TCONS_00036916 (transcript) - C. hemisphaerica

Overview
NameTCONS_00036916
Unique NameTCONS_00036916
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3296

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00036916 ID=TCONS_00036916|Name=TCONS_00036916|organism=Clytia hemisphaerica|type=transcript|length=3296bp
gaaaaaatcgaaaaagtcaACCAAGAGGAGTTATATTATTCTGCACTGGA
GAATATTGTCACAGTTTGTATTCAAAGAAGATTTGATTCCTTCCAATCAT
CAATTGTTTGTACCTTGGTGGTGTAACAAAATATCTCAACAAGATCTTCA
GCCTTGAAGCTTGTTTGATGATACATTATGTCGTTAATTGGAGAAGATTG
CCATTATTTCATCACATCAACATGTACACGAGGAAACCAATGTTGCTTTC
GTCACCAACCTGCTGCTAAAACCACTGAACAATCATGTCCAGAATGGATA
CAAGGAAAATGTCTGAATCCAAACTGTAATCTCCGCCACATCGCTGTTGA
TCGCACAGGTCACCGAAATAAATTGACTCCTAAAGTATGTTTTTACGACA
GCCAACCTACAGGATGTTTGAATCCACTTTGTAAATTCGTACATACGAAA
AAGAAAGCTGTTGAACCAGTTGTTATTCCAAACGCAACACCTCTGGCAAA
ACCTGTTTTGGAAAATCCTGTTGCACCTGTTAATCCTACTCCAGTTGTTG
CTAAACCAGTCCAACCTACCCTTGCTGCTCCTACTATTGTCAAACAACCT
GTTTCCCAAGTTGTACCAAAACTTATTCCACCGCCAGCACCACTTCATAC
ACTACAGCCTGCTATTCGAACTCCAACTCTCATTAATGGAGTATTGAACA
TGGTCCCTGCAAGAGGCATCTTGGGAGCTAACCCCAATCAGGCACCTCAA
ATTCTCCCACCACTTGCTACACATCACGGATTGAGGCAACAAATTGCTGG
TCAACCTTTAGTCAATAGACAACCTGTAATTGTCGGACAACCCGACAACA
ATAATGGTTTACCAAAGACTGgaCATTTCAACGAGCAAGTTCGACTTTTC
AAAGAGATGTTGAGCTCAAAAcagaaacaaaatcaaaatgATATCAAGCC
AAATGCAAAGAACAACAGAGACTATCACGGTGATAGCAGCGATTATGATT
ACGATTTagagaaagaagaaagagaaaGAGATCGAGAGCGAAGAAACAAA
GATAAATATCGAAAAAAGAACAAGAAAGAACGACATGGTCGCCACAAGAA
GAGATCAAAAGATGACCTTAGTAAAGCAGACCAAGAAGTTTTATATGGTG
ATTACAAAGATGTCCCTCTTGATCGAAGGCATAAGAAGGGTAGTAGAGAG
TCTCGTCATGCAAGCAGCGATTCTGATGTCAAAGttaaaagttatgaaga
aatcTTACGCGAAAAAGCTCTTCGTAAAATGatagagaaaaagaagaaag
agaaaaactttgaagatgATTTCCAAGATATCCTTGAAGCAGAGGACTCT
AAGAGTTCAAACAAAAAATCGAGTAGTGATGGTGAAGTCGTCAGTAAAGG
CTCACGCAACCAGGATGTTGATTTAGAAAGTGTTGTCTTTGATAAAGAGG
ACGCACTAGAGGTTGGTGTTGACGAGGATGAGTTCGATGCCGAAGTTGAT
GACAAACGTCACTCAAAAAGTAGACGGTCAAAAACAAGGAAGCGAAGCAG
CGAAAAGGAAAATATAGAAGATTCCTCTCTCAAATCATCAGCACCCTCTC
CAACTTCTCAAGAAGTGAAAACCAATATGAAAAGAGAAAGTGGAGATGAG
GAACTAGACTACAATGATGATTTACCTGCTACTGAGGACGGTGTGCTTGT
CATTCCTGATGAGACAACTGATTTAACATTCTCTGTTGATGTTACTGACG
ATTTAGCGCAAGAACTAAACTCTGAACCTGAGGAACGGTCTAAACACAAA
aagaaaccaatcaaaatagtgaaaaaaatACCGAGTGTTGCTAGCCGGAT
ATCAAAACATACCAGTAATGATACAACGCGAGACCGTCGTCAGGAACGTT
CGAAAAATAAAAGGACTATACAAGTTGTCGATGATGAATCTCCGGAtcat
aaaaaagagaaaagcgAACCTGGAAAAAAGACAGAAACCAAGAAAGTTAT
ATCATTAGTAGGGAAAAAAGGTACAGGCAAAAATGATAGTGCTTCTACTG
AGGAAAAAGATGCACCTGAGGTAGTGGAGgtagtaaaaataaaaacattt
gaagAAATCATGGCTGAAAAACGTAAACGTAAACTTCAAAAAGCTGACGT
GGTTGTTGTTTCTGATAGTGATTCTTTAGAGTCACCTGATAAGAAGCCCT
TTAGTGACTCACCGTCCAAAATGAAAGGACTTCCATCTATCGCCACTGTC
TCCCAACCAGCACCACCTCCGAAAACAGCTGCACAATTGCGCCGTGAAAA
GCTTCAGTTGGCTAAACAAGAATACGAAAAGAGGAGGAAATCTCAACAGT
TGTATCAAGTCAAAAGCAGCCAAGCGGCTACAACGAAACCACTTGATGTG
AGAACGGCAAGTCCCGTTAAAACACCAATTACTGCTCCTACATCAACAGA
GACCAATGCTGCCAAGACCATCAAGTTAACACGACCAACAGTCACAGCAC
CCACCAAAGTTGCTAACGCTCCTACCACTGAGAACGCAAGCGGGGTCTCT
GTTCGCTCTTTTGAAGAAATcatgaaagaaaaaagtctaCGTAAACAACG
TGAAATGCAGGGACAACAAAACAAGGTCGAAGCTAAACCTATACAGAGTT
TCCTACGACGTCGTTCTCTATCCAATCAACGCAATCAAACACAACCTGGA
ATCACCACTTCAGTTAGTAACGACAGTACCAAAAGCACTGAGAAAACTGT
TCCAGCTACGACAGCCGTGATTGCAGAAACCGAAACAGCAAAAGAAACTA
CGACAATGGTTCTACCGCCGGTTGCGAAAATTATCGGTCGACGACGAAGC
TCCTCACCACTTCAACCAGGAGTCGAGGTCACTAAAGTTGCCCCCATCAA
AATCAAACGAAAACTCTCCTCATCGTCCAGCTCGGACCTGGCGAAATCAA
