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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00036912 ID=TCONS_00036912|Name=TCONS_00036912|organism=Clytia hemisphaerica|type=transcript|length=2675bp GTGAGTTCCAAGGAATAAATAGAAATATACTGTTAAAGCGTTAAAAACTT CCATTACAAATATATATTGCATGCATTATGAAGGCCAATAATCATATAGA ATCTACAAGATTTTACTCACAATGgactaaaaaaataattaaaatactaG CTACAATGAAATTTGCGTTctaaatgacaaaaaaatacaaaattttagaa aaatgttaTTTATACAATGATTACTACCTGTTTAGCATTAAAACAGATCA AGGCGTTAATAAATCAGACTTTCAAGAGTCAAAAAGTTTGCTCAAAAcgc ttttccttttttctttcctACGTAAAGATTTTCGCGTTCCAAGTATTTGA AGGAAAATCATTGGTTGTTCATTTGATCGGTGATTCTGCCAAAGAGAGGT TTTTCTTTGATGCAATAATAAGCTCTTTGTTGATGTTGAAAGCCTTGTGA TTCGTACTCAATCTCTAAATGAATGTCAATATTTCCTTCCAATCTTTCGA TGTTTGAAATCCGCACAATCTTATCCTCTAAACGGATGCCTTTCTCTTTT CGTTCGGGAGATATGGTTTCCACGTTTGCACCTCCGATGCGTTCGGGAAG AAAGAAAACCACACTTGGTGAATCACAAGGCGTCTTTTCAATGACTTTGC TTTGGATCAAGAGACAATTTGAGAATTCGGGCGTGAAAATCAACTGCACG ATCACGTGATCATTTTCAAGCGCAACCACTGGTGAATAAGGAGCAACATG AGCTTGTTGCCATGCCACCACGTTATCTGTAATCTTGTTAGAGCGCTGGA TCTCATCCGTCAAACGGAGATCATTGACAACAGTAGAATGGCGATAAACG ACTTGTGTGCGACCTGTTGCTGGATCAACAATTTGATCTTCATGAATTCC TTTTGATACCAAaaacatgacgtcatcaattttaacatttttggacATGT TTTCGAGAAGGTGAAGAGCGAAGTATCCATTCCTCATTTGAGGCGACTCC AAGACGCGACCTCGAGCGCAACAACCATAACCGATCGTTACATTTTTTCG TTGTAAGGCTGTCCGGTTTGATTTATTAAGGATGGGGTCGTTCCGACAGA GTTCCGGTTGCGTTCGGCATGAATCAACCAACAAGACGGACAACTTTGGG TTCTTCTCGGTTAGTGGGGCGATAACTTCAGTCAGGGAGAGGTTTTCTTC TGGACGGTATTTAGCGGTGGCATCGAGTGCCATCATGTAACTCTCGCCGT CAATCTCAAACCCGTGACCAGCAAAATAGAACAAAGCATATGTCCCTGAA TTTAACAGTCCACAAAAAAATTTCACAGCATTCCTCATGTCCTTTAAGTT TAGATTAATTAGCGACACAACCTTAAAATTTAAACTTCGAAGTTCAGCTG AGATGTCGTGAGCATCATTGACAGGATGAACTAAATGCCCTAATGCGTCA CTGTAAACGTAATCCTGGTTACCTATAACCAGAGCAATTTTCTCGGTTGG TGCGCTTGGCGGTTGAATGGAAAAGCCGTGCTCAGTGTTGATATCTTCAG GTCCTCTGATGCCACTTTGAGGTGTCTTTTTCTCAGGTGACTGAGGGCAG CTTGGAGGTAAAGGCGCCTTCTTAACAGTAACTTGTGCTTTTATAGAACG AGTGGATGTAAATTTATTGGACGCTTCAAAATAGTAGAAACCCTCTTTAT CTTGCGTCATGGATTCGATTCTCAAATGTCGACTACATTCTCCGACCAGT GGCTGGTCTTCAAAATACCATTGGAGGGTTGGAGACGGGTCGCCAACAGC GTCGGCAAGAAGTTCAAGCGGTTGGTTAAAATAACAGACGGCTGAACGTG