TCONS_00036937 (transcript) - C. hemisphaerica

Overview
NameTCONS_00036937
Unique NameTCONS_00036937
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1166

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00036937 ID=TCONS_00036937|Name=TCONS_00036937|organism=Clytia hemisphaerica|type=transcript|length=1166bp
TTTTCACTTGACAAGATTGCAAGATGGGATTCAGAGATGAGTTTCGGTGC
TCGAGTTTTGGTTTTGAGGGTGTGGAAAGATCAACACTCTACAAATCTTA
CATCAATGTTCCACGGTGGTTTCGTCTTTCATCGCTCGGTGTTACGTGCG
TCTACACATTTTCCATGATGATTGCTTCCATTGTGATTACGACTATGGAA
GTACATAATAGTGGCTGGTTTCATTTTATGACGTCATGGAATTATATGGT
CAATTTCACTTATTTCATCATCGCCTTTGTTAAACATCTTCAATATCAAG
GTGATGCTGATGAAGGGTACGAAGTGATCAGAGACGAAAATGTGGGTCTA
ATGGCTGGTGACGAAAGCAAACACGAGCAGGTTGGTTTATTCCATCTTTG
ATTGGGGTAATGCACCTTTGAAAGCGTTCTACTACTTCCTGGGGATTGTT
GGGTTGGCTCTCATACTACAATTCATCTTATACGGTATTGATCGATTTAA
GCATTGGCTTGGTAATCGAAAATGAACGAAATCGTCGAATGATAATTATT
CTCACGAGCTAATAACATTTTCTGAATTTCTTTTGGGGCATGAGTTTTAG
CATTTTCACGTCATTCTTTAGCATTTCAACgcgaaaaaaatcaagttgtA
GATCCCATGCAGCATACATATATCTTTAATGTTCCATAAATGTATATCTT
TAATGTTCAATCTCCCCAATATTATAATTGTAGTTTTATCTTAGATTTTA
GAATATTATAATTTTATATTGTAAAGTTAAGTTTAAAGGCCTTTTTCTAT
ATAATTTTCGCGATATTGGTTGATTTGAACTAAAACCAGATAGTATCTAT
ATTTCTTATTAATTGGTACTTCACTTGTTCTCaccttcaaaatataaaaa
cgtGGATTAATGGAACGCCAATGGAAGTCAATAATGAAAGAAACTTTTTA
CTatgattacaatatagtcaataactttggaatttgatggatacatgttt
tttatgtaagtgtttatttcaggctcgcattatgctcgCATTCGATtatt
cttaaacaatagaaccaTTATTTAGGTATCAACTGATACTGCATTAtaat
aaacgttatgcttataaaaaacatgtaaaagcTTGATGATAATTTGACGG
TCATTTTAACAATATC
Run BLAST on NCBI

protein sequence of TCONS_00036937-protein

>TCONS_00036937-protein ID=TCONS_00036937-protein|Name=TCONS_00036937-protein|organism=Clytia hemisphaerica|type=polypeptide|length=125bp
MGFRDEFRCSSFGFEGVERSTLYKSYINVPRWFRLSSLGVTCVYTFSMMI
ASIVITTMEVHNSGWFHFMTSWNYMVNFTYFIIAFVKHLQYQGDADEGYE
VIRDENVGLMAGDESKHEQVGLFHL
Run BLAST on NCBI

