TCONS_00036924 (transcript) - C. hemisphaerica

Overview
NameTCONS_00036924
Unique NameTCONS_00036924
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length781

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00036924 ID=TCONS_00036924|Name=TCONS_00036924|organism=Clytia hemisphaerica|type=transcript|length=781bp
ACcgattgtagaaaaaaaaagttatctcGTCAGTATCAAGGGGCTTACTT
TTGATGTTTGTTGTAGCTGAAATTTGTCGAAGTTTTGTAACATAGTGTGG
GGAAGATCATCATTCGATAGTTCGGTTGGCATGTTGTGTCGTTTGGTAGG
GTTGAAGTGAAATTTGAAGTGATTGAGAAGACTTTGGGTTGGGTTTTCTA
CTATTGAGTTTTCACGTTATGATGTGTTTGACCAACTTGCGAAAGTTGTT
GCATTGAAGTCTCTGAGACATATTACTTTATGATTAGTTTCGGTATTAAG
TGACAAGAGTTCTTATTTTGCTGTATCTTTTGAGGATTTCGAGTCTTCCT
CTGTTGGAGTGTAACaacaaataattttcaaatgacaTCCGTAGAGGGTG
ATTTCTGCAACAATAATCCTTGAGTTAACATAAATATCAATCCGAGAGGG
Ttcatagacttccaggctattttctgagccctattggatcattcattgga
cttttggatcctcagatcctaaggtcctaatcttaagtctagcgttaaaa
ttcagagttaaaactctacccttccaacctaagttacAGCTTTTCCAAAT
CGATTGTTGCTATaagatttttccttttttctcaaatattacgaccatga
ttgtagataagAGTGACCTTGAAACAACTGGTTCGTATAGTAATAGAGAA
AGTGGTGAaattagaaacactcttaagaaactacgaagaaagcgatttga
taaaagtgatctttgaaacactcgtaaaagt
Run BLAST on NCBI

transcript from alignment at sc0001535:16769..17549

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00036924 ID=TCONS_00036924|Name=TCONS_00036924|organism=Clytia hemisphaerica|type=transcript|length=781bp|location=Sequence derived from alignment at sc0001535:16769..17549 (Clytia hemisphaerica)
acttttacgagtgtttcaaagatcacttttatcaaatcgctttcttcgta
gtttcttaagagtgtttctaattTCACCACTTTCTCTATTACTATACGAA
CCAGTTGTTTCAAGGTCACTcttatctacaatcatggtcgtaatatttga
gaaaaaaggaaaaatcttATAGCAACAATCGATTTGGAAAAGCTgtaact
taggttggaagggtagagttttaactctgaattttaacgctagacttaag
attaggaccttaggatctgaggatccaaaagtccaatgaatgatccaata
gggctcagaaaatagcctggaagtctatgaACCCTCTCGGATTGATATTT
ATGTTAACTCAAGGATTATTGTTGCAGAAATCACCCTCTACGGAtgtcat
ttgaaaattatttgttGTTACACTCCAACAGAGGAAGACTCGAAATCCTC
AAAAGATACAGCAAAATAAGAACTCTTGTCACTTAATACCGAAACTAATC
ATAAAGTAATATGTCTCAGAGACTTCAATGCAACAACTTTCGCAAGTTGG
TCAAACACATCATAACGTGAAAACTCAATAGTAGAAAACCCAACCCAAAG
TCTTCTCAATCACTTCAAATTTCACTTCAACCCTACCAAACGACACAACA
TGCCAACCGAACTATCGAATGATGATCTTCCCCACACTATGTTACAAAAC
TTCGACAAATTTCAGCTACAACAAACATCAAAAGTAAGCCCCTTGATACT
GACgagataactttttttttctacaatcgGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_021811XLOC_021811Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00036924-exon-sc0001535-1491911889:16769..17549TCONS_00036924-exon-sc0001535-1491911889:16769..17549Clytia hemisphaericaexon
TCONS_00036924-exon-sc0001535-1510915933:16769..17549TCONS_00036924-exon-sc0001535-1510915933:16769..17549Clytia hemisphaericaexon
TCONS_00036924-exon-sc0001535-1575043694:16769..17549TCONS_00036924-exon-sc0001535-1575043694:16769..17549Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001535supercontigsc0001535:16769..17549 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.497065	0.725798	1.05684	0.758506	0.669143	0.528766	0.318967	0.970491	0.264152	0.324688	0.502709	0.206538	0.289651	0.514065	0.0706957	0	0.0467743	0.144415	0.200781	0.13982	0.120199	0.61426	0	0	0.466147	0.356593	0.772275	0.0917612	0.275367	0.28153
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00036924 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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