GAACACAAACGCCTCCACCACAAGTTGTTCCTACAATACCCGCAAAATCT
GACGACGTTTTCGATACACTGAAAGACGTCAGGGCAAACAACGAATCATC
GACGAACGGAGCATCTCCGATTGCGGAAGAGACAGAACCACTTTCACAAG
CTTCAATGGAAGACATACAGGAAGCACTGTAAGTAAAACTTCTGTATAGT
CCAGGGAAAGTGTGCATCAATTGTGCGTTTTTgactagaaagcatgaaat
ttggtacagtggtacctcagggggtaagaaacattttaagcctctgGCCC
ACTTCCGGAACAcctttttgtgtattttacagaccagaatgctTCC
Run BLAST on NCBI

transcript from alignment at sc0001535:27817..44273+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00036916 ID=TCONS_00036916|Name=TCONS_00036916|organism=Clytia hemisphaerica|type=transcript|length=16457bp|location=Sequence derived from alignment at sc0001535:27817..44273+ (Clytia hemisphaerica)
gaaaaaatcgaaaaagtcaACCAAGAGGAGTTATATTATTCTGCACTGGA GGTactattttcttataaagctAACAAAAATGTTTGAATATAGACAGTTT ACACCAGAAACATTCACTAGCTTTTCGTTTAGTTATTTTATACTATCTTA TATACTACAATAAAAAACAGTTTCCAGTTTTGAGCTATTAATCCATTATA TGTATAATTCAGTAGCTTATGCAGTTACTATGTAATACTAAGACACTTAC TTATGGTTGTGTTCtagttacaatttttttcaaaagcagttacTACAGAA AAATCACCCACGTTATATGGTCTGAACTTTTTCAGGTGCCAATTAGTGAT TTTGAACTTGGAAAAGTATGGGGTACCGTTTGGGCCATACCTTGGGGTGG TGTATACAAAATTTTAACTGAAAAGGAGTTTATTATACTTTCAATAACAT CAATAATCTGTGAATGacaaagtgctctataccaagGTAGAGCTTAATta atttaaaatgtatatatatttcttcaaaaaatcaaaacaacattacaGCT TGTTTCACGGTTTATACTTTCGATATTTTTAAGTGAGAAAGAGTGTCAGC TTGGGAAATACCATGTGTTTCCATTTCGCGAGTAATCAATCAGTCAGgaa caagtgcaaattaggatacctgTCGGCAATCTCTCCTACTTTTAGGAGAG TTTGTACCCTAATTTGGAGATTTAGGAATCCTAAATAGGAGAGCAGACAC TTTGACCTGAACTTTTGAGGTTACTGCTTTGATCCGCGTTTGGAAAACTA TGCAAACCTTTTCTTCATCAAGATTTGCACcactgaccaaaatttcaagt aatttctcTGGCGGGTTCCTTGAAAATTAACATTAAATAATCTGCCGTTC AGAGCTTAAAATTTTGCGAACACGAGCtaaagatttatttttcattttac ggAACAGCCCGCTACAGTctgaatttcaaaatggtagccgtaTAGAAGGA AGGGGCATGGTTTGATTTTCGCGCAAAAAAAGCTTTCGTGTATGCTAGTT AGCACATTTTGAGTGGTTTTGGGCTATAGGTTTGCATTCCGGACGGCCAA ACTCGATGAAATTCAGTACACAATCTCATTTGCTTATTATTTACATCTTG GAAGTGGTAAAATTGCGCAGATGTCTCTGGTTGgtgaaaaatacaatttt ttttggattttagtatcctaattaggatgttgaatgctattttggatact tttttgtatatccaatttaagatactctcctaagtaggagagattgccga aggtatcctaatttgcacttgttcttgactGTCAATGTCAATGACGCAAa caatcaacaaaagaaatacataaaagatcaaagagaaaagCTGAAAGTAC AGTatgaaaaaatgattgttttCCAATTTTGGGAATCTGCTAAACTCAAA ATTAAGTTAGCAGGTTTCATGAAAAATGATTTGGGTTACCTGAACCTTGA AGGACCCTATGTTAAGACTCCCCGGTTTGGCAAacatgaagaaatagaag aaaaactaaaaattcaccCCCTGGAAGAATTtacatagctgtcaacttcg cctCTCAAAAATGCAAGAGAGCTTCAAGTCggaaaaatttcaggaaatcg AAGGAATTTCCCTGCGAAGTCCAATTTCATCGGAAATTCTTTTTCAGGAA ATCAGGAAGGTAATGATGATGTAAAGAAGTATCCAATCAAATGAAGGTGA AGGGCTTTCATCCAATCAAAAAAGGATTCTAAGAAAAATAACACTAGCAT TACGACCCTGCCGGTTCACCAGACATTCCGGTGTTGTTTGTccggtttca aaaaaattggaaaatcaaCGGACACAAGTCCAGTGTAGTGTCCGGTGTGT TTTATTTGcaagtgaaaaaattgcacCGGACATTTTTGCCGCAGCATTTT CCGATGTCCGGTGTAGCGGGCAAGGGCGTTTTCTTAATGTTCCTCAGTCC CGCCCAATATACTACATCGTGCGCACGCCCATACAAATTCTCCTTTTGCC GTTTTGTCTAGGCTGCATGCATGCCCTTTGCTTCTGATATGATTTCGGAT GCGCATCGTGCGTCTACAATATTTCtgtccattgagtttcaagcccgaag ggctagaggcaaaTCTTCAACCATTCTCAggcaaaagaaattgaaaccac ttatttcccttTCCAAAACGTGCCGTAATCACGACGacagattgtatcta gcggttcctatgttttggaggactacaatttttgaaatctagtgatagat tttagtttcaatcggGGAGTTGTGTAAAGATTACGCACTGGCCTTACTAA ATGTTATATAtcgtctgaattaggatcctaaccttagaatgatgtaagaa tattttaggatgattttccctaaAACTTTAAGAATGTCCAAAATGAAAGG GagcattcaaaaagtacatacgtccaaatttccctattttcagACCCCTC CCTCCCCCTTGTTCGTCAGCGTTCGTTTTAAAGTACCCTTCCCATTTGTA CGttcgttttttttctcaaaatttttaccCCCTTCCATTTAGACAATgta