transcript from alignment at sc0001539:3750..6893-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00036937 ID=TCONS_00036937|Name=TCONS_00036937|organism=Clytia hemisphaerica|type=transcript|length=3144bp|location=Sequence derived from alignment at sc0001539:3750..6893- (Clytia hemisphaerica)
TTTTCACTTGACAAGATTGCAAGATGGGATTCAGAGATGAGTTTCGGTGC
TCGAGTTTTGGTTTTGAGGGTGTGGAAAGATCAACACTCTACAAATCTTA
CGTGAGTTTTACCAATATTCATAAGTGTTAACTCACTCTCTAATTCAAAC
CTCTATTATTCGAATCCCCTTGAAGATCGAATTAGAGAGGGCCAACTGTA
AACGGGTTTCCTATCAAATTCAGTGGGGATGGAAAAAATAGCAAAATATT
CTGTAGTGAGAATAATACTTTGGCTAATTTTTCCTGTAGGTGGGGGTCCT
CCCGGGTCTGTGAGAAGGGGATGTAATATTGAAGTCTAGCTGAACCTACA
ATCAGGGTCGAAATATATTGGGAATTTTGGTTAATTCCTCGTTTTCAACA
ATTTAAAGTTTGGGCGAAAAAGTCGCTTTTGGGCAAAATGATAAATTTAT
ATTCGAATATTTCATAGACTTCCAGGCTATATTCTGAGTCCTATTGGACC
ATTCTTGGACTTTTTAAGTCTAGCGTTCAAATTCAGAGTTAAGACTATAC
CCGCCCAACCTAATTTAGAGCGCTTCCAAATCGTTTGTGGCTGTAAGATT
TCGTGGGAATTTCTCTTTTTCTCAAATATTATGACTTTGATTGTACTTTC
AACCATAGATCAATGTTCCACGGTGGTTTCGTCTTTCATCGCTCGGTGTT
ACGTGCGTCTACACATTTTCCATGATGATTGCTTCCATTGTGATTACGAC
TATGGAAGTACATAATAGTGGCTGGTTTCATTTTATGACGTCATGGAATT
ATATGGTCAATTTCACTTATTTCATCATCGCCTTTGTTAAACATCTTCAA
TATCAAGGTTTGTATTGACATTCATTAGTTCACTGATCTGATTTATTTGC
GATGTTAAGTATTTTCTAGTCTTCGTTCGCCCCACGCACTTTTCTACGGG
CTGGTCGGAAAGCAAGCTAGACTTACCCCGCAAAGAAATCAACCAGAATG
AATTTCGGATAGCGGATACACAAAGTGGGGAAGGTGCAGCTTGTTTTTGA
TCAGCCTGTAAAAAAGTGCCGTGGCGCGAATGAAGGCTGGAGAAAATTCG
CCCGTCGTCGTGATTTATCTATCGATACCTAACCTCACTATTTGAACTTG
TTTTAGGGTTTCTGTTGGGCGTTTTCAGACATCAGTCAGCGCAGCTCTGG
CCAGAGTTCAAAATGCAAAGATAGCTCTATTAGCATACTCAAAACTTATT
TAATTTAACCTCTTACCCAAAAAGTACGCCCCAGAGATAATAAAAACCGA
AGGTATTTTGAAAATGTTAGGTCATCCCCAGTTTTAACCACGATATATAC
ACATAACCTCTCTCGATTGGGGCAGGGGTTAGGAGCGAACTTGATATGAA
AAACTACTTTAAATTACTATTACCATTATCCGGCCAAAAATCAGGCCTCA