GATGCATGGTAATGACTGGTGTATTAAAAATACTATTACTTTGGTGGACG AAGGTTGGCATTTCAGCCACCTCTACTTTACACCATGCTGAATAAATATA ATCAAACTCGTTGACCACTCGGCACGTGTAGAAACCACCATTTTGCATCG AGGCTTTCTCGATAAACAAAGCTCTTTTATCACATCCTCGTAATTCCGTA TTCCCTTTAAACCATTGGTATTTGAAAGGTGCTCGGCCACTTACTTCGAC TGATAACTCAAAACTGTCATCAGCGGCACATGACAGCGACTCGGGTTGTC GGTCAATGGTGGGGGCCAGTTCTCTTAAAGCTTGATCACCACGCTCAAGG AAACTTATGAGTTCTCCTGAATCACCAACTTGATTTAACCATTGAATCAG CTGTCCCACAGTTTTTTTCTTACGACCAAGGTCCTCCAGTAAAGCCAACG TTGGACTTCCCCGTGGCTTGAGAATTGCCATATGGAAACGCAAGACTGCT TTTTCATCGTAAAGATTCTTCGGCATTTTACTAATCAAGGTTTTCCAGTT CGGTTTCTCAAGAGAATCGAACTTCTCAGCAATTTTCCAACAGATTGGAT TTGATAAATCTTTGATGTAGCCATCTACCGGTGCCATGTTTGACCAAGGA TGAAAAAGCGTTTTTGTTGTAATTTTCTATAGTTCTCTAAAAGCAAATAA GGAAGATGTGATTAGtctagagcaaaaaaacattaatGATGAGCCGAAGA TTTTCAAAGTTGTGGCAAATTTCAACAATACAAGAATCCTCCCTTGGAGA AGAAAATAAAAGTGCAAGAATCCTA Run BLAST on NCBI protein sequence of TCONS_00036912-protein >TCONS_00036912-protein ID=TCONS_00036912-protein|Name=TCONS_00036912-protein|organism=Clytia hemisphaerica|type=polypeptide|length=709bp
MAPVDGYIKDLSNPICWKIAEKFDSLEKPNWKTLISKMPKNLYDEKAVLR FHMAILKPRGSPTLALLEDLGRKKKTVGQLIQWLNQVGDSGELISFLERG DQALRELAPTIDRQPESLSCAADDSFELSVEVSGRAPFKYQWFKGNTELR GCDKRALFIEKASMQNGGFYTCRVVNEFDYIYSAWCKVEVAEMPTFVHQS NSIFNTPVITMHPRSAVCYFNQPLELLADAVGDPSPTLQWYFEDQPLVGE CSRHLRIESMTQDKEGFYYFEASNKFTSTRSIKAQVTVKKAPLPPSCPQS PEKKTPQSGIRGPEDINTEHGFSIQPPSAPTEKIALVIGNQDYVYSDALG HLVHPVNDAHDISAELRSLNFKVVSLINLNLKDMRNAVKFFCGLLNSGTY ALFYFAGHGFEIDGESYMMALDATAKYRPEENLSLTEVIAPLTEKNPKLS VLLVDSCRTQPELCRNDPILNKSNRTALQRKNVTIGYGCCARGRVLESPQ MRNGYFALHLLENMSKNVKIDDVMFLVSKGIHEDQIVDPATGRTQVVYRH STVVNDLRLTDEIQRSNKITDNVVAWQQAHVAPYSPVVALENDHVIVQLI FTPEFSNCLLIQSKVIEKTPCDSPSVVFFLPERIGGANVETISPERKEKG IRLEDKIVRISNIERLEGNIDIHLEIEYESQGFQHQQRAYYCIKEKPLFG RITDQMNNQ Run BLAST on NCBI transcript from alignment at sc0001534:32089..34763 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00036912 ID=TCONS_00036912|Name=TCONS_00036912|organism=Clytia hemisphaerica|type=transcript|length=2675bp|location=Sequence derived from alignment at sc0001534:32089..34763 (Clytia hemisphaerica) TAGGATTCTTGCACTTTTATTTTCTTCTCCAAGGGAGGATTCTTGTATTG
TTGAAATTTGCCACAACTTTGAAAATCTTCGGCTCATCattaatgttttt
ttgctctagaCTAATCACATCTTCCTTATTTGCTTTTAGAGAACTATAGA
AAATTACAACAAAAACGCTTTTTCATCCTTGGTCAAACATGGCACCGGTA
GATGGCTACATCAAAGATTTATCAAATCCAATCTGTTGGAAAATTGCTGA
GAAGTTCGATTCTCTTGAGAAACCGAACTGGAAAACCTTGATTAGTAAAA
TGCCGAAGAATCTTTACGATGAAAAAGCAGTCTTGCGTTTCCATATGGCA
ATTCTCAAGCCACGGGGAAGTCCAACGTTGGCTTTACTGGAGGACCTTGG
TCGTAAGAAAAAAACTGTGGGACAGCTGATTCAATGGTTAAATCAAGTTG
GTGATTCAGGAGAACTCATAAGTTTCCTTGAGCGTGGTGATCAAGCTTTA
AGAGAACTGGCCCCCACCATTGACCGACAACCCGAGTCGCTGTCATGTGC
CGCTGATGACAGTTTTGAGTTATCAGTCGAAGTAAGTGGCCGAGCACCTT
TCAAATACCAATGGTTTAAAGGGAATACGGAATTACGAGGATGTGATAAA
AGAGCTTTGTTTATCGAGAAAGCCTCGATGCAAAATGGTGGTTTCTACAC
GTGCCGAGTGGTCAACGAGTTTGATTATATTTATTCAGCATGGTGTAAAG
TAGAGGTGGCTGAAATGCCAACCTTCGTCCACCAAAGTAATAGTATTTTT
AATACACCAGTCATTACCATGCATCCACGTTCAGCCGTCTGTTATTTTAA
CCAACCGCTTGAACTTCTTGCCGACGCTGTTGGCGACCCGTCTCCAACCC
TCCAATGGTATTTTGAAGACCAGCCACTGGTCGGAGAATGTAGTCGACAT
TTGAGAATCGAATCCATGACGCAAGATAAAGAGGGTTTCTACTATTTTGA
AGCGTCCAATAAATTTACATCCACTCGTTCTATAAAAGCACAAGTTACTG
TTAAGAAGGCGCCTTTACCTCCAAGCTGCCCTCAGTCACCTGAGAAAAAG
ACACCTCAAAGTGGCATCAGAGGACCTGAAGATATCAACACTGAGCACGG
CTTTTCCATTCAACCGCCAAGCGCACCAACCGAGAAAATTGCTCTGGTTA
TAGGTAACCAGGATTACGTTTACAGTGACGCATTAGGGCATTTAGTTCAT
CCTGTCAATGATGCTCACGACATCTCAGCTGAACTTCGAAGTTTAAATTT
TAAGGTTGTGTCGCTAATTAATCTAAACTTAAAGGACATGAGGAATGCTG
TGAAATTTTTTTGTGGACTGTTAAATTCAGGGACATATGCTTTGTTCTAT
TTTGCTGGTCACGGGTTTGAGATTGACGGCGAGAGTTACATGATGGCACT
CGATGCCACCGCTAAATACCGTCCAGAAGAAAACCTCTCCCTGACTGAAG
TTATCGCCCCACTAACCGAGAAGAACCCAAAGTTGTCCGTCTTGTTGGTT
GATTCATGCCGAACGCAACCGGAACTCTGTCGGAACGACCCCATCCTTAA
TAAATCAAACCGGACAGCCTTACAACGAAAAAATGTAACGATCGGTTATG
GTTGTTGCGCTCGAGGTCGCGTCTTGGAGTCGCCTCAAATGAGGAATGGA
TACTTCGCTCTTCACCTTCTCGAAAACATgtccaaaaatgttaaaattga
tgacgtcatgtttTTGGTATCAAAAGGAATTCATGAAGATCAAATTGTTG
ATCCAGCAACAGGTCGCACACAAGTCGTTTATCGCCATTCTACTGTTGTC
AATGATCTCCGTTTGACGGATGAGATCCAGCGCTCTAACAAGATTACAGA
TAACGTGGTGGCATGGCAACAAGCTCATGTTGCTCCTTATTCACCAGTGG
TTGCGCTTGAAAATGATCACGTGATCGTGCAGTTGATTTTCACGCCCGAA