aattcaaagaaaattatcTACAGTAAAGTTACATAATAATCGCTGAACAA TTAAAACATACACAATTATTTAGGGAATTAACCATTGTGTTTTAGTTTTA TTAATGGAAAGAAAAAGAGTGATTGTGAGAATAGATTTTCACAGAGGAGT TAAAAAAAGTCACGTTGTGTTacaagtacccccccccctgaaaagcGAAC gtaccttaaggggattaattttcgtgaAGACTAACTTTCGcaaggcaatt ttttttcaaaaaattatttaattttcgcgggacttattttcACAAGGACG GGAATCGTAAATTTTTGCAAAGATTAACAAAGGGAAATCATGTCTAAAAA ACCCTTAGAATTAAGTATatttaaaaacttaattttcgcgagaattATAT TTCGCAAATTTCACAAATCCAAAGGTTcttaaaataaatataatcctcgc aaaaattaatccccttGAGGTACATGGATTGACTTGACCCCCTCCCCTCG TTcgtttttgttcacttttttaCCATTTGTCAAACTTGGTTCtcgccaaa aaaagttcccttaaggtatttccTATACCAATCAGAACAGAGAAAACCCG AGGGTGTCATGAGATAAAAGAGACGTTCATAAGACATTTAATGtttttaa caagaaaaaaagaaaaaaatcgcattcaaaacaaatttttcattaaaatt atcAATATGCAAAATTCTCTCAGAATATGTACCTCGATATGTACAGTAAA TCAAGCAATATCAACCAGTAAAATATAACAAATGTTTATTTATAAAATGC GCAAAGATTTAATCTTCTTTGCAAGTTTTTTCGTGTTTCTTTAATCGTGA CTTGTTTGACAATaactttttgcaggttttgCACTGATGGTTCGATGTTT TTTGGTGTACTTGCTGCAAATGAACATTGACtcgggaatttgatgcaaag CCTTTTCACACAGGGTGCATCAGAAGGGAAGTTCTATGTTTGCCTTGTGA TTTGTTGCACCTTGTTGCATTGTGAACAAGTTAGATcctgtgttttcttt ttttttatactttttcttttttcttcgacaaaatttttctttcttgtttt tttttcgaggGCTCGTAATCGCTATCCACCTCTATGATTTcgactctttt tctttttgttgctGACTTAAAATATGTAAATGCCATGTGACTGActcttg tttttaaattgatatGTTTACACTACTAcacatttcaaaaacttttatgg CTTCTTGTTAATAATGTAGAGTATGGGCAGGTATGGGCCCAGACTGATTC GGGGTCATTATCTGTCCCGCCTGCTGGGGAAccaaattttccaagaaatt cTCCCCAGTTCTTCTAAAAACACAAAACTTAAAGAGCACAGGACAATTCG ATTGGGAAATCCCTCAAAAATCGcacactttttcaaaaaaaaaagcaatC AAAAATTACGTTAGAATTGgcagaaaatcaaaaaagtctTGTAGTTGTTC ATCTTTTCGGGAGTGGTTTACCCTTCGGTGCTTTTTTTCAGGAACTTGGG CACGCTAAGGGAGAATTACCaaccaaagaaaattgaaaaagcatGAAACG TGCATGTTAAAAATTGAGCAATATTTTTGCACACAGCACTGATTTAGCTG ggaataataaaaacaaaaaaataaaaacaacattcgTTTTGTTCATACAG GTTCATAATAAAACTgtacaaaaaaacgaaaatattaaaaatatctcTGT GTAAAATGGAAATAAACACCACATTTTCACGGGTAAAGAACTTAAGTTTT ACCGAGTCAAGCTTCATTAGCTTCTTTAGAAGTTCATTTCTTTTCTTCAC ATCAGAAAACTCGAAAAAGTAGACGAATCTCAACTTTGTACCTAGTCCGA ATGTGCACAAAGGTTTATGATTAAAGCCTCCGATAAATTATGCAGTCATG TGTGAAATTTTGGCATTGTCGATAGATGGGGAAACGAGTTCACAAGATTT TCTTGCCATCGTTCCAATAGCTTTTCTTTCATTATCTTCTGTCAGTCCGA AAATGCGGATAGCATTGTTGTCATGTCTGTTATGCGGCTCTCTTACGCAA CGCACTGGTATTCCTTCTAACGGCTTATTTTTAAGAGCATGGTAGCCATT TGCCGTCGCATAGAAACCGAAGTAATGTTGACGGTTCCATTTCATTTGCT TTCGGTATAAATTGTAATCTACAAAATGTTGTAGTTCTTTTTTGGCAATC TCTGATTCCAAGCACCCAATTTTATCGTATTCCATATTTTCACCTAAATC ACTGTCTTTGaactgattttgttgcagaaGATCTTGCAATTATTTTCATG ATGTCATCAAGCGTCTGACATTTCGAACTTAATACATCATTCGAATAACT CCTTTTCATATCATATCAACTCGTAATGTGAATTGCCCCCAATATCTTGa gatatatttattttcaattacacgctttttttataagaatatctatgatg aaaatgaacaaaaaattaaaaatacggctaagaatatcaaaatcatggaa tttggctactcaagataagaatgctatttttagagcattttcaataatAA ACTGTCAATTAACCCCAGAGGAAGGCTcgctcctttcacaaaaatgctcT TTTTATGCTTGAGATGTAACCACTCCTACTTACTATACATTTTCAGCCGC CTGTCTTGCGAcacattgaaaataaaaaacgaacTTGTGTTTTTGCTTAA CTAAATTAAATAAATGTACAAAATTTCTAATATAAGATCTCAGGAACATA TATGACAAGTCGAACCGTCAATTTCGTCATCTTTAATGGCAACACAACAT TTATGGAAAATACGGACCTCGCAAAGTGGATTCTGACACTTAACTATTGA GTCCAAATTTACTTTTTGATCACAAAAATATATCGAAATGGTATCATTTA CGGAAATCATCAATACACTCGTCACAAATCCACTCACCAGTTGGAACAGA TTTAACTTTAGCACATGTGATGTGATACCATCTGATTGCACACAATTCTT CTCTGCTGCATTCAACTAAGACTTCGACCGATTCTGAAACAACAAATTAG ATACCGTACAGATTCGATTAGGCGCCCTGGGCGCtaattaaatttttgat tttttttacctgGTCGCTAATTATTGGAAGCGGGTGCTTAATAGCTGCTG GgtgttaaataattttttaacacacaaagcaaataaaaaaaagtgatgAC