TCONS_00036908 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00036908
Unique Name	TCONS_00036908
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1235

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at sc0001534:42305..48503-

transcript sequence

>TCONS_00036908 ID=TCONS_00036908|Name=TCONS_00036908|organism=Clytia hemisphaerica|type=transcript|length=1235bp
gaaaaaagttgaatttaaacaaatacttttatgaaaaaatggcttcaaCA
AGAAGATggtttcatcaaaatattgGTGGACTGGAAGCTGAGAAGTTGTT
GCTTGCTTGTGGACGGGATGGCAGCTTCTTATGTAGACCAAGCACCAACA
AAGTTGACTACACATTATCTGTAAGGAAGAATGGTGCAGTCACTCATATT
AAAGTCTTAAACAGAGGTGATAATTTTGACTTGGGCTTTGGTGGTGATCC
TTTCCCAACGTTGTCAAGTTTGGTGACATATTACATGGAGAATGAGTTAA
GAGAGAAGAGTGGAGAGTTGATTGAACTTCTCTATCCTATGAATTGTAAA
GATCCAACAACCAGAAGATGGTTCCATGGTCACATTTCTGGTACAGATTC
TGAAAGGCTGATGTTAGATAAAGGAAAAAGTGGCAGCTTCATGGTTCGAG
AAAGTGTCACTAATCCGGGAAATTTTGTTGTAACTGCAAGAACTGAGGAT
ATCATAAAGCACGTCATGATTCGTAACATTGATGGTTCTTTTGACTTCGG
CGGTGGCACAAAGTTTGGTACTTTGACCGAACTGGTGGATCATTACAGAG
AAAATCCAATGGTCGAGAAAAATGGTGGAACCGTATTGCATCTCAAACAT
CCCATGAATTCTACAAAATTTACGGCAGCTTCAATTAAAGACAGAGTAAC
AGAACTTCAAAAAGAAAGTGAGATTTGCTCAGGGAAAGACGGATTCTGGG
AAGAATTTGAGCAATTACAACAACAAGAATATAAACACAAATACACCAAG
AAGGTCGGTTTGACGTCATATAACAAACATAAAAATGTCTTCAGGAACAT
CGTACCTTTTGATCACACGAGGGTGGTTTTGACAGATGGTGACCCTGATG
ATCCGAAACAAGACTACATCAATGCTTCTTATATCGACGGTGAGTTTTCT
CACGAATACATTGCAACCCAAGCGTGTTTAGAGGAAACGATAGTCGACTT
TTGGCGGATGGTATACAGCGAAAATACGCATGTTATTTTGATGGGAATGA
AATTGATCGAGAAAGGAAAAAAAAGATGTGCTCAATACTGGCCAGATTGT
GACCACTCCATGAAAGTTGGTCAATTCGATATCGCTTGTAATAAAGAAAC
GGAGACCCAAGAATTTGTCCTCAGAGAGTTCGAACTCAGAAATAATGACG
AGcCTGAGAAGGGAACGCGGACGGTGTATCACTAT