TTCTCAAATTGTCTCTTGATCCAAAGCAAAGTCATTGAAAAGACGCCTTG
TGATTCACCAAGTGTGGTTTTCTTTCTTCCCGAACGCATCGGAGGTGCAA
ACGTGGAAACCATATCTCCCGAACGAAAAGAGAAAGGCATCCGTTTAGAG
GATAAGATTGTGCGGATTTCAAACATCGAAAGATTGGAAGGAAATATTGA
CATTCATTTAGAGATTGAGTACGAATCACAAGGCTTTCAACATCAACAAA
GAGCTTATTATTGCATCAAAGAAAAACCTCTCTTTGGCAGAATCACCGAT
CAAATGAACAACCAATGATTTTCCTTCAAATACTTGGAACGCGAAAATCT
TTACGTaggaaagaaaaaaggaaaagcgTTTTGAGCAAACTTTTTGACTC
TTGAAAGTCTGATTTATTAACGCCTTGATCTGTTTTAATGCTAAACAGGT
AGTAATCATTGTATAAAtaacatttttctaaaattttgtatttttttgtc
atttagAACGCAAATTTCATTGTAGCtagtattttaattatttttttagt
cCATTGTGAGTAAAATCTTGTAGATTCTATATGATTATTGGCCTTCATAA
TGCATGCAATATATATTTGTAATGGAAGTTTTTAACGCTTTAACAGTATA
TTTCTATTTATTCCTTGGAACTCAC Coding sequence (CDS) from alignment at sc0001534:32089..34763 >TCONS_00036912 ID=TCONS_00036912|Name=TCONS_00036912|organism=Clytia hemisphaerica|type=CDS|length=2130bp|location=Sequence derived from alignment at sc0001534:32089..34763 (Clytia hemisphaerica) ATGGCACCGGTAGATGGCTACATCAAAGATTTATCAAATCCAATCTGTTG GAAAATTGCTGAGAAGTTCGATTCTCTTGAGAAACCGAACTGGAAAACCT TGATTAGTAAAATGCCGAAGAATCTTTACGATGAAAAAGCAGTCTTGCGT TTCCATATGGCAATTCTCAAGCCACGGGGAAGTCCAACGTTGGCTTTACT GGAGGACCTTGGTCGTAAGAAAAAAACTGTGGGACAGCTGATTCAATGGT TAAATCAAGTTGGTGATTCAGGAGAACTCATAAGTTTCCTTGAGCGTGGT GATCAAGCTTTAAGAGAACTGGCCCCCACCATTGACCGACAACCCGAGTC GCTGTCATGTGCCGCTGATGACAGTTTTGAGTTATCAGTCGAAGTAAGTG GCCGAGCACCTTTCAAATACCAATGGTTTAAAGGGAATACGGAATTACGA GGATGTGATAAAAGAGCTTTGTTTATCGAGAAAGCCTCGATGCAAAATGG TGGTTTCTACACGTGCCGAGTGGTCAACGAGTTTGATTATATTTATTCAG CATGGTGTAAAGTAGAGGTGGCTGAAATGCCAACCTTCGTCCACCAAAGT AATAGTATTTTTAATACACCAGTCATTACCATGCATCCACGTTCAGCCGT CTGTTATTTTAACCAACCGCTTGAACTTCTTGCCGACGCTGTTGGCGACC CGTCTCCAACCCTCCAATGGTATTTTGAAGACCAGCCACTGGTCGGAGAA TGTAGTCGACATTTGAGAATCGAATCCATGACGCAAGATAAAGAGGGTTT CTACTATTTTGAAGCGTCCAATAAATTTACATCCACTCGTTCTATAAAAG CACAAGTTACTGTTAAGAAGGCGCCTTTACCTCCAAGCTGCCCTCAGTCA CCTGAGAAAAAGACACCTCAAAGTGGCATCAGAGGACCTGAAGATATCAA CACTGAGCACGGCTTTTCCATTCAACCGCCAAGCGCACCAACCGAGAAAA TTGCTCTGGTTATAGGTAACCAGGATTACGTTTACAGTGACGCATTAGGG CATTTAGTTCATCCTGTCAATGATGCTCACGACATCTCAGCTGAACTTCG