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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00036915 ID=TCONS_00036915|Name=TCONS_00036915|organism=Clytia hemisphaerica|type=transcript|length=1909bp
CAAAAATTGTCccaattgaaaatcaaaagtgTAGAAATAAGAAAGTTCAA
TCCTAAAACAGATGCAAAAAGATTAACTGAAATATGGGTTAATGGTTTAG
ACCAATCAGTAGACTCTCAATGGTGGTGGAACCGTGCTTATTGGAGAGAA
TTCTTCTCTCAGTATGCAAAAGATGCAACTGCAGTTGATGGAGATATGGG
CCCAGAAGGTACTAATCTTGAAAAATCGTGGTGTTTTGATGAAGAGAATG
TACTAATCTTGAAAAATCATGGTGTTTCGATGAAGAGAATGTACAAATGT
TGGTTGCTGAGCTCATATTTCAAGATCCAAAGTTGGCACATCTTCTAGTT
GGAAGCATAGGAATCAAGAGAGGGTATGAGCACAGCAAAGATGGAACAAT
TTTCACAATTTGGAAAATGTCAGTTGACATAAACTACAGAGGATATTCTA
TAGGTGGAAAACTGTTATTAGAAGgagaaaaatgggcaaaacAAAAAGGA
GGCACGAAAATAACAGCAGCATCGATGAATCCGATAGCTagtaaatttta
tttaaaacatGGTTATGAATGGTCCGAGTGGTCTTGGTGGGATTGGATTG
TTTTCAAATACATTGGATCAATGAATGGGAAATTGCATGAAAAAACTTTA
GGGTAAAATTAGCAACCTAGAAACTGGAAATCCCCACATTGCAAAACTCT
GACAAATTTTTAGAACTCTAGAAATAAAACTCTTGTTTATAACCTAGACT
ATTGAAGCTTTCTGATCATGTAAAAAATATTAGTAATGgtgatattttct
ttgaatttggtGATGTGGGCATCAATAGATGTACCCTGTACATGACATCT
TCATTTTAATTTGCCTCTTAAAACCCTTTGTGCATCTTGGGGTCTCCCCc
caagttttcaaaaacttttctgaTCTTTATTCAACCTTcttaaaatttga
cattttttggtgaaaatttcgacatcattgatgacgtcattctaacatat
ttttggtcaaaattctttcaTCTGCTGGTATCCTGTATTCTAATGACTTG
TCAACAATTGCCCcttttgcctaaataacccctggGTTACTGTATCCTGG
GACTGGAAATGCTGATGGCTTGAAATTTAAAGTTAAGTTTTTAAAAAGTG
TTGTtgcgaaaatctattttttctaGCCACACGTTAAATTAAATTCCCCC
TAAAATAAAGTTTACTTTTAACATACAAAATGTTTAACTTGATAATTTAG
TCTTACTGGACAGGTCTTCAGCAATGTCATGAAAGATAAAATAACCTATA
GTTCAATATTCCTTGGCTGCATCCATAGTCAAACGCAACGCACTGGACTC
AACTTTTGTGGCTTCTAATTATTTAATATAGGCACAATTGTAGCaacaaa
aagacaatgaaatgaATGAATGTTTAGTCATGTGGAAAATTCATCTTTTG
TActatattttgataatattggAAAATTCAACCTTTTGAGTGGAAtaaat
gaatttgatatttttcttctaattttttcttacttttttgaaCTCCATCA
ATTTCAGATGACTAAAGGTTGTGGTCCACTTAGCCTTTTTTGGTCGCCGT
TCAATGCGCACGGctcgaaaaaaattgggggcCACTTATCTTTCAACCTA
TAGTAGTTTTTTAGATATTCCATTTCAAAGttccattttttgaagatttc
tgtaCAAAAACATCCCGCCATCTTGTAACATCTCCACAGCACTGAAATGG
AAAgtgtttcataaaaaaatgtacGCAGAAAATTTGGGGCGAGAGTGTTT
TTCCATATCAAGAGCTGTAGACGTGGGTCACTTTACCTTTAACTTTCCCT
TAGCACTTTCCACCCGAAACTATTTGGTTAgagattaaaagaaaaaaatt
acagtgcAC Run BLAST on NCBI transcript from alignment at sc0001535:9494..13545+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00036915 ID=TCONS_00036915|Name=TCONS_00036915|organism=Clytia hemisphaerica|type=transcript|length=4052bp|location=Sequence derived from alignment at sc0001535:9494..13545+ (Clytia hemisphaerica)
CAAAAATTGTCccaattgaaaatcaaaagtgTAGAAATAAGAAAGTTCAA
TCCTAAAACAGATGCAAAAAGATTAACTGAAATATGGGTTAATGGTTTAG
