATGCAAAGATAGCTCTATTAGCATACTCAAAAC
TTATTTAATTTAACCTCTTACCCAAAAAGTACGCCCCAGAGATAATAAAA
ACCGAAGGTATTTTGAAAATGTTAGGTCATCCCCAGTTTTAACCACGATA
TATACACATAACCTCTCTCGATTGGGGCAGGGGTTAGGAGCGAACTTGAT
ATGAAAAACTACTTTAAATTACTATTACCATTATCCGGCCAAAAATCAGG
CCTCAACTTTGGTAGGACGCTCACCTTTCAGTGCTTCCCCCAGGAATATC
GAGTACTCGACTACTTTATGGCGTTTAGGGTTGATAGCCACTGTTATCGA
TAATTCTATTCCTTTTTACAATTTTTTCGAAATTTGAGAGCTCAGGTTTT
TGGGCTCCAAACATTCAATTTTTGGATGTCACTAAAACTCTAGTAACTCT
TGCAGTAGCGGAAAAATCGAATTNATCGATAATTCTATTCCTTTTTACGA
TTTTTTCAAAATTTGAGAGCTCAGGTTTTTGGGCTCCAAACATTCAATTT
TTGGATGTCACTAAAACTCTAGTAACTCTTGCAGTAGCAGAAAAATCGAA
TTTTGTATATTTTTTGGTAAGGTATTCGCTAAAGGCTGCTACTAGGTGTA
TAGAGTCAATTCAAGTCAGTCATAAAATATCCTCAGTCCTGGTAGGAGTT
TATTATGAAAAGACCATTAAAGTTGTGTTTCATCCATAGGTGATGCTGAT
GAAGGGTACGAAGTGATCAGAGACGAAAATGTGGGTCTAATGGCTGGTGA
CGAAAGCAAACACGAGGTGTTTATGGAAAAAGGATTTGTCCTCAGCGATC
CCCTTGTCCTCGATACAATCCCTTCCAAATTGTCAATAAGTGACAAATTC
TATTTGTTCTTTCATTCTCTGGCTTTCTTAATGTCCTCCGTGGTCGTTGT
AGTATACTGGCCAATCCTGTTCGATCCATCTTCATTTGAAACCGATTTTT
ATTGGTTCCAAGCAATTGATCGACACGGGATTGTATATCTCTTGTTTATT
TTCCAATACATCTTCAACAAGATTCCAATCCATATATTCCATTGTGTGTA
TGCTATCGCAGTTGGTGTCATATTTTTTATTCACACCTATATTTATTACT
TGGTGACCAGCAGGTTGGTTTATTCCATCTTTGATTGGGGTAATGCACCT
TTGAAAGCGTTCTACTACTTCCTGGGGATTGTTGGGTTGGCTCTCATACT
ACAATTCATCTTATACGGTATTGATCGATTTAAGCATTGGCTTGGTAATC
GAAAATGAACGAAATCGTCGAATGATAATTATTCTCACGAGCTAATAACA
TTTTCTGAATTTCTTTTGGGGCATGAGTTTTAGCATTTTCACGTCATTCT
TTAGCATTTCAACGCGAAAAAAATCAAGTTGTAGATCCCATGCAGCATAC
ATATATCTTTAATGTTCCATAAATGTATATCTTTAATGTTCAATCTCCCC
AATATTATAATTGTAGTTTTATCTTAGATTTTAGAATATTATAATTTTAT
ATTGTAAAGTTAAGTTTAAAGGCCTTTTTCTATATAATTTTCGCGATATT
GGTTGATTTGAACTAAAACCAGATAGTATCTATATTTCTTATTAATTGGT
ACTTCACTTGTTCTCACCTTCAAAATATAAAAACGTGGATTAATGGAACG
CCAATGGAAGTCAATAATGAAAGAAACTTTTTACTATGATTACAATATAG
TCAATAACTTTGGAATTTGATGGATACATGTTTTTTATGTAAGTGTTTAT
TTCAGGCTCGCATTATGCTCGCATTCGATTATTCTTAAACAATAGAACCA
TTATTTAGGTATCAACTGATACTGCATTATAATAAACGTTATGCTTATAA
AAAACATGTAAAAGCTTGATGATAATTTGACGGTCATTTTAACAATATC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_021819XLOC_021819Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00036938-exon-sc0001539-1575043694:6793..7048TCONS_00036938-exon-sc0001539-1575043694:6793..7048Clytia hemisphaericaexon
TCONS_00036938-exon-sc0001539-1575043694:6037..6235TCONS_00036938-exon-sc0001539-1575043694:6037..6235Clytia hemisphaericaexon
TCONS_00036938-exon-sc0001539-1575043694:3750..4959TCONS_00036938-exon-sc0001539-1575043694:3750..4959Clytia hemisphaericaexon
TCONS_00036938-exon-sc0001539-1510915933:6793..7048TCONS_00036938-exon-sc0001539-1510915933:6793..7048Clytia hemisphaericaexon
TCONS_00036938-exon-sc0001539-1510915933:6037..6235TCONS_00036938-exon-sc0001539-1510915933:6037..6235Clytia hemisphaericaexon
TCONS_00036938-exon-sc0001539-1510915933:3750..4959TCONS_00036938-exon-sc0001539-1510915933:3750..4959Clytia hemisphaericaexon
TCONS_00036938-exon-sc0001539-1491911889:6793..7048TCONS_00036938-exon-sc0001539-1491911889:6793..7048Clytia hemisphaericaexon
TCONS_00036938-exon-sc0001539-1491911889:6037..6235TCONS_00036938-exon-sc0001539-1491911889:6037..6235Clytia hemisphaericaexon
TCONS_00036938-exon-sc0001539-1491911889:3750..4959TCONS_00036938-exon-sc0001539-1491911889:3750..4959Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001539supercontigsc0001539:3750..7048 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.102919	0	0	11.8331	10.2303	37.6446	35.1126	52.1133	39.3932	46.5136	43.2173	11.0616	10.1307	6.37205	3.38898	5.17371	5.2916	6.4074	4.04712	15.1184	11.3412	4.83442	4.77247	7.33361	6.14728	1.3357	0.374394	0.0789129	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00036938 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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