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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00036910 ID=TCONS_00036910|Name=TCONS_00036910|organism=Clytia hemisphaerica|type=transcript|length=1320bp
AACCCAAAATTCTTTTACTCATACGCTAATCGTTTCTCGAAATCTCAACC
AAAAGTTGGACCCTTAATCGATCCAGACAGTAACAAATTGACTAATGATC
CCCTTTCGATGGCCAATATCCTAAAAAACCAATACAAGTCTGTCTTCACC
CAACCTCTTCAAAACTACAACCTTCATCCACTTGAGTCACAAATACCAAT
ACTTGAAGATATCAATCTGACTATCGAggaatttgtcaaagaaatcaGTA
CACTGTCACCAGCTTCAGCACAATCAGGTCCACTGATTGTTTTCCAGCTA
TTCTTCTGCTAAAAACTAAAGACAACATTGCTCTACCACTTTCATTTATC
TGgagaaatattcttaacaaagGAATCactccaaaacttttaaaaactgg
ACATATATATATCCCCAGTTTACAAAAAAGGGAATCAAGGACTTGCTGAA
AACTATAGACCCATTGCCCTCACATCCCACGTTTCAAAggtctttgaaaa
gattgtacGAGCCAAGATACAAAATTATCTAGAAGAAAACAATCTGTAAA
CAATAATCAACATGGCTTTAGGAAAGGCCGCTCATGTCTTAGTCAATTGC
TTCAACACACCGAAAGACTGATCCATTACCGAGAGAATGGAAACAACATT
GACGTTATCTATTTAGACTTTAGTAAAGCTTTTGATAGAGTAGACCGCAC
CATTTTGTTACACAAGCTTCAGAAAAATGGCATAAACGGTAAACTCCTTG
AATGGACCAGATCCTTTTTGACTCATCGAACAGAGAGAGTTTCAGTAAAC
TCAACCTTGTCCTCAGAAACAGATTTTATTTCAGGTGTGCCACAAGGATC
TGTGCTGGGACCGTTATTGTTTTGAATCATGATTCAAGATATTGATGACA
ACATCCTTCACTCTATTTTGGCATCGTTTGCTGACGACACCCGTTTGATG
AAAGAAATATCCAAACTGGAGCATGTTTATCATCTACAAAATGATCTAGA
CACTGGCTATAAGTGAGCAGAAGACAACAACATGCAGCTGAATGGTCTTT
AAATTTGATCACCTTGCCTACGGGAAAAACGATGCTCTGAAGCAAAGTTC
TCGCTATTTTTCTGACACAGCAACGTTGATCGAAAATATAGACGAAGTTA
AAGACCTTGGAGTCACCCTAGACACTCAGTTGACTTATGAGAAACATATC
CAAGAACAAATtaataaagtaaaaaataagtgCATGGATATACAGCACat
tcaaatcaagaaaaattgaaaccatGTTAACTTCATGTTCTCAACTCTGT
CTCCCTGGAAGCGTTGTCTT Run BLAST on NCBI protein sequence of TCONS_00036910-protein >TCONS_00036910-protein ID=TCONS_00036910-protein|Name=TCONS_00036910-protein|organism=Clytia hemisphaerica|type=polypeptide|length=103bp
NPKFFYSYANRFSKSQPKVGPLIDPDSNKLTNDPLSMANILKNQYKSVFT
QPLQNYNLHPLESQIPILEDINLTIEEFVKEISTLSPASAQSGPLIVFQL
FFC Run BLAST on NCBI transcript from alignment at sc0001534:15494..16813 Legend: exonthree_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00036910 ID=TCONS_00036910|Name=TCONS_00036910|organism=Clytia hemisphaerica|type=transcript|length=1320bp|location=Sequence derived from alignment at sc0001534:15494..16813 (Clytia hemisphaerica)
AAGACAACGCTTCCAGGGAGACAGAGTTGAGAACATGAAGTTAACatggt
ttcaatttttcttgatttgaatGTGCTGTATATCCATGcacttatttttt
actttattaATTTGTTCTTGGATATGTTTCTCATAAGTCAACTGAGTGTC
TAGGGTGACTCCAAGGTCTTTAACTTCGTCTATATTTTCGATCAACGTTG