AAGTTTAAATTTTAAGGTTGTGTCGCTAATTAATCTAAACTTAAAGGACA TGAGGAATGCTGTGAAATTTTTTTGTGGACTGTTAAATTCAGGGACATAT GCTTTGTTCTATTTTGCTGGTCACGGGTTTGAGATTGACGGCGAGAGTTA CATGATGGCACTCGATGCCACCGCTAAATACCGTCCAGAAGAAAACCTCT CCCTGACTGAAGTTATCGCCCCACTAACCGAGAAGAACCCAAAGTTGTCC GTCTTGTTGGTTGATTCATGCCGAACGCAACCGGAACTCTGTCGGAACGA CCCCATCCTTAATAAATCAAACCGGACAGCCTTACAACGAAAAAATGTAA CGATCGGTTATGGTTGTTGCGCTCGAGGTCGCGTCTTGGAGTCGCCTCAA ATGAGGAATGGATACTTCGCTCTTCACCTTCTCGAAAACATgtccaaaaa tgttaaaattgatgacgtcatgtttTTGGTATCAAAAGGAATTCATGAAG ATCAAATTGTTGATCCAGCAACAGGTCGCACACAAGTCGTTTATCGCCAT TCTACTGTTGTCAATGATCTCCGTTTGACGGATGAGATCCAGCGCTCTAA CAAGATTACAGATAACGTGGTGGCATGGCAACAAGCTCATGTTGCTCCTT ATTCACCAGTGGTTGCGCTTGAAAATGATCACGTGATCGTGCAGTTGATT TTCACGCCCGAATTCTCAAATTGTCTCTTGATCCAAAGCAAAGTCATTGA AAAGACGCCTTGTGATTCACCAAGTGTGGTTTTCTTTCTTCCCGAACGCA TCGGAGGTGCAAACGTGGAAACCATATCTCCCGAACGAAAAGAGAAAGGC ATCCGTTTAGAGGATAAGATTGTGCGGATTTCAAACATCGAAAGATTGGA AGGAAATATTGACATTCATTTAGAGATTGAGTACGAATCACAAGGCTTTC AACATCAACAAAGAGCTTATTATTGCATCAAAGAAAAACCTCTCTTTGGC AGAATCACCGATCAAATGAACAACCAATGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
| TCONS_00036912-exon-sc0001534-1491911889:32089..34763 | TCONS_00036912-exon-sc0001534-1491911889:32089..34763 | Clytia hemisphaerica | exon |
| TCONS_00036912-exon-sc0001534-1510915933:32089..34763 | TCONS_00036912-exon-sc0001534-1510915933:32089..34763 | Clytia hemisphaerica | exon |
| TCONS_00036912-exon-sc0001534-1575043694:32089..34763 | TCONS_00036912-exon-sc0001534-1575043694:32089..34763 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
| sc0001534 | supercontig | sc0001534:32089..34763 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
| GO:0004197 | cysteine-type endopeptidase activity |
Vocabulary: Biological Process
| Term | Definition |
| GO:0006508 | proteolysis |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0006508 |
proteolysis |
| molecular_function |
GO:0004197 |
cysteine-type endopeptidase activity |
Blast
BLAST of TCONS_00036912 vs. Swiss-Prot (Human)