ACTTTGGTAGGACGCTCACCTTTCAGTGCTTCCCCCAGGAATATCGAGTA
CTCGACTACTTTATGGCGTTTAGGGTTGATAGCCACTGTTATCGATAATT
CTATTCCTTTTTACAATTTTTTCGAAATTTGAGAGCTCAGGTTTTTGGGC
TCCAAACATTCAATTTTTGGATGTCACTAAAACTCTAGTAACTCTTGCAG
TAGCGGAAAAATCGAATTNATCGATAATTCTATTCCTTTTTACGATTTTT
TCAAAATTTGAGAGCTCAGGTTTTTGGGCTCCAAACATTCAATTTTTGGA
TGTCACTAAAACTCTAGTAACTCTTGCAGTAGCAGAAAAATCGAATTTTG
TATATTTTTTGGTAAGGTATTCGCTAAAGGCTGCTACTAGGTGTATAGAG
TCAATTCAAGTCAGTCATAAAATATCCTCAGTCCTGGTAGGAGTTTATTA
TGAAAAGACCATTAAAGTTGTGTTTCATCCATAGGTGATGCTGATGAAGG
GTACGAAGTGATCAGAGACGAAAATGTGGGTCTAATGGCTGGTGACGAAA
GCAAACACGAGGTGTTTATGGAAAAAGGATTTGTCCTCAGCGATCCCCTT
GTCCTCGATACAATCCCTTCCAAATTGTCAATAAGTGACAAATTCTATTT
GTTCTTTCATTCTCTGGCTTTCTTAATGTCCTCCGTGGTCGTTGTAGTAT
ACTGGCCAATCCTGTTCGATCCATCTTCATTTGAAACCGATTTTTATTGG
TTCCAAGCAATTGATCGACACGGGATTGTATATCTCTTGTTTATTTTCCA
ATACATCTTCAACAAGATTCCAATCCATATATTCCATTGTGTGTATGCTA
TCGCAGTTGGTGTCATATTTTTTATTCACACCTATATTTATTACTTGGTG
ACCAGCAGGTTGGTTTATTCCATCTTTGATTGGGGTAATGCACCTTTGAA
AGCGTTCTACTACTTCCTGGGGATTGTTGGGTTGGCTCTCATACTACAAT
TCATCTTATACGGTATTGATCGATTTAAGCATTGGCTTGGTAATCGAAAA
TGAACGAAATCGTCGAATGATAATTATTCTCACGAGCTAATAACATTTTC
TGAATTTCTTTTGGGGCATGAGTTTTAGCATTTTCACGTCATTCTTTAGC
ATTTCAACGCGAAAAAAATCAAGTTGTAGATCCCATGCAGCATACATATA
TCTTTAATGTTCCATAAATGTATATCTTTAATGTTCAATCTCCCCAATAT
TATAATTGTAGTTTTATCTTAGATTTTAGAATATTATAATTTTATATTGT
AAAGTTAAGTTTAAAGGCCTTTTTCTATATAATTTTCGCGATATTGGTTG
ATTTGAACTAAAACCAGATAGTATCTATATTTCTTATTAATTGGTACTTC
ACTTGTTCTCACCTTCAAAATATAAAAACGTGGATTAATGGAACGCCAAT
GGAAGTCAATAATGAAAGAAACTTTTTACTATGATTACAATATAGTCAAT
AACTTTGGAATTTGATGGATACATGTTTTTTATGTAAGTGTTTATTTCAG
GCTCGCATTATGCTCGCATTCGATTATTCTTAAACAATAGAACCATTATT
TAGGTATCAACTGATACTGCATTATAATAAACGTTATGCTTATAAAAAAC
ATGTAAAAGCTTGATGATAATTTGACGGTCATTTTAACAATATC