CTGTGTCAGAAAAATAGCGAGAACTTTGCTTCAGAGCATCGTTTTTCCCG
TAGGCAAGGTGATCAAATTTAAAGACCATTCAGCTGCATGTTGTTGTCTT
CTGCTCACTTATAGCCAGTGTCTAGATCATTTTGTAGATGATAAACATGC
TCCAGTTTGGATATTTCTTTCATCAAACGGGTGTCGTCAGCAAACGATGC
CAAAATAGAGTGAAGGATGTTGTCATCAATATCTTGAATCATGATTCAAA
ACAATAACGGTCCCAGCACAGATCCTTGTGGCACACCTGAAATAAAATCT
GTTTCTGAGGACAAGGTTGAGTTTACTGAAACTCTCTCTGTTCGATGAGT
CAAAAAGGATCTGGTCCATTCAAGGAGTTTACCGTTTATGCCATTTTTCT
GAAGCTTGTGTAACAAAATGGTGCGGTCTACTCTATCAAAAGCTTTACTA
AAGTCTAAATAGATAACGTCAATGTTGTTTCCATTCTCTCGGTAATGGAT
CAGTCTTTCGGTGTGTTGAAGCAATTGACTAAGACATGAGCGGCCTTTCC
TAAAGCCATGTTGATTATTGTTTACAGATTGTTTTCTTCTAGATAATTTT
GTATCTTGGCTCgtacaatcttttcaaagaccTTTGAAACGTGGGATGTG
AGGGCAATGGGTCTATAGTTTTCAGCAAGTCCTTGATTCCCTTTTTTGTA
AACTGGGGATATATATATGTccagtttttaaaagttttggagtGATTCct
ttgttaagaatatttctcCAGATAAATGAAAGTGGTAGAGCAATGTTGTC
TTTAGTTTTTAGCAGAAGAATAGCTGGAAAACAATCAGTGGACCTGATTG
TGCTGAAGCTGGTGACAGTGTACtgatttctttgacaaattccTCGATAG
TCAGATTGATATCTTCAAGTATTGGTATTTGTGACTCAAGTGGATGAAGG
TTGTAGTTTTGAAGAGGTTGGGTGAAGACAGACTTGTATTGGTTTTTTAG
GATATTGGCCATCGAAAGGGGATCATTAGTCAATTTGTTACTGTCTGGAT
CGATTAAGGGTCCAACTTTTGGTTGAGATTTCGAGAAACGATTAGCGTAT
GAGTAAAAGAATTTTGGGTT Coding sequence (CDS) from alignment at sc0001534:15494..16813 >TCONS_00036910 ID=TCONS_00036910|Name=TCONS_00036910|organism=Clytia hemisphaerica|type=CDS|length=312bp|location=Sequence derived from alignment at sc0001534:15494..16813 (Clytia hemisphaerica)
TTAGCAGAAGAATAGCTGGAAAACAATCAGTGGACCTGATTGTGCTGAAG
CTGGTGACAGTGTACtgatttctttgacaaattccTCGATAGTCAGATTG
ATATCTTCAAGTATTGGTATTTGTGACTCAAGTGGATGAAGGTTGTAGTT
TTGAAGAGGTTGGGTGAAGACAGACTTGTATTGGTTTTTTAGGATATTGG
CCATCGAAAGGGGATCATTAGTCAATTTGTTACTGTCTGGATCGATTAAG
GGTCCAACTTTTGGTTGAGATTTCGAGAAACGATTAGCGTATGAGTAAAA
GAATTTTGGGTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00036910-exon-sc0001534-1491911889:15494..16813 | TCONS_00036910-exon-sc0001534-1491911889:15494..16813 | Clytia hemisphaerica | exon |
| TCONS_00036910-exon-sc0001534-1510915933:15494..16813 | TCONS_00036910-exon-sc0001534-1510915933:15494..16813 | Clytia hemisphaerica | exon |
| TCONS_00036910-exon-sc0001534-1575043694:15494..16813 | TCONS_00036910-exon-sc0001534-1575043694:15494..16813 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001534 | supercontig | sc0001534:15494..16813 . |
Blast
The following BLAST results are available for this feature:
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