Run BLAST on NCBI

transcript from alignment at sc0001534:42305..48503-

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00036908 ID=TCONS_00036908|Name=TCONS_00036908|organism=Clytia hemisphaerica|type=transcript|length=6199bp|location=Sequence derived from alignment at sc0001534:42305..48503- (Clytia hemisphaerica)
GAAAAAAGTTGAATTTAAACAAATACTTTTATGAAAAAATGGCTTCAACA
AGAAGGTGAGTAACTTCAGGAAAAATTTATCACTCATTAGTTTTATTACA
CAAACAGATAAAGTAATTTTTTAACTAAGTTAACTGATTTTAGTTCAGCA
TTCCTTAGAGTGTGATGCTCATTGGTGGGGGATGCTAAGAATAAATACTT
TTTATTTAAATTCAATGTGTCTCTTGTTTTCTAAACTTGCAGATGGTTTC
ATCAAAATATTGGTGGACTGGAAGCTGAGAAGTTGTTGCTTGCTTGTGGA
CGGGATGGCAGCTTCTTATGTAGACCAAGCACCAACAAAGTTGACTACAC
ATTATCTGTAAGGTGAGGATATCCTATCATCACTGCGAAGACTAGGTGCA
AATTCTTTTACTTGGGTCAAGCTAATATTTTCTAAATATAACATTAATAT
CATCAAGTCTCATCATAATCTTTCATCAAGTTAAAACTGCTTTCATATAC
ATAGGTAAGGGACAGTTACTTTGACCAACTTACTTTGTTTTTATTTCATC
TAGTATTCATTTTTTCCCTACAATTTTCAGGAAGAATGGTGCAGTCACTC
ATATTAAAGTCTTAAACAGAGGTGATAATTTTGACTTGGGCTTTGGTGGT
GATCCTTTCCCAACGTTGTCAAGTTTGGTGACATATTACATGGAGAATGA
GTTAAGAGAGAAGAGTGGAGAGTTGATTGAACTTCTCTATCCTATGAATT
GTAAAGATCCAACAACCAGAAGGTTTCCTTTTTAATAATATTCTACACTT
TACATTAATTTCCAGCTTTTTTTCGTTGTTTTGTTCGACCTCATAATATA
AAAATCGTTTGATGAGAAAGTGAAATATTTGAAGGATTATATGAGATATC
CCCATCAAGAAAGTGATAGATTTTGATGAGATAAATGATAAATGATAAAT
GAAATCATATTTTTCTTATTCTTGTCTACAGATGGTTCCATGGTCACATT
TCTGGTACAGATTCTGAAAGGCTGATGTTAGATAAAGGAAAAAGTGGCAG
CTTCATGGTTCGAGAAAGTGTCACTAATCCGGGAAATTTTGTTGTAACTG
CAAGGTGACTAAATATTATTCTTTTTTCAAGCTATTTTTCATACTCTTTG
ATTTGATTTTCTCTTATTTGTTATTGTTGCTTACAATCAAAAGCCAGTAG
TTCATTAGTGCTTCTAATACGTTCTAATGGAAGATTTCAAAGCAAATTTT
TCTCTTCAGAACTGAGGATATCATAAAGCACGTCATGATTCGTAACATTG
ATGGTTCTTTTGACTTCGGCGGTGGCACAAAGTTTGGTACTTTGACCGAA
CTGGTGGATCATTACAGAGAAAATCCAATGGTCGAGAAAAATGGTGGAAC
CGTATTGCATCTCAAACATGTATGTTTTGATCCATATTATTTCAAACCAC
AGCTAATTTTTCTAGCATGAATTGTCAAATTTTAAACGCAATTTCTTCAT
TGCTTGGAGAGGATGTTTTCCAAGGGGGAAAACAAGAGAATATCTTTCCG
AAATTCAGCTTTGGAAATTTTGTGATGCATGTTTACCATTTTTCCTTTTA
GCCCATGAATTCTACAAAATTTACGGCAGCTTCAATTAAAGACAGAGTAA
CAGAACTTCAAAAAGAAAGTGAGATTTGCTCAGGGAAAGACGGATTCTGG
GAAGAATTTGAGGTAATGATACATATCTTAAAGGGAAGAGAGAAATTTTC
TCTCTCGCTGTTTCTCTCTCGTGCAGTAATTTTTATTTTCTGATTTGAAG
TCAGTTTCTATGGTTCGTACAAAATTGTATAAGAGTTTGTGTCCATCATG