ACCAATCAGTAGACTCTCAATGGTGGTGGAACCGTGCTTATTGGAGAGAA
TTCTTCTCTCAGTATGCAAAAGATGCAACTGCAGTTGATGGAGATATGGG
CCCAGAAGGTACTAATCTTGAAAAATCGTGGTGTTTTGATGAAGAGAATG
TACAAATGTTGGTTGCTGAGCTCATATTTCAAGATCCAAAGATGGCACAT
CTTCTAGTTGGAAGCATAGGAATCAAGAGAGGGTATGAGCACAGCAAAGA
TGGAACAATTTTCACAATTTGGAGAATGTCAGTTGACATAAACTACAGAG
GATATTCTATAGGTGGAAAACTGTTATTAGCAGgagaaaaatgggcaaaa
cAAAAAGGAGGCACGAAAATGAGCGCAGAATCAATGAATCCGATAGctat
taaattttatttgaaacatGGTTATGAATGGTCGGAGTGGTCTTGGTGGG
ATTGGATTGTTttcaaatgcattggatcaattGGGatcaaatttcatgaa
aaaactTTAGCGTAAATAGAAACCTAGAAACTGGAAATCCCCACATTGCA
AaactttgacaaattttttgaacTCTAGAAATAAAGCACTTTATTTCAAA
ACCGTTGTCATGTTAACAAGTTTACCTTGAAACTTTATGACACCAAGAAC
AACTGGTGCTTAtcaatttctaaaatatgaAACTGCACTACTTTCCAACC
ATTACATCCAATCTCGTTTATTATTCATTTATTAATTCGTTTGAGTGTTA
atctcaggtgcctaataaataATATGCTGGTGGGTTtagaaataatttca
aaacatgaTTAACGAGAGGAACCTATTTCCTTGAGATCAGTAAAAGTGTT
CTCATGAATACCCCCAAAATAAGATAAATAGACTTAATTCAGGTaatttg
gagcaaaataagggattCTTCTGTCAActgctaaaaattattttcaaaaa
ttaacaaaaaaagggCGCTGTTCATTAGGCAACTGATATTAGATTAATCA
ATTCTTTTGGGtagaatatttttatatatagCCTTTTTTAGTTCATTTTA
TCAACAGTTTTTTGATAggtcatttcatttttttttaaggaCGTGTATAA
AATGTTGTAGTTAAAATGCTGACATTTTGTGATGTGCAATTTGAatcagt
aaaaaataaaataagtgAAAACAACATTCTATAAATACATAACAACATTA
GAGTTTTTGTTTCAGGGGCAACCGTAACAAACCTTCTCTTTAagaagatg
ttcttttaaaaaagtcggtttttacatttctctatcatgtgGTCGGTTCA
GTTGCTCATGTGGtcagttcagttgttcacgtgttaggaACAAAAAATCT
CTGTATATAAAAgattaaatgttttgaaatatttttcattgttgCGAATA
TAAAAAGATGATAAGTTTTTGATTGTTCATGAGTTTCACTACTTGAATCA
ATTAATTAATTGGGGAGTtcctaaacatcgaccagaaatgacgaccacga
ccagcgaccacgaccggcgaccacgaccggcgaccagataattTTTAGTT
ATCGAGTTTTTCTCTTGTCGATGTTTAGAGACTCCCAATTAATTATCTTA
ACTTTAGAAAACGTTATTATAATGGAGGGTTACAATTATAAAGAAATACT
GTACAAatataattttctttgaatgaacTTCAAAGTCATGAGGTGGTGCA
TGCAGGTTTAATTGTTTCTGATTATTTAATCAAAATCAGTCATCAGCAAC
GCAAGATGACAAAGTTGATTTTTAATAATGGATTCTTTGCAACACAGTCA
ATCAAAAAACAATCTATTTTTGAATTATGCATTTAAAAACGTGAGTTATT
GCATGCACAATTCCTTTAATCTATCTTCCATTTAAATGATCTgcttattt
tgcaaaataactttagcagttttttttttcataaggaaGATATCAATTAA
TATTGCTTACATAGACAATATTGTTTTAGGTATCTCAAAATATTGCAGTA
ATTACACTAGATTTGTAAACATATAAAAAGACTTCACAAACCTCAATTCA
ATCTGAGCaacattttcactaaaaaatggCAGAGCAAAAATTGTCccaat
tgaaaatcaaaagtgTAGAAATAAGGAAGTTCAATCCTAAAACAGATGCA
AAAAGATTAACTGAAATATGGGTTGATGGTTTGAGGCAAACAGTCGACTC
TCAATGGTGGTGGAAACGTGTTTATTGGAGAGAACTCTTCTCTCAGTATG
CAAAAGATGCAACTGCAGTTGATGGAGATATGGGCCCAGAAGGTACTAAT
CTTGAAAAATCATGGTGTTTCGATGAAGAGAATGTACAAATGTTGGTTGC
TGAGCTCATATTTCAAGATCCAAAGTTGGCACATCTTCTAGTTGGAAGCA
TAGGAATCAAGAGAGGGTATGAGCACAGCAAAGATGGAACAATTTTCACA
ATTTGGAAAATGTCAGTTGACATAAACTACAGAGGATATTCTATAGGTGG