Match: MALT1 (Mucosa-associated lymphoid tissue lymphoma translocation protein 1 OS=Homo sapiens GN=MALT1 PE=1 SV=1) HSP 1 Score: 232.261 bits (591), Expect = 3.783e-64 Identity = 183/650 (28.15%), Postives = 305/650 (46.92%), Query Frame = -3
Query: 436 MAILKPRGSPTLALLEDLGRKKKTVGQLIQWLNQVGDSGELISFLERGDQALRELAPTIDRQPESLSCAADDSFELSVEVSGRAPFKYQWFKGNTELRGCDKRALFIEKASMQNGGFYTCRVVNEFDYIYSAWCKVEVAEMP-TFVHQSNSIFNTPV-ITMHPRSAVCYFNQPLELLADAVGDPSPTLQWYFEDQPLVGECSRHLRIESMTQDKEGFYYFEASNKFTSTRSIKAQVTVKKAPLPPSCPQSPEKKTPQSGIRGPEDINTEHGFSIQPPSAPTEKIALVIGNQDYVYSDALGHLVHPVNDAHDISAELRSLNFKVVSLINLNLKDMRNAVKFFCGLLNSGTYALFYFAGHGFEIDGESYMMALDATAKYRPEENLSLTEVIAPLTEKNPKLSVLLVDSCRTQPELCRNDPILNKSNRTALQRKNVTIGYGCCARGRVLE--SPQMRNGYFALHLLENMSKNVKIDDVMFLVSKGIHEDQIVDPATGRTQVVYRHSTVVNDLRLTDEIQRSNKITDNVV---AWQQAHVAPYSPVVALENDHVIVQLIFTPEFSNCLLIQSKVIEKTP----CDSPSVVFFLPERIGGANVETISPERKEKGIRLEDK-------IVRISNIERLEGNIDIHLEIEYESQGFQ 2331
+ +L+P GSP+L LL+ +G K TV +L +L Q + E++ Q L I PES + A +L +G +YQWFK N E+ + L +++ GFY CRV N F + +S W +++V ++P +F + + + + I + P S L L AVG P P QW+ + PL E + + + + +G Y+ N S S K ++ + + C E + G ++ T+ + +K+AL+IGN +Y L P+ D ++++ LR L+FKVVSL++L +MRNAV F LL+ G Y L Y+AGHG+E G S+M+ +DA YR E L + ++ + EK L+V L+D CR + + PIL+ TA N+ GY C E + NG F L + + ++ KI ++ V++ + + + T Q + S++ LTD IQ + +++V W +AH P S + + V +QL F EFSN ++I + ++ K P CD+ F L I + +PE E G L K R+S++++L+ ++ + + Y+ G +
Sbjct: 79 LKVLEPEGSPSLCLLKLMGEKGCTVTELSDFL-QAMEHTEVL-------QLLSPPGIKITVNPESKAVLAGQFVKLCCRATGHPFVQYQWFKMNKEIPNGNTSELIFNAVHVKDAGFYVCRVNNNFTFEFSQWSQLDVCDIPESFQRSVDGVSESKLQICVEPTSQKLMPGSTLVLQCVAVGSPIPHYQWFKNELPLTHETKKLYMVPYVDLEHQGTYWCHVYNDRDSQDSKKVEIIIGRTDEAVECT---EDELNNLGHPDNKEQTTDQPLA-------KDKVALLIGNMNYREHPKLKA---PLVDVYELTNLLRQLDFKVVSLLDLTEYEMRNAVDEFLLLLDKGVYGLLYYAGHGYENFGNSFMVPVDAPNPYRSENCLCVQNILKLMQEKETGLNVFLLDMCRKRNDYDDTIPILDALKVTA----NIVFGYATCQGAEAFEIQHSGLANGIFMKFLKDRLLEDKKITVLLDEVAEDMGKCHL----TKGKQALEIRSSLSEKRALTDPIQGTEYSAESLVRNLQWAKAHELPESMCLKFDCG-VQIQLGFAAEFSNVMIIYTSIVYKPPEIIMCDAYVTDFPLDLDIDPKDANKGTPE--ETGSYLVSKDLPKHCLYTRLSSLQKLKEHLVFTVCLSYQYSGLE 696
The following BLAST results are available for this feature:
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