TCATTTTTGCGAACTTTCTCTTCTCTATCGAATATCCTGCTAAAATGGAT
CTAAGATTATATAACCAAGTTTGAATTTCGGGTTTTTGAGATTCCAGTTT
GGCCGTTTTTACCGAAATGTTTTTTGGACCTACCCCGGTGGGATTGAGGT
CCTATAAATTAACCTGCGTGTTCGTTCATTCATCCGTTCGTTCGTCTGTT
ACCAACTTTTCTCAGGATTGAATCATAGGAATCTTTTGATTTTTGGTACA
AAGGTGCAAAATGGTGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTCTGTTACCAACTTTTCTCA
GGATTGAATCATAGGAATCTTTTGATTTTTGGTACAAAGGTGCAAAATGG
TGGTGGCCAAAATGTGACGGAGCCCGATTTACGAGAAAAAATTCTTTTGG
GCATTTGGGCCAAAAAACGGCTAAAAAACAGGTTTTTTGAACTTTGTGAA
AAATTGGATCATTAATTTTTTCTGATTTTTTGCATGAAAGTAGGGTACCA
TCATAGGTAAAAGATTTTGTTGGCGCAAAAAACGCATTTTTATCTATAAG
AATCACTATTAATAAGCATACATCAATGTTCTTAGTCAAATTACTCAATT
TTGTTATAACATAGATGTTTTTTTTGCTCATGAGGGCTTACTTTTGAAGA
ATATGTGTGTTTAGACATGAAATTTTGGTTGCTGGGCGTGTTTTTATAGA
AAAACTGGCCAAATTCGATATTTTTTTTATAAGAACATTATAAATTACTT
AGGTATTAGCTTTTCTCGAGATTGGCTCTTTCATTCTTTCTGATTTTTTG
CACAAAGATGCATAACTATAAACCCTCAAATGTGACTCAGTCACACGTTT
TTTGAAAAAAAAGTTTTGAGGTAAATTTAGGGTTTTTTGGACTTTGTGAA
ATATTGGATCATTGTTTTTTTCTGACTTTTTGCATGAAAGTAGGTAAAAG
ATGGCTCAAGCAGATTTTTNTCAGGGAAAGACGGATTCTGGGAAGAATTT
GAGGTAATGATACATATCTTAAAGGGAAGAGAGAAATTTTCTCTCTCGCT
GTTTCTCTCTCTTGCAGTAATTTTTATTTTCTGATTTGAAGTCAGTTTCT
ATGGTTCGTACAAAATTGTGTAAGAGTTTGTGTCCATCATGTCATATTTG
CGAACTTTCTCTTCTCTATCGAAGATCCTGCTAAAATGGATCTAAGATTA
TATTATAACCAAGTTTGAATTTCGGGTTTTTGAGATTCCAGTTTGGCCGT
TTTTACCGAAATGTTTTTTGGACCTACCCCGGTGGGATTGAGGTCCTATA
AATTAACCTGCGTGTTCGTTCATTCATCCGTTCGTTCGTCTGTTACCAAC
TTTTCTCAGGATTGAATCATAGGAATCTTTTGATTTTTGGTACAAAGGTG
CAAAATGGTGGTGGCCAAAATGTGACGGAGCCCGATTTACGAGAAAAAAT
TCTTTTGGACAAATTTGGGCCAAAAAACGGCTAAAAAACAGGTTTTTTGA
ACTTTGTCAAAAATTGGATCATTAATTTTTTCTGATTTTTTGCATGAAAG
TAGGGTACCATCATAGGTAAAAGATTTTGTTGGCGCAAAAAACGCATTTT
TATCTATAAGAATCACTATTAATAAGCATACATCAATGTTCTTAGTCAAA
TTACTCAATTTTGTTATAAGATAGATGTTTTTTTTGCTCATGAGGGCTTA
CTTTTGAAGAATATGTGTTTAGACATGAAATTTTGGTTGCTGGGCGTGTT
TTTATAGAAAAACTGGCCAAATTCGACATTTTTTTTATAAGAACATTATA
AATTACTTAGGTATTAGCTTTTCTCGAGATTGGCTCTTTCATTCTTTATG
ATTTTTTGCACAAAGATGCATAACTATAAACCCTCAAATGTGACTCAGTC
ACACGTTTTTTGAAAAAAAAGTTTTGAGGTAAATTTCAGCTAAAAAACGA
CTAAAAANTTGTGTTCTGAATGATTGTTTAATGGTCACACTCACGTAGAT
ATCAATTATATATGTGTTAAATGCATAACCAGGTAGGTCCATAAAAGTAT
CACTTGTTTCTTCTTACAGCAATTACAACAACAAGAATATAAACACAAAT
ACACCAAGAAGGTCGGTTTGACGTCATATAACAAACATAAAAATGTCTTC
