TCONS_00036931 (transcript) - C. hemisphaerica

Overview
NameTCONS_00036931
Unique NameTCONS_00036931
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3297

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00036931 ID=TCONS_00036931|Name=TCONS_00036931|organism=Clytia hemisphaerica|type=transcript|length=3297bp
AAATAAAGTTCGTTGTTGAactattgacattttaatccTGACTGCAAGAt
ataataaaatttctttatagTCCAAAACAAAATGACACACTGTTTTAAAG
GCGTTGTATCAGCTTCCTATTGCTTagtattgaattaaaaaaacatacTG
ACAGCGAAGGTCAAGTCGACGTGCAGTGTATTACTCAAGTTTCGATGAGG
ATGAGGCTACAGTGTAACAAGTAGGGAGTCGAATATGTAATCATAGAATA
TAATATAGTTTTATAAATACATCACAGGAAGTTGTATGGATATTGCTTTT
ATAACAATCAAGTAAAATTTGAGTGATGAACTCATCAACTTtaaggtcat
aatttgaaaataGCTCACGAAGTTATCCATCAAGAAAAGGGCGTCGTCCT
ATAAAACAGCAAAAACAGTCGTTTCAGACTTCATTGGTGTTAAGGATTTT
TATGAAACAAAATCAGGGTTTGTTAGATTAGCTTAGTAGTATTAACATTA
ATAGATTTAAATTCTGTGTCTGAGGTTTTTTTCGTCAAACAATAGATTTG
AATAGGTTAATTAACGTACTTATCTTGTTAATGTCTACTTGTTGGCAACA
ACTATAACCGGATTAACCCTATGAGCACGCAACATCTTATGGACATTCAA
TAGACGGCTTTAAGACCTTTGAacgtcctagaaacgtacattagacgtcc
aaaagacgtttgtgTCCATTGGGAAGGAGATCGTTGAGCGGACTTTTGGA
TAGTAAGCCGTATGTAGGGATTTCTATTTTTGCAACCTTAAATTTATGGT
CTGACGGTTTGATATCAGTTTAATtttacagggtgtccggaaaaaaagta
tcgagtcgtaccacttctatagaaagaaagttctatagtgtgtgtttcac
taaatttgtaATGTTTCTCTAAATTTGTAATGTTTCTCtttgtgtcatat
taattgtgATGGGACATCTTTTATGCATAACTTTtacgaaaaacaaataa
ctttaacgtcatgaaaattgtaaagaaagttaattatttctaatcataat
gactgttgtaaaaacaattgttttgtttgttcagtatatattttcttaca
ttttgttaaacacacgcgacaaccttctactcagaatcatgttcgatact
cgatacttttttccggacaccttGTATTTATACGAGGAAAAGCAATCATA
TGAAATTGATATTGTTGCTGATTTCCTCTAATTACCTCTTAAACGCTACG
CATTGAATgagcttcattagttttttcctttcttttctttcgTTGCTTTG
TTATGTAGCATTGTCATCataaaattgtttcaaatttgatgttttttaga
tGACAAAAAGACCGGACCGGAAAAGCCGATAGGAAACGATTAAAAGATCT
TTCATCCTGTTTTAAAAAGACATCTTTTTGAGAAGGCATTTTAACAAATT
AACCATAACAAGACTTATTATACAAACATCAACATTGGTGTATTTATGTT
GGAGTGTATAAGTCGATACATCAACAAACTTGCTTGGAGCGTATTAAATA
TCGATCTCATCGCTTGATGGATTAGAACTATCAATTGAATTATTTTGGTG
GTCTTTCTTGATGACGATGACTTGGAAAAGAATCCATTACATACTTCTGT
GTGCTATTTTGACGTATATGTTACTGCTTTTCGTGTTAACAAATCGGACT
ATATCGAACAAATTGAGACAAACAAAAAACGATGATACCTATATTTTCGA
TTTTAACGTTCGTTTATCGAGGGATGGAATCGAGGAAACATCAATCGATA
ATAAAGAAACAAATACTCGATTgaaatttttggcacaaagaaaACCTCGT
AAAGATCTGGTGAAAAGCGAGGAAATTATATTTATCGATAAAAAGGAATT
TGAAGACGGTAGTATAGAACTggatcaaacgaatatcaaacaaagacaaa
aagaagTCATGTTTGAACAAAAAAGAATCAAACTCCCCGAATCCGCATCT
TCAAGGAATGACAATGAGAAAAAGTATTTATTCACCTTCAGGTATTTTGA
GCAGCTATCAATGGCAACAAAGAATTTACTGTCGCTGGCATCATTAGCGA
CCTCGACAGGTCGAACTTTTGTTGAACCTTTCGTGAACAGTTCAAGGTTC
TGCGGGCTTCCATCTGGAACCTCGTTTTCAAGATTAATGgaagaaaaagt
caaatttactgaactgaaaaattattttgatcaagaaaaattgaaagatc
aGTTACAAAAACATGGATATAATGAGATGGTCCCTTATCAAGAATTTCGA
GAACAATGCACCAAAATTGACGTTGTTGTTCATTTTCTATACAACGAttc
gaatattttgaaaaatttacaaaaatggtATAAAATCAATAATGAAACGG
TACAAATAGCACTTGAGAAAGTTAAGCGGACTGGATATTCAGATTGTCCT
