TCONS_00036907 (transcript) - C. hemisphaerica

Overview
NameTCONS_00036907
Unique NameTCONS_00036907
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length506

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00036907 ID=TCONS_00036907|Name=TCONS_00036907|organism=Clytia hemisphaerica|type=transcript|length=506bp
CAGGGAAAGACGGATTCTGGGAAGAATTTGAGCAATTACAACAACAAGAA
TATAAACACAAATACACCAAGAAGGTCGGTTTGACGTCATATAACAAACA
TAAAAATGTCTTCAGGAACATCGTACCTTTTGATCACACGAGGGTGGTTT
TGACAGATGGTGACCCTGATGATCCGAAACAAGACTACATCAATGCTTCT
TATATCGACGGTGAGTTTTCTCACGAATACATTGCAACCCAAGCGTGTTT
AGAGGAAACGATAGTCGACTTTTGGCGGATGGTATACAGCGAAAATACGC
ATGTTATTTTGATGGGAATGAAATTGATCGAGAAAGGAAAAAAAAGATGT
GCTCAATACTGGCCAGATTGTGACCACTCCATGAAAGTTGGTCAATTCGA
TATCGCTTGTAATAAAGAAACGGAGACCCAAGAATTTGTCCTCAGAGAGT
TCGAACTCAGAAATAATGACGAGcCTGAGAAