TCONS_00036927 (transcript) - C. hemisphaerica

Overview
NameTCONS_00036927
Unique NameTCONS_00036927
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length488

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00036927 ID=TCONS_00036927|Name=TCONS_00036927|organism=Clytia hemisphaerica|type=transcript|length=488bp
CAAGTCTCAAAACGGGTTGAAGTACCATCAGAAATCAAAACACCTTTCTG
GCGTACTACAAAAATGTTGTCATTGCGACTTAAGTTTTACAAGTAATCAA
AAACAAATtctccattaaaaaaaagaacattCAATTAATCAAGCATTGCA
ACAACCATTTCGTTTATCCCTGGACTTTGAAAAAGCATGAATCACGTTGT
AAAAGTACACCAGGCAAAGACGTCAGAATATGGCTTTGCAGACACTGCTT
AAAGAGACACAAAACACTTAAGTACAAAGAACATCATGAAAGTAAATGTA
CGGTTAAAAGATATAACTATTTTTAGAATGATTTCACAATATGGTGACCA
ATACATGCCAGACATTGTCAGTTGTCTTAGTTATTCATCcttgcaaattt
ctttttttcttgcatTTATAGAAATAATCAGtttgttattttgatgattT
ATATTACGTTTTATATCCAGTATACTTGTATCTTACCC
Run BLAST on NCBI

transcript from alignment at sc0001536:23617..24104

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00036927 ID=TCONS_00036927|Name=TCONS_00036927|organism=Clytia hemisphaerica|type=transcript|length=488bp|location=Sequence derived from alignment at sc0001536:23617..24104 (Clytia hemisphaerica)
GGGTAAGATACAAGTATACTGGATATAAAACGTAATATAaatcatcaaaa
taacaaaCTGATTATTTCTATAAatgcaagaaaaaaagaaatttgcaagG
ATGAATAACTAAGACAACTGACAATGTCTGGCATGTATTGGTCACCATAT
TGTGAAATCATTCTAAAAATAGTTATATCTTTTAACCGTACATTTACTTT
CATGATGTTCTTTGTACTTAAGTGTTTTGTGTCTCTTTAAGCAGTGTCTG
CAAAGCCATATTCTGACGTCTTTGCCTGGTGTACTTTTACAACGTGATTC
ATGCTTTTTCAAAGTCCAGGGATAAACGAAATGGTTGTTGCAATGCTTGA
TTAATTGaatgttcttttttttaatggagaATTTGTTTTTGATTACTTGT
AAAACTTAAGTCGCAATGACAACATTTTTGTAGTACGCCAGAAAGGTGTT
TTGATTTCTGATGGTACTTCAACCCGTTTTGAGACTTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_021814XLOC_021814Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00036927-exon-sc0001536-1491911889:23617..24104TCONS_00036927-exon-sc0001536-1491911889:23617..24104Clytia hemisphaericaexon
TCONS_00036927-exon-sc0001536-1510915933:23617..24104TCONS_00036927-exon-sc0001536-1510915933:23617..24104Clytia hemisphaericaexon
TCONS_00036927-exon-sc0001536-1575043694:23617..24104TCONS_00036927-exon-sc0001536-1575043694:23617..24104Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001536supercontigsc0001536:23617..24104 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.629568	0.494207	0.156514	0.221182	0.171483	0	0.378342	0.153052	0	0.265459	0.257661	0.322465	0.0845704	0.642571	0	0	0	0.225151	0	0.14145	0.529242	0.243167	0.467132	0.155236	0	0.121847	0.202882	0	0.736237	0.249448
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00036927 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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