AAAACTGTTATTAGAAGgagaaaaatgggcaaaacAAAAAGGAGGCACGA
AAATAACAGCAGCATCGATGAATCCGATAGCTagtaaattttatttaaaa
catGGTTATGAATGGTCCGAGTGGTCTTGGTGGGATTGGATTGTTTTCAA
ATACATTGGATCAATGAATGGGAAATTGCATGAAAAAACTTTAGGGTAAA
ATTAGCAACCTAGAAACTGGAAATCCCCACATTGCAAAACTCTGACAAAT
TTTTAGAACTCTAGAAATAAAACTCTTGTTTATAACCTAGACTATTGAAG
CTTTCTGATCATGTAAAAAATATTAGTAATGgtgatattttctttgaatt
tggtGATGTGGGCATCAATAGATGTACCCTGTACATGACATCTTCATTTT
AATTTGCCTCTTAAAACCCTTTGTGCATCTTGGGGTCTCCCCccaagttt
tcaaaaacttttctgaTCTTTATTCAACCTTcttaaaatttgacattttt
tggtgaaaatttcgacatcattgatgacgtcattctaacatatttttggt
caaaattctttcaTCTGCTGGTATCCTGTATTCTAATGACTTGTCAACAA
TTGCCCcttttgcctaaataacccctggGTTACTGTATCCTGGGACTGGA
AATGCTGATGGCTTGAAATTTAAAGTTAAGTTTTTAAAAAGTGTTGTtgc
gaaaatctattttttctaGCCACACGTTAAATTAAATTCCCCCTAAAATA
AAGTTTACTTTTAACATACAAAATGTTTAACTTGATAATTTAGTCTTACT
GGACAGGTCTTCAGCAATGTCATGAAAGATAAAATAACCTATAGTTCAAT
ATTCCTTGGCTGCATCCATAGTCAAACGCAACGCACTGGACTCAACTTTT
GTGGCTTCTAATTATTTAATATAGGCACAATTGTAGCaacaaaaagacaa
tgaaatgaATGAATGTTTAGTCATGTGGAAAATTCATCTTTTGTActata
ttttgataatattggAAAATTCAACCTTTTGAGTGGAAtaaatgaatttg
atatttttcttctaattttttcttacttttttgaaCTCCATCAATTTCAG
ATGACTAAAGGTTGTGGTCCACTTAGCCTTTTTTGGTCGCCGTTCAATGC
GCACGGctcgaaaaaaattgggggcCACTTATCTTTCAACCTATAGTAGT
TTTTTAGATATTCCATTTCAAAGttccattttttgaagatttctgtaCAA
AAACATCCCGCCATCTTGTAACATCTCCACAGCACTGAAATGGAAAgtgt
ttcataaaaaaatgtacGCAGAAAATTTGGGGCGAGAGTGTTTTTCCATA
TCAAGAGCTGTAGACGTGGGTCACTTTACCTTTAACTTTCCCTTAGCACT
TTCCACCCGAAACTATTTGGTTAgagattaaaagaaaaaaattacagtgc
AC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00036915-exon-sc0001535-1491911889:9494..9742 | TCONS_00036915-exon-sc0001535-1491911889:9494..9742 | Clytia hemisphaerica | exon |
| TCONS_00036915-exon-sc0001535-1510915933:9494..9742 | TCONS_00036915-exon-sc0001535-1510915933:9494..9742 | Clytia hemisphaerica | exon |
| TCONS_00036915-exon-sc0001535-1575043694:9494..9742 | TCONS_00036915-exon-sc0001535-1575043694:9494..9742 | Clytia hemisphaerica | exon |
| TCONS_00036915-exon-sc0001535-1491911889:11886..13545 | TCONS_00036915-exon-sc0001535-1491911889:11886..13545 | Clytia hemisphaerica | exon |
| TCONS_00036915-exon-sc0001535-1510915933:11886..13545 | TCONS_00036915-exon-sc0001535-1510915933:11886..13545 | Clytia hemisphaerica | exon |
| TCONS_00036915-exon-sc0001535-1575043694:11886..13545 | TCONS_00036915-exon-sc0001535-1575043694:11886..13545 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001535 | supercontig | sc0001535:9494..13545 + |
Blast
The following BLAST results are available for this feature:
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