AGGAACATCGTACCTTGTAAGTAACCTACACTTATCAGTGAAAACCAACC
CTGTAGCCTTGGAAGTTATACGACGAAAGTTGGTTAATTAGACGAAAGTT
TTGTTAATTAGACAAAATCGACCTATGCTTGAGTATTTTTGTCACGATTC
ATACAAATATCTTCTCACCTGCATTGGACTGTACTAAAAATTTTGGACTA
ACCATTGCCCACTCTTTGAAAAGTTTTTTCAAAAATTTGACTCACATGAT
GCGATGTCTCACATCGAGTAGTGGAACCATTATAGCGATACTCACTTTTT
TTTAACTCCGATCAGATTTAAATTATCTGCAGTTGTGATTGTCCAGAGTT
TCTGAAAAGGAACCCTCTGTCTAGTGTAGACTAGATTCTAAATGACTTAG
GTTAGGACTTCGAGTTTGTTGAAATCTCCTGACTTAAAAGGATAGATACA
TAAAACTTGCTAAAGTAGTTCGTTTATGGCACTAGATCCTAGATTTATTG
ATCTTTTGAAGCAGCTAGTAATTTGTCAAGTAACTTTTTTCATCGTTTTT
GTAGTTGATCACACGAGGGTGGTTTTGACAGATGGTGACCCTGATGATCC
GAAACAAGACTACATCAATGCTTCTTATATCGACGTGAGTATCGCTCATC
GTTCTAATTATTTTCAAGTGATTTGTGAGAAAGTCGCTAAGAGAAGTCTT
AAAAATCTTTTCGTCATATTTTTTCTCGTTCTTTTGAAAATATTTGAATT
CCTCAAGGGAAATAACCTTGATAAGAAGTGCTCTCGGTAGATTTTGAGAA
AACTTGAAAAAATTTTATATTAAATTTAAGTCGTTGTATTATCTTGTTGG
TACTATATATGGGACTTCGCCAAAATTAGCTGTCCTAAAACAAAGTTACA
CTTGCGCTTACACTATGATGACAATAAAATTACAATTGCAATTGCTATTT
TCAATCACACGTCAATTCTATGTTTTCATCTTTCAGGGTGAGTTTTCTCA
CGAATACATTGCAACCCAAGCGTGTTTAGAGGAAACGATAGTCGACTTTT
GGCGGATGGTATACAGCGAAAATACGCATGTTATTTTGATGGGAATGAAA
TTGATCGAGAAAGGAAAAGTATGGCTGATTTGTTGTTGAGCATTTTTACG
CCTTGAAGAGTCTTGAGGTCAGGGGTCAAGCTGGAGTTTTTACAAGTTCT
TTGATGACTCTGTTGGTCGTTAAATGTTGAGACAAACGATTTTATTACTT
TTTCTAAAGAACGCCTCATCCCGTCATAACCAATCAGTTAAGCATCTTGT
AAAAACTCAAAGGCATCTCGAGAACAGAAGTAGCTAAAAAACAGCTCTTT
CACATGCGCATTTGAAGGAGGCATCCTCATTAATTATAAACATCTGTTAA
CAATTGTACCCTCGGTTTCAATCCAAAAGCAAAATACGATTTAGCAAAGT
TCAATATTCGGTCAATTCCGTATAAATTAAGAAAGAAGTTCATTTAATAT
CATCTTCCTTGTAGAAAAGATGTGCTCAATACTGGCCAGATTGTGACCAC
TCCATGAAAGTTGGTCAATTCGATATCGCTTGTAATAAAGAAACGGAGAC
CCAAGAATTTGTCCTCAGAGAGTTCGAACTCAGAAATAATGACGAGGTAA
ATGAGCGTAAAGCTTTAGCATGTATAACCACTTTTAGAGACAAGATGTTG
TAAATGATACGTATGGGTGTAAGTCTAGTAACTCGCGAAGCTTCATTTAA
GAATCTCACAAAAACACTTCTGCTTCTGAAACCTCAGCCAGGGTCTCATA
GTCATAGTATAATCCTTTATCAGCCTAGGGTAGCCCTGGCTCAGAGTCCC
AAGCCACCTAAATATTCATGCTTTCAAAATTTTCACTAAAGCTCTTCATT
AAGGAGTGCTTTTCGGATTTTAGACTTTAGACCATGTTTCGGAGCAAAAA
AAAACGTTGCAGTCCCGTTATCCAATGAAAATAATGGAGCGAAACCATTT
CGATATGTTTTGCTCTGTAACGTCTTCTTTTTTGACGTTTTCAATTTTGA
CGTTCACGCAGCTTTCGAAGACCCCTATCAGTAATTTGCGTTTCCCTCTC
ACTTTTCTTTTGTCAGCCTGAGAAGGGAACGCGGACGGTGTATCACTAT