Coding sequence (CDS) from alignment at sc0001539:3750..6893-

>TCONS_00036937 ID=TCONS_00036937|Name=TCONS_00036937|organism=Clytia hemisphaerica|type=CDS|length=1512bp|location=Sequence derived from alignment at sc0001539:3750..6893- (Clytia hemisphaerica)
CAGGTTGGTTTATTCCATCTTTGAGTGATGCTGATGAAGGGTACGAAGTG
ATCAGAGACGAAAATGTGGGTCTAATGGCTGGTGACGAAAGCAAACACGA
GATCAATGTTCCACGGTGGTTTCGTCTTTCATCGCTCGGTGTTACGTGCG
TCTACACATTTTCCATGATGATTGCTTCCATTGTGATTACGACTATGGAA
GTACATAATAGTGGCTGGTTTCATTTTATGACGTCATGGAATTATATGGT
CAATTTCACTTATTTCATCATCGCCTTTGTTAAACATCTTCAATATCAAG
ATGGGATTCAGAGATGAGTTTCGGTGCTCGAGTTTTGGTTTTGAGGGTGT
GGAAAGATCAACACTCTACAAATCTTACCAGGTTGGTTTATTCCATCTTT
GAGTGATGCTGATGAAGGGTACGAAGTGATCAGAGACGAAAATGTGGGTC
TAATGGCTGGTGACGAAAGCAAACACGAGATCAATGTTCCACGGTGGTTT
CGTCTTTCATCGCTCGGTGTTACGTGCGTCTACACATTTTCCATGATGAT
TGCTTCCATTGTGATTACGACTATGGAAGTACATAATAGTGGCTGGTTTC
ATTTTATGACGTCATGGAATTATATGGTCAATTTCACTTATTTCATCATC
GCCTTTGTTAAACATCTTCAATATCAAGATGGGATTCAGAGATGAGTTTC
GGTGCTCGAGTTTTGGTTTTGAGGGTGTGGAAAGATCAACACTCTACAAA
TCTTACCAGGTTGGTTTATTCCATCTTTGAGTGATGCTGATGAAGGGTAC
GAAGTGATCAGAGACGAAAATGTGGGTCTAATGGCTGGTGACGAAAGCAA
ACACGAGATCAATGTTCCACGGTGGTTTCGTCTTTCATCGCTCGGTGTTA
CGTGCGTCTACACATTTTCCATGATGATTGCTTCCATTGTGATTACGACT
ATGGAAGTACATAATAGTGGCTGGTTTCATTTTATGACGTCATGGAATTA
TATGGTCAATTTCACTTATTTCATCATCGCCTTTGTTAAACATCTTCAAT
ATCAAGATGGGATTCAGAGATGAGTTTCGGTGCTCGAGTTTTGGTTTTGA
GGGTGTGGAAAGATCAACACTCTACAAATCTTACCAGGTTGGTTTATTCC
ATCTTTGAGTGATGCTGATGAAGGGTACGAAGTGATCAGAGACGAAAATG
TGGGTCTAATGGCTGGTGACGAAAGCAAACACGAGATCAATGTTCCACGG
TGGTTTCGTCTTTCATCGCTCGGTGTTACGTGCGTCTACACATTTTCCAT
GATGATTGCTTCCATTGTGATTACGACTATGGAAGTACATAATAGTGGCT
GGTTTCATTTTATGACGTCATGGAATTATATGGTCAATTTCACTTATTTC
ATCATCGCCTTTGTTAAACATCTTCAATATCAAGATGGGATTCAGAGATG
AGTTTCGGTGCTCGAGTTTTGGTTTTGAGGGTGTGGAAAGATCAACACTC
TACAAATCTTAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_021819XLOC_021819Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00036937-exon-sc0001539-1575043694:6793..6893TCONS_00036937-exon-sc0001539-1575043694:6793..6893Clytia hemisphaericaexon
TCONS_00036937-exon-sc0001539-1575043694:6037..6235TCONS_00036937-exon-sc0001539-1575043694:6037..6235Clytia hemisphaericaexon
TCONS_00036937-exon-sc0001539-1575043694:4883..4959TCONS_00036937-exon-sc0001539-1575043694:4883..4959Clytia hemisphaericaexon
TCONS_00036937-exon-sc0001539-1575043694:3750..4538TCONS_00036937-exon-sc0001539-1575043694:3750..4538Clytia hemisphaericaexon
TCONS_00036937-exon-sc0001539-1510915933:6793..6893TCONS_00036937-exon-sc0001539-1510915933:6793..6893Clytia hemisphaericaexon
TCONS_00036937-exon-sc0001539-1510915933:6037..6235TCONS_00036937-exon-sc0001539-1510915933:6037..6235Clytia hemisphaericaexon
TCONS_00036937-exon-sc0001539-1510915933:4883..4959TCONS_00036937-exon-sc0001539-1510915933:4883..4959Clytia hemisphaericaexon
TCONS_00036937-exon-sc0001539-1510915933:3750..4538TCONS_00036937-exon-sc0001539-1510915933:3750..4538Clytia hemisphaericaexon
TCONS_00036937-exon-sc0001539-1491911889:6793..6893TCONS_00036937-exon-sc0001539-1491911889:6793..6893Clytia hemisphaericaexon
TCONS_00036937-exon-sc0001539-1491911889:6037..6235TCONS_00036937-exon-sc0001539-1491911889:6037..6235Clytia hemisphaericaexon
TCONS_00036937-exon-sc0001539-1491911889:4883..4959TCONS_00036937-exon-sc0001539-1491911889:4883..4959Clytia hemisphaericaexon
TCONS_00036937-exon-sc0001539-1491911889:3750..4538TCONS_00036937-exon-sc0001539-1491911889:3750..4538Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00036937-proteinTCONS_00036937-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001539supercontigsc0001539:3750..6893 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0906657	0	0	0.0410656	2.78869	0	17.9541	21.5321	1.68474	4.63799	0	1.74961	0	0.16121	0	0.647314	1.66215	2.21805	0	0.572894	7.5285	7.99491	2.58326	4.51406	0.477625	0.171497	0	0.0168148	0.0445276	0.274912
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00036937 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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