GATTTTATACTGTTTTTTTCAAATACAAAGACAGAAATTTCCTGTTTATA CATCATAGAttactttattaaaaaaaattgaaacaatgtTTGTACCATGT TATActgatgttctttatttttagaatgAAATGGGAATATTCTCGAATAG GCCCAGTTTCTTGGGACCGATTCCGATTAAGTGCCAAAACTTTACGGGCc tatatatttaaaaatcagttTGACAGATGCCAAAAGATATCTATATTGAT AGGAacatattttggccaatttattctgccaaattaagttctcgccaaat ttagtttattTAAGGTAATAGCTTTTTCTCCCGCAGATACAGCAATGATC TCTGGTCGGTggacttttgaaaagaaatttaataagTTTTCTCAGAGGTA TATAGGCTTATTCATAAATTCTAAAAGAAATATGACTGGTGTAGTTATCA AAAATGCGATTGATATTCACTTGCCTCTATATAAATTACACTCTATgcta ttgaatgacaaattattTCACATAAAAATTATCTGCCCTCAGCCAGTAAA AAAGTGATAAATGATCTTGTCTCTAGGAAATTTCCGTGGAGTAATTAACG TTGCGTTCCCCAAAGCGACTATTGACTACCCACATCAGTCTGAATCCGGG TGAAAATTTATCTTGTCgtcacccggccgcatttttttcgtacatcatcg ttagggttagggttagtttgtttgtttgaaaaactttcgtgaatcagttt ttgaggcgtgtgatttatcgcacgtgatattatatattctactgtaaaat gcacgcctggaaatcacttggaatgaaggttttatcctgatcattgttat agaaatgaaattttattcatctcaaactaaaccctgcattgtttttgtta attctNaatgaaattttattcatctcaaactaaatcctgcattgtttttg ttaattcttacttgcaactcaacttttaagaatgttttttttttatatac aacttggtttttataaaagaatcatgctgatttgtgagtaaaataaatag aaacattcacaaAGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNTTCACTTCGTAATCACAGTTTGGAGCCTT TAGcaattgaagataaatattcaaaatgaaagagagtgtccagttcttgg agatattgtaacacaattgaaaatataaaaacgatgaaaattaagtattt gaataatcgcacgcctagaccactataaatcaaaatctaggcgtgcgatg atcacacgtgaatttttcttatgccgaaGCCTGTAGCGGTGTCGAGTTAC TACAGATTTAAGGTAAAGAAGACCATCATTTTAACTTCtacgagtgcttt aaaaaatcgagttttgggATCGAAATTTAGNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNcgaaatttagcaaaaaaaaattttttgcggccgg ccgggtgagtgtttttttcgtcacccggtggaccggaaacaaaaatattt ttagggttcgcCTTATATACATATAAGAAAAGGGCAATGGATTTGGGTTG ATCATCATAATGATTAGCCAACATGCATATCCTTatatcctgaaaaaaaa attggaaaaagacaTTACATCAGGgataaaaaggagaaaatggaaatttt tcttACCTTGTCCAGGTATCATTGTATTTGCCTGTATTTCTCTGCAACAG TAAAACCAATATAATAAATAACATCATTCACCAGCAGAATATATATAATT GCATTTTTATATTGATGTTTGAATTCACAAAACACTTCACaacatatatt tttatattgatGTTTGAATTCACAAACATTTCGCAACATGCAAATGCCCA GAAgtggtaattttgaaaaactaagcTTTGGAAAACACGAAGTTTCACCT TTCTCGCCAGAGTTCCTTGGTTGTAATTACTTAGCTAAAATATCCAGTTT TTCGAGACTTTAGAAAACAGTGCTCTTGACCACGCATTAGCGATATTCAT TTTAAGAAAAGGCCGTGTGGGCCGCGCAGTACCATGAAACTCCCGCTAGA AAAATGCGCACCAGACAGTCCTGTGTAGTCCGGTGCGCACttttgaaaat tactcaaaaaattACCGGACACAGGAAAAACAACACCGGAATGTCCGGTg aatcggcagggtcgtctGGCATTATCCTGCTTTCGTTGGACTTAAATTAA GTTTGATTGAATTATAAAGTTATACTTTGTCACGGGTGTCAAAAGAATAT GAGAGCTTATttatatcaaaaacaaaacaacagtaTTTCCCAAGCTGATT TTTGGTCTCTTACTACTTACTTCCACTTACTACTGATGATGTCTCGTTTT AACTGCATGACTCACCTCACAGCGCCctgtttaaagggacataatagtag tgacgaaatttgtaaacaaaccgtatgcagtgggatacaaatgtcacatg tcaaaataaaaattaaaaacaaatatggctgattttgattgtttcaattg ttttacaagtttctTTTGGACacatgattttaattgttctctttaatgac gcgtggtttgcgcaatgtttacattttactacttttatgtccatTTAATG GCCAGTAAGCAGTTATGCAAAAAAAGTTAGAATTTCTAAGATGAtacttt tgaaataaaaatgtaatGCCTTATTGTGGTATGTTTCAACTTCTTgtgaa ttattattattataattatgGTTGATAAATTTAGCTAAGAGCCCCAAGAA GATTCAACTTCCAACTTTTCCATCAGTAAACAGAAATCTAtccatttgag atttttcactTGTATTTAAAACTGTATCTTAAACTTTTTATACGATTTGT ATTGGTCATCCCAATTAGCAAAGTGAAATTCTAATAAAATAATGACTGAT GAATTGTatgattttttaatatttaaagcctactttgaattttttttatt gtatgaATTTTTATTGTTATGGTGGAAATATggcaaattaaaaaatttgt aataaaatctgAATGAAATAACTTTTAGGGGCATTATTTATTACATTTTC CAACATTTTGATACTTATTTTTCCATAATTGTGAAAGATGTTGAACAGTT TTTCTATCAAGATTTAAAAAGGTATTGCTCGTTGCAAGTAAGTAAAAATA GCTTAAACAAATTCTCTCTTAAACATTTTCTCCCatgtattatatttttt atgtgtaaataatgttttaaaatatatttttctgaattaTTACCATGGGA TACAATAAATAGTACACATATACAAAAACAGAATTatctttatcaaaaag tttataaGAGTTTAGCAAACTAATTTtcttatttgttattttttggtgtg taaactttttaaattataATCCAAAAACATGTCCGATATTGTTATggcaa tcaaaattttaaaaagcaattaTTTATAACGTACTACtggatttttattt tactgTACACTTCTTATTTATCACATTATACTCatattaaatgaaaaaaa tatatacaaaatttatattttgaaatcagATCTTATTGatgagaaaatct ttgatttctaaatacaattttgcatattttacatttttaaagtATTAGTT TTATTATAGTGGAAGTTAAAAGTTGCTTATTGAAAAGTCATTTTGAAAGT TAGAAGCAGTTATATAGTGTAAATAatccttttattttgattttactttg taCTTGTGAGTTTGTTTTTACTAATATTTTGGTTATATGAAATGCATGTT CATCATGCTTCAATCCAAGGGTTTTTGTACAGCTTGTTGATGGGTCTCTC AAGGTATGGTCTTAGATTTGATTGAGTGATGTCATCCATCTTCAAGTGAC CCTAAACAACAACCATGATGGTATAGATGTTCATCTATTGATCGATCGGT TTCATCCCCTATCCATGGTTTAACCTTCTCCTAATCACCTCTGTCTTTCC GAACTGTAGAATATTGTCACAGTTTGTATTCAAAGAAGATTTGATTCCTT CCAATCATCAATTGTTTGTACCTTGGTGGTGTAACAAAATATCTCAACAA GATCTTCAGCCTTGAAGCTTGTTTGATGATACATTATGTCGTTAATTGGA GAAGATTGCCATTATTTCATCACATCAACATGTACACGAGTAAGCTAATT TTATAATTCAAGCATTataatactttaggcgtacaaactttcgcgagcag aaactttcgcaactTTTGCAAACCTTTATTATATCTGTAAGATTTGGCCA ACAACATATTTAAATGACATGATACATGCTTTGTGTCACCAAAAAATAAT CAGAAACTTGATGAGCTAATAATGATATTTATTTATCACTTTCCCAACTT TAGGGAAACCAATGTTGCTTTCGTCACCAACCTGCTGCTAAAACCACTGA ACAATCATGTCCAGAATGGATACAAGGAAAATGTCTGAATCCAAACTGTA ATCTCCGCCACATCGCTGTTGATCGCACAGGTCACCGAAATAAATTGACT CCTAAAGTATGTTTTTACGACAGCCAACCTACAGGATGTTTGAATCCACT TTGTAAATTCGTACATACGAAAAAGAAAGCTGTTGAACCAGTTGTTATTC CAAACGCAACACCTCTGGCAAAACCTGTTTTGGAAAATCCTGTTGCACCT GTTAATCCTACTCCAGTTGTTGCTAAACCAGTCCAACCTACCCTTGCTGC TCCTACTATTGTCAAACAACCTGTTTCCCAAGTTGTACCAAAACTTATTC CACCGCCAGCACCACTTCATACACTACAGCCTGCTATTCGAACTCCAACT CTCATTAATGGAGTATTGAACATGGTCCCTGCAAGAGGCATCTTGGGAGC TAACCCCAATCAGGTATTTTTTCAAGATTCATGTTTTTTTTCCCACTAAA AGGTAATAAAGTGAATAAAAGATATATGTATTATCCCTTTTAAAAAAGGG ATAACAAAGATTCATTTACTTTAGGTTGCTACTTGCAATTATCTGAAGTT TGTGTAGGGACTACAAAATTCTAGTGATTTTTGTGAGATCTGTCTCTTCA AAATGTTTGTGTAATTGAAATCCATAAGTGGATTGATTGAAAGACTTTca cccattcttgctcccgaaAACCCTCTTTGTATATTTTCTAGCTTTTTGTC ATATTCTTATCGTggttaaaactgatttttgcgtgTACCCTACGAAATGC ATGTGATTTTTTGTGGAGAAATCTTTCAAGTAGACCCAGGTAGACCTGCA TTGTCAAAAGCAATGACTAGGACTTAATTTTGGGTGATAAAGCTGATTTG ATTTTGAACATTTctcaaatatttatttattttcttatttatgaCATATT GCTTTTATTCAGGCACCTCAAATTCTCCCACCACTTGCTACACATCACGG ATTGAGGCAACAAATTGCTGGTCAACCTTTAGTCAATAGACAACCTGTAA TTGTCGGTGAGTTGCTGTTATTGTCTCTGAATGATCaaacataatttcaa aatcCTTAATGAATCTAGATTTGTTGGCTTTTAGGTACCTTTTCCCATTA GTTTTTGCATACAATCATGTTGTACCTTTCACTTCCATGCACCCTTTAAT TTTTGTACACCCTCTATATGATATAAAAACTTGCCCTATAGGGCCAAATT ATTTTCTCCAAGTGCAAAATACATTTCTCCCATTTTTTAGGACAACCCGA CAACAATAATGGTTTACCAAAGACTGGTGagagttttcttgatttttttt ctttttaaacgtccaaacaagaaatgatacaactttagaaacattcagta atataactttttttttttaaccaaGACTAACACCAATACTAACACCGTAA CGGTTGTCCAAACAAGAAATGATACAACCATTGGTAATGgtaacaaaaca atttttttttttattattctgatttgatttaattttttttttgcaggaCA TTTCAACGAGCAAGTTCGACTTTTCAAAGAGATGTTGAGCTCAAAAcaga aacaaaatcaaaatggtaTGCTTTCTTTAAAATCATAGAAAATCTTTAAA CTAATTCCTTCCATACACAATTTTGCTGAAAAGCCTAATAGTATAATTTT TAGCCTTATTTATGAAATCCAATTTCTTATCATAGATATCAAGCCAAATG CAAAGAACAACAGAGACTGTAAGAAATGAATCTTATTTTTAATTCACTTT CCTTGTTTTATTGGTCTCAAAATTAAGCTTCTGGAATTGATTAATCAGTA AATAGTACATTGTTACCTTAAGGGGGacaaatttttgcttttcacgcagt tttttggcaaaacggcaaaaattacaaatttggccatttttcatcaaaaa aattttaaaaatccctaggtaaatgaaagaaaatgtaTGCAAAATAGGGC AAAagagcgaaaattagttcctgcaaaataaaatttttcgtttttttttc aaccgcAAAAATTATGtcccgctaaaattagttccatTAAGGTATTCAAC