TTCGTTGAGCGATCAAGAATCGGTAAATTTCTTGGTAAACCAGTGCAAAG
ATATGTTTGTGTTGATCCAGAGCAAATCCGTTCATCTGAGCAGCTCGAAA
AAGACATTCTACAAAACTCTAAGTGTGCTGCTATCATTTTTTGGAAAGGG
AGCGGCCCCAAGAGGACACATTTCCCATTAGCGCCAAAAATTACAGAGCC
CCTTCAACCGGCTGATATCCAGCATGCTAAAAGACTAGTTGACATTGCTT
ACGACTATATCAGAAACACTATAAAACGACCTTTCATTGCAGTTCATATC
CGTATAGAGCGGCACGTCCGATGGAAAGGAATCCATGCGGCTAGAACTTG
CATCAGGCATCTTAGTGATGCTATTCTAAAACATAAGAAACAAAATAACC
TGAAGAAAGTCTTCATAGCCCATGATCTTGGACCGAATGGCTCAGATACG
CTGAAACGTTTTGTTGACAAAAAGACATTGGTACAACTTgagaataaaat
tgaaatgagcCTACAAGACTCTTACCGCTTTGATCCAATCAAATACGGGC
TATATGACCGTGGCTCGATTGCCATTGTTGAAATGCATATTATGACATTA
GGGGAGTCACTCTTTACCCTAGGTAGGGGAAATTTCCACGACTGGGTCAC
AGAACTTTATTTGAAAAGTAATGCAAATGATGGAAGTTTACTTCATAAAA
TTTGTCAAGATGTTGTATCAGGTGgaagcaagaaataatttttttctatt
tttcagaatttttaatatttatgtaataaattatatttttgtagatataT
TCAAATAATTTGGTTGCAGAATAATTTATTAAGTCATCAATCACGAT
Run BLAST on NCBI

transcript from alignment at sc0001539:31232..34528+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00036931 ID=TCONS_00036931|Name=TCONS_00036931|organism=Clytia hemisphaerica|type=transcript|length=3297bp|location=Sequence derived from alignment at sc0001539:31232..34528+ (Clytia hemisphaerica)
AAATAAAGTTCGTTGTTGAactattgacattttaatccTGACTGCAAGAt
ataataaaatttctttatagTCCAAAACAAAATGACACACTGTTTTAAAG
GCGTTGTATCAGCTTCCTATTGCTTagtattgaattaaaaaaacatacTG
ACAGCGAAGGTCAAGTCGACGTGCAGTGTATTACTCAAGTTTCGATGAGG
ATGAGGCTACAGTGTAACAAGTAGGGAGTCGAATATGTAATCATAGAATA
TAATATAGTTTTATAAATACATCACAGGAAGTTGTATGGATATTGCTTTT
ATAACAATCAAGTAAAATTTGAGTGATGAACTCATCAACTTtaaggtcat
aatttgaaaataGCTCACGAAGTTATCCATCAAGAAAAGGGCGTCGTCCT
ATAAAACAGCAAAAACAGTCGTTTCAGACTTCATTGGTGTTAAGGATTTT
TATGAAACAAAATCAGGGTTTGTTAGATTAGCTTAGTAGTATTAACATTA
ATAGATTTAAATTCTGTGTCTGAGGTTTTTTTCGTCAAACAATAGATTTG
AATAGGTTAATTAACGTACTTATCTTGTTAATGTCTACTTGTTGGCAACA
ACTATAACCGGATTAACCCTATGAGCACGCAACATCTTATGGACATTCAA
TAGACGGCTTTAAGACCTTTGAacgtcctagaaacgtacattagacgtcc
aaaagacgtttgtgTCCATTGGGAAGGAGATCGTTGAGCGGACTTTTGGA
TAGTAAGCCGTATGTAGGGATTTCTATTTTTGCAACCTTAAATTTATGGT
CTGACGGTTTGATATCAGTTTAATtttacagggtgtccggaaaaaaagta
tcgagtcgtaccacttctatagaaagaaagttctatagtgtgtgtttcac
taaatttgtaATGTTTCTCTAAATTTGTAATGTTTCTCtttgtgtcatat
taattgtgATGGGACATCTTTTATGCATAACTTTtacgaaaaacaaataa
ctttaacgtcatgaaaattgtaaagaaagttaattatttctaatcataat
gactgttgtaaaaacaattgttttgtttgttcagtatatattttcttaca
ttttgttaaacacacgcgacaaccttctactcagaatcatgttcgatact
cgatacttttttccggacaccttGTATTTATACGAGGAAAAGCAATCATA
TGAAATTGATATTGTTGCTGATTTCCTCTAATTACCTCTTAAACGCTACG
CATTGAATgagcttcattagttttttcctttcttttctttcgTTGCTTTG
TTATGTAGCATTGTCATCataaaattgtttcaaatttgatgttttttaga
tGACAAAAAGACCGGACCGGAAAAGCCGATAGGAAACGATTAAAAGATCT
TTCATCCTGTTTTAAAAAGACATCTTTTTGAGAAGGCATTTTAACAAATT
AACCATAACAAGACTTATTATACAAACATCAACATTGGTGTATTTATGTT
GGAGTGTATAAGTCGATACATCAACAAACTTGCTTGGAGCGTATTAAATA
TCGATCTCATCGCTTGATGGATTAGAACTATCAATTGAATTATTTTGGTG