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_021800	XLOC_021800	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0001534	supercontig	sc0001534:42305..48503 -

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.9428	2.86513	2.49705	0.734896	6.28677	4.71578	6.49747	2.73317	1.79297	1.83844	0.700719	1.60339	1.29711e-06	0	9.979e-05	0.695851	4.27036e-09	0.00250852	2.33398	3.17285	0.700147	0.494398	0.000199443	0.844768	1.26859	5.12018	2.5636	0.785085	1.34239	0.897222

Blast

[Close]

BLAST of TCONS_00036908 vs. Swiss-Prot (Human)
Match: PTN11 (Tyrosine-protein phosphatase non-receptor type 11 OS=Homo sapiens GN=PTPN11 PE=1 SV=2)

HSP 1 Score: 403.675 bits (1036), Expect = 5.479e-135
Identity = 214/404 (52.97%), Postives = 283/404 (70.05%), Query Frame = 3

Query:   45 STRRWFHQNIGGLEAEKLLLACGRDGSFLCRPS-TNKVDYTLSVRKNGAVTHIKVLNRGDNFDLGFGGDPFPTLSSLVTYYMEN--ELREKSGELIELLYPMNCKDPTTRRWFHGHISGTDSERLMLDKGKSGSFMVRESVTNPGNFVVTARTED----------IIKHVMIRNIDGSFDFGGGTKFGTLTELVDHYRENPMVEKNGGTVLHLKHPMNSTKFTAASIKDRVTELQKESEICSG-KDGFWXXXXXXXXXXYKHKYTKKVGLTSYNKHKNVFRNIVPFDHTRVVLTDGDPDDPKQDYINASYIDGEFS---------HEYIATQACLEETIVDFWRMVYSENTHVILMGMKLIEKGKKRCAQYWPDCDHSMKVGQFDIACNKETETQEFVLREFEL 1187
            ++RRWFH NI G+EAE LLL  G DGSFL RPS +N  D+TLSVR+NGAVTHIK+ N GD +DL +GG+ F TL+ LV YYME+  +L+EK+G++IEL YP+NC DPT+ RWFHGH+SG ++E+L+ +KGK GSF+VRES ++PG+FV++ RT D           + HVMIR  +  +D GGG +F +LT+LV+HY++NPMVE   GTVL LK P+N+T+  AA I+ RV EL K +E     K GFWEEFE LQQQE K  Y++K G    NK+KN ++NI+PFDHTRVVL DGDP++P  DYINA+ I  EF            YIATQ CL+ T+ DFWRMV+ EN+ VI+M  K +E+GK +C +YWPD     + G   +   KE+   ++ LRE +L
Sbjct:    2 TSRRWFHPNITGVEAENLLLTRGVDGSFLARPSKSNPGDFTLSVRRNGAVTHIKIQNTGDYYDL-YGGEKFATLAELVQYYMEHHGQLKEKNGDVIELKYPLNCADPTSERWFHGHLSGKEAEKLLTEKGKHGSFLVRESQSHPGDFVLSVRTGDDKGESNDGKSKVTHVMIRCQELKYDVGGGERFDSLTDLVEHYKKNPMVE-TLGTVLQLKQPLNTTRINAAEIESRVRELSKLAETTDKVKQGFWEEFETLQQQECKLLYSRKEGQRQENKNKNRYKNILPFDHTRVVLHDGDPNEPVSDYINANIIMPEFETKCNNSKPKKSYIATQGCLQNTVNDFWRMVFQENSRVIVMTTKEVERGKSKCVKYWPDEYALKEYGVMRVRNVKESAAHDYTLRELKL 403

The following BLAST results are available for this feature:

BLAST of TCONS_00036908 vs. Swiss-Prot (Human)

BLAST of TCONS_00036908 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
PTN11	5.479e-135	52.97	Tyrosine-protein phosphatase non-receptor type 11 ...	[more]

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TCONS_00036908 (transcript) - C. hemisphaerica