ATAGACGTAAAATCTTTAACTCTTTTTACTTGTTCATTTGTTGGGAAGTG GGTCTAGCAGGTTTTATATGATAATGATAATATCTTTCTTTAATGTTGGG GTAACGTAATTACAAATCAAGTAAATTTATTATAACTAATAAAATCCAAC AATTTAGTaatttttatgttgaaaatgcaataaattagcaaatttttcaa tctttttttacaGATCACGGTGATAGCAGCGATTATGATTACGATTTaga gaaagaagaaagagaaaGAGATCGAGAGCGAAGAAACAAAGATAAATATC GAAAAAAGAACAAGAAAGAACGACGTATGTTGAATTTTTATTCTCAGACT TTTATAGTTTACATTTACTAAGAGTTTGATGCTCGTCCAAGTAATATAGA ACAGTATAGAATAGTGTAATTTGGTCCTTTAAAAAGTACCATAATGTGTA GAATCTGGATATTCCAACATATAGCCCCCAAAATAATTTGTAACTCGACA ACTGTTTGCTgaatttattgttatttttttgtacTTAGATGGTCGCCACA AGAAGAGATCAAAAGATGACCTTAGTAAAGCAGACCAAGGTAAAATCCAG TGCAAATCACAGAAGGTTTTTCCCATAAGactaagaaatattttgtgctT TGTAAATTCTTTTGTAATGACAATTTTGTAATGGACAAATGGTGAAGGCA AACACTTCacagaaaaactaaatttttacaaaaacaccgtttttgcattt ttcaaattagTGTTAGGAAAATATCTAGTCAACTCAATCTCATGCAAATT ATTGGAACTACCTCGGGCTAGACCCCTTCTAATTTGTAATTGGGGTTGCA ATGGAGGGTGATTGATCTTGTTTCATTTTGTCTTTAGAAGTTTTATATGG TGATTACAAAGATGTCCCTCTTGATCGAAGGCATAAGAAGGGTAGTAGAG AGTCTCGTCATGCAAGCAGCGATTCTGATGTCAAAGttaaaagttatgaa gaaatcTTACGCGAAAAAGCTCTTCGTAAAATGatagagaaaaagaagaa agagaaaaactttgaagatgATTTCCAAGATATCCTTGAAGCAGAGGACT CTAAGAGTTCAAACAAAAAATCGAGTAGTGATGGTGAAGTCGTCAGTAAA GGCTCACGCAACCAGGATGTTGATTTAGAAAGTGTTGTCTTTGATAAAGA GGACGCACTAGAGGTTGGTGTTGACGAGGATGAGTTCGATGCCGAAGTTG ATGACAAACGTCACTCAAAAAGTAGACGGTCAAAAACAAGGAAGCGAAGC AGCGAAAAGGAAAATATAGAAGATTCCTCTCTCAAATCATCAGCACCCTC TCCAACTTCTCAAGAAGTGAAAACCAATATGAAAAGAGAAAGTGGAGATG AGGAACTAGACTACAATGATGATTTACCTGCTACTGAGGACGGTGTGCTT GTCATTCCTGATGAGACAACTGATTTAACATTCTCTGTTGATGTTACTGA CGATTTAGCGCAAGAACTAAACTCTGAACCTGAGGAACGGTCTAAACACA AAaagaaaccaatcaaaatagtgaaaaaaatACCGAGTGTTGCTAGCCGG ATATCAAAACATACCAGTAATGATACAACGCGAGACCGTCGTCAGGAACG TTCGAAAAATAAAAGGACTATACAAGTTGTCGATGATGAATCTCCGGAtc ataaaaaagagaaaagcgAACCTGGAAAAAAGACAGAAACCAAGAAAGTT ATATCATTAGTAGGGAAAAAAGGTACAGGCAAAAATGATAGTGCTTCTAC TGAGGAAAAAGATGCACCTGAGGTAGTGGAGgtagtaaaaataaaaacat ttgaagAAATCATGGCTGAAAAACGTAAACGTAAACTTCAAAAAGCTGAC GTGGTTGTTGTTTCTGATAGTGATTCTTTAGAGTCACCTGATAAGAAGCC CTTTAGTGACTCACCGTCCAAAATGAAAGGACTTCCATCTATCGCCACTG TCTCCCAACCAGCACCACCTCCGAAAACAGCTGCACAATTGCGCCGTGAA AAGCTTCAGTTGGCTAAACAAGAATACGAAAAGAGGAGGAAATCTCAACA GTTGTATCAAGTCAAAAGCAGCCAAGGTACGTTctttataaacatttttt atcgGAAAAGGTTTATGTTAGCCTTTTTTCAGTTAGCTGAAATTCTGTCA TTGTATATTTCACTCATGAAACTCTGACATGCAGGTTACATCTATTCTCG TGATTTGACCAAGTTCTCTCTGCATTGTATGATTTCTTGAAATAGTGAAC TCaaagaaattattttctcaTAATCATATACTTCCTTTAGCGGCTACAAC GAAACCACTTGATGTGAGAACGGCAAGTCCCGTTAAAACACCAATTACTG CTCCTACATCAACAGAGACCAATGCTGCCAAGACCATCAAGGTTCGTATT TTATgagaaattcatgatatgcaccactgcaatggcttcacgaaattatg caacaaAAATTATCCACccttccacccaatacgtcacttgaaaaatgggt ggaaaattttaaaagttctcagaagactctccagtggtgcatgtCATGAA TAAGTAATTCAAAGAACTGTGATTTCGAATAATAGTCAAATTAAATTCTG AAATAACGCTGCCTCCTTAAGATTGTTACCAATATAGTCCATAGTGATCC ACAGTGTGTCCAGAAAAAGGCATGAACAGCATTTATACAAATAAAAATCC TCAGATCTTACATAAACTTGACCTAAGGTTCTCGATCTCTTTTTCGAGAT CCCAATTTAATATAATCTTGGGAATTCAATGTTCAATATATTTATTGCAC AACAAAGACATTATATCCATTCTAACCTCCAGTGGTTTAGTCAgttttat attatataaaatCTACCCCGCTTTATTTTGGGCACACTGTACATTTGCAA GCCATTGTTGAATAAGTTCCACTTCCACCTAAAGCAAAACCTTCTAAGGG CTTTCTAgctataaattttatttttcatttctacaGTTAACACGACCAAC AGTCACAGCACCCACCAAAGTTGCTAACGCTCCTACCACTGAGAACGCAA GCGGGGTCTCTGTTCGCTCTTTTGAAGAAATcatgaaagaaaaaagtcta CGTAAACAACGTGAAATGCAGGGACAACAAAACAAGGTCGAAGCTAAACC TATACAGAGTTTCCTACGACGTCGTTCTCTATCCAATCAACGCAATCAAA