GTCTTTCTTGATGACGATGACTTGGAAAAGAATCCATTACATACTTCTGT
GTGCTATTTTGACGTATATGTTACTGCTTTTCGTGTTAACAAATCGGACT
ATATCGAACAAATTGAGACAAACAAAAAACGATGATACCTATATTTTCGA
TTTTAACGTTCGTTTATCGAGGGATGGAATCGAGGAAACATCAATCGATA
ATAAAGAAACAAATACTCGATTgaaatttttggcacaaagaaaACCTCGT
AAAGATCTGGTGAAAAGCGAGGAAATTATATTTATCGATAAAAAGGAATT
TGAAGACGGTAGTATAGAACTggatcaaacgaatatcaaacaaagacaaa
aagaagTCATGTTTGAACAAAAAAGAATCAAACTCCCCGAATCCGCATCT
TCAAGGAATGACAATGAGAAAAAGTATTTATTCACCTTCAGGTATTTTGA
GCAGCTATCAATGGCAACAAAGAATTTACTGTCGCTGGCATCATTAGCGA
CCTCGACAGGTCGAACTTTTGTTGAACCTTTCGTGAACAGTTCAAGGTTC
TGCGGGCTTCCATCTGGAACCTCGTTTTCAAGATTAATGgaagaaaaagt
caaatttactgaactgaaaaattattttgatcaagaaaaattgaaagatc
aGTTACAAAAACATGGATATAATGAGATGGTCCCTTATCAAGAATTTCGA
GAACAATGCACCAAAATTGACGTTGTTGTTCATTTTCTATACAACGAttc
gaatattttgaaaaatttacaaaaatggtATAAAATCAATAATGAAACGG
TACAAATAGCACTTGAGAAAGTTAAGCGGACTGGATATTCAGATTGTCCT
TTCGTTGAGCGATCAAGAATCGGTAAATTTCTTGGTAAACCAGTGCAAAG
ATATGTTTGTGTTGATCCAGAGCAAATCCGTTCATCTGAGCAGCTCGAAA
AAGACATTCTACAAAACTCTAAGTGTGCTGCTATCATTTTTTGGAAAGGG
AGCGGCCCCAAGAGGACACATTTCCCATTAGCGCCAAAAATTACAGAGCC
CCTTCAACCGGCTGATATCCAGCATGCTAAAAGACTAGTTGACATTGCTT
ACGACTATATCAGAAACACTATAAAACGACCTTTCATTGCAGTTCATATC
CGTATAGAGCGGCACGTCCGATGGAAAGGAATCCATGCGGCTAGAACTTG
CATCAGGCATCTTAGTGATGCTATTCTAAAACATAAGAAACAAAATAACC
TGAAGAAAGTCTTCATAGCCCATGATCTTGGACCGAATGGCTCAGATACG
CTGAAACGTTTTGTTGACAAAAAGACATTGGTACAACTTgagaataaaat
tgaaatgagcCTACAAGACTCTTACCGCTTTGATCCAATCAAATACGGGC
TATATGACCGTGGCTCGATTGCCATTGTTGAAATGCATATTATGACATTA
GGGGAGTCACTCTTTACCCTAGGTAGGGGAAATTTCCACGACTGGGTCAC
AGAACTTTATTTGAAAAGTAATGCAAATGATGGAAGTTTACTTCATAAAA
TTTGTCAAGATGTTGTATCAGGTGgaagcaagaaataatttttttctatt
tttcagaatttttaatatttatgtaataaattatatttttgtagatataT
TCAAATAATTTGGTTGCAGAATAATTTATTAAGTCATCAATCACGAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_021817XLOC_021817Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00036931-exon-sc0001539-1491911889:31232..34528TCONS_00036931-exon-sc0001539-1491911889:31232..34528Clytia hemisphaericaexon
TCONS_00036931-exon-sc0001539-1510915933:31232..34528TCONS_00036931-exon-sc0001539-1510915933:31232..34528Clytia hemisphaericaexon
TCONS_00036931-exon-sc0001539-1575043694:31232..34528TCONS_00036931-exon-sc0001539-1575043694:31232..34528Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001539supercontigsc0001539:31232..34528 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.445505	0.281013	0.427039	0.227806	0.0898711	0.178116	0.0832191	0.155347	0.0742996	0.134523	0.0705727	0.230165	0.175324	0.218625	0.24826	0.193585	0.41027	0.426879	0.576072	0.41472	1.51253	2.26406	0.299633	0.360795	0.210097	0.153932	0.313324	0.198227	0.213297	0.302191
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00036931 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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