CACAACCTGGAATCACCACTTCAGTTAGTAACGACAGTACCAAAAGCACT GAGAAAACTGTTCCAGCTACGACAGCCGTGATTGCAGAAACCGAAACAGC AAAAGAAACTACGACAATGGTTCTACCGCCGGTTGCGAAAATTATCGGTC GACGACGAAGCTCCTCACCACTTCAACCAGGAGTCGAGGTCACTAAAGTT GCCCCCATCAAAATCAAACGAAAACTCTCCTCATCGTCCAGCTCGGACCT GGCGAAATCAAGAACACAAACGCCTCCACCACAAGTTGTTCCTACAATAC CCGCAAAATCTGACGACGTTTTCGATACACTGAAAGACGTCAGGGCAAAC AACGAATCATCGACGAACGGAGCATCTCCGATTGCGGAAGAGACAGAACC ACTTTCACAAGCTTCAATGGAAGACATACAGGAAGCACTGTAAGTAAAAC TTCTGTATAGTCCAGGGAAAGTGTGCATCAATTGTGCGTTTTTgactaga aagcatgaaatttggtacagtggtacctcagggggtaagaaacattttaa gcctctgGCCCACTTCCGGAACAcctttttgtgtattttacagaccagaa tgctTCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_021806XLOC_021806Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00036916-exon-sc0001535-1491911889:27817..27867TCONS_00036916-exon-sc0001535-1491911889:27817..27867Clytia hemisphaericaexon
TCONS_00036916-exon-sc0001535-1510915933:27817..27867TCONS_00036916-exon-sc0001535-1510915933:27817..27867Clytia hemisphaericaexon
TCONS_00036916-exon-sc0001535-1575043694:27817..27867TCONS_00036916-exon-sc0001535-1575043694:27817..27867Clytia hemisphaericaexon
TCONS_00036916-exon-sc0001535-1491911889:37876..38055TCONS_00036916-exon-sc0001535-1491911889:37876..38055Clytia hemisphaericaexon
TCONS_00036916-exon-sc0001535-1510915933:37876..38055TCONS_00036916-exon-sc0001535-1510915933:37876..38055Clytia hemisphaericaexon
TCONS_00036916-exon-sc0001535-1575043694:37876..38055TCONS_00036916-exon-sc0001535-1575043694:37876..38055Clytia hemisphaericaexon
TCONS_00036916-exon-sc0001535-1491911889:38270..38779TCONS_00036916-exon-sc0001535-1491911889:38270..38779Clytia hemisphaericaexon
TCONS_00036916-exon-sc0001535-1510915933:38270..38779TCONS_00036916-exon-sc0001535-1510915933:38270..38779Clytia hemisphaericaexon
TCONS_00036916-exon-sc0001535-1575043694:38270..38779TCONS_00036916-exon-sc0001535-1575043694:38270..38779Clytia hemisphaericaexon
TCONS_00036916-exon-sc0001535-1491911889:39279..39372TCONS_00036916-exon-sc0001535-1491911889:39279..39372Clytia hemisphaericaexon
TCONS_00036916-exon-sc0001535-1510915933:39279..39372TCONS_00036916-exon-sc0001535-1510915933:39279..39372Clytia hemisphaericaexon
TCONS_00036916-exon-sc0001535-1575043694:39279..39372TCONS_00036916-exon-sc0001535-1575043694:39279..39372Clytia hemisphaericaexon
TCONS_00036916-exon-sc0001535-1491911889:39607..39642TCONS_00036916-exon-sc0001535-1491911889:39607..39642Clytia hemisphaericaexon
TCONS_00036916-exon-sc0001535-1510915933:39607..39642TCONS_00036916-exon-sc0001535-1510915933:39607..39642Clytia hemisphaericaexon
TCONS_00036916-exon-sc0001535-1575043694:39607..39642TCONS_00036916-exon-sc0001535-1575043694:39607..39642Clytia hemisphaericaexon
TCONS_00036916-exon-sc0001535-1491911889:39863..39931TCONS_00036916-exon-sc0001535-1491911889:39863..39931Clytia hemisphaericaexon
TCONS_00036916-exon-sc0001535-1510915933:39863..39931TCONS_00036916-exon-sc0001535-1510915933:39863..39931Clytia hemisphaericaexon
TCONS_00036916-exon-sc0001535-1575043694:39863..39931TCONS_00036916-exon-sc0001535-1575043694:39863..39931Clytia hemisphaericaexon
TCONS_00036916-exon-sc0001535-1491911889:40052..40084TCONS_00036916-exon-sc0001535-1491911889:40052..40084Clytia hemisphaericaexon
TCONS_00036916-exon-sc0001535-1510915933:40052..40084TCONS_00036916-exon-sc0001535-1510915933:40052..40084Clytia hemisphaericaexon
TCONS_00036916-exon-sc0001535-1575043694:40052..40084TCONS_00036916-exon-sc0001535-1575043694:40052..40084Clytia hemisphaericaexon
TCONS_00036916-exon-sc0001535-1491911889:40630..40740TCONS_00036916-exon-sc0001535-1491911889:40630..40740Clytia hemisphaericaexon
TCONS_00036916-exon-sc0001535-1510915933:40630..40740TCONS_00036916-exon-sc0001535-1510915933:40630..40740Clytia hemisphaericaexon
TCONS_00036916-exon-sc0001535-1575043694:40630..40740TCONS_00036916-exon-sc0001535-1575043694:40630..40740Clytia hemisphaericaexon
TCONS_00036916-exon-sc0001535-1491911889:40955..41005TCONS_00036916-exon-sc0001535-1491911889:40955..41005Clytia hemisphaericaexon
TCONS_00036916-exon-sc0001535-1510915933:40955..41005TCONS_00036916-exon-sc0001535-1510915933:40955..41005Clytia hemisphaericaexon
TCONS_00036916-exon-sc0001535-1575043694:40955..41005TCONS_00036916-exon-sc0001535-1575043694:40955..41005Clytia hemisphaericaexon
TCONS_00036916-exon-sc0001535-1491911889:41304..42542TCONS_00036916-exon-sc0001535-1491911889:41304..42542Clytia hemisphaericaexon
TCONS_00036916-exon-sc0001535-1510915933:41304..42542TCONS_00036916-exon-sc0001535-1510915933:41304..42542Clytia hemisphaericaexon
TCONS_00036916-exon-sc0001535-1575043694:41304..42542TCONS_00036916-exon-sc0001535-1575043694:41304..42542Clytia hemisphaericaexon
TCONS_00036916-exon-sc0001535-1491911889:42757..42857TCONS_00036916-exon-sc0001535-1491911889:42757..42857Clytia hemisphaericaexon
TCONS_00036916-exon-sc0001535-1510915933:42757..42857TCONS_00036916-exon-sc0001535-1510915933:42757..42857Clytia hemisphaericaexon
TCONS_00036916-exon-sc0001535-1575043694:42757..42857TCONS_00036916-exon-sc0001535-1575043694:42757..42857Clytia hemisphaericaexon
TCONS_00036916-exon-sc0001535-1491911889:43453..44273TCONS_00036916-exon-sc0001535-1491911889:43453..44273Clytia hemisphaericaexon
TCONS_00036916-exon-sc0001535-1510915933:43453..44273TCONS_00036916-exon-sc0001535-1510915933:43453..44273Clytia hemisphaericaexon
TCONS_00036916-exon-sc0001535-1575043694:43453..44273TCONS_00036916-exon-sc0001535-1575043694:43453..44273Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001535supercontigsc0001535:27817..44273 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
9.76702 9.12982 5.29625 5.39831 40.4758 29.9747 28.7411 34.5716 18.9971 22.7549 25.6925 14.0212 14.1066 23.9332 10.7201 11.5183 18.2673 15.114 13.8105 7.88235 5.64052 4.52844 11.4478 12.1096 25.3735 19.2575 5.13817 13.145 13.6867 14.457
Blast
BLAST of TCONS_00036916 vs. Swiss-Prot (Human)
Match: ZC11A (Zinc finger CCCH domain-containing protein 11A OS=Homo sapiens GN=ZC3H11A PE=1 SV=3)

HSP 1 Score: 87.4261 bits (215), Expect = 2.144e-17
Identity = 37/97 (38.14%), Postives = 56/97 (57.73%), Query Frame = 1
Query:  190 GEDCHYFITSTCTRGNQCCFRHQPAAKTTEQSCPEWIQGKCLNPNCNLRHIAVDRTGHRNKLTPKVCFYDSQPTGCLNPLCKFVHTKKKAVEPVVIP 480
            GEDC++F  STCT+G+ C FRH  AA   E  C  W +G+C    C  RH+ +D+     K +   C++++QPTGC    C F H + + V+ + +P
Sbjct:    5 GEDCYFFFYSTCTKGDSCPFRHCEAAIGNETVCTLWQEGRCFRQVCRFRHMEIDK-----KRSEIPCYWENQPTGCQKLNCAFHHNRGRYVDGLFLP 96          
The following BLAST results are available for this feature:
BLAST of TCONS_00036916 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ZC11A2.144e-1738.14Zinc finger CCCH domain-containing protein 11A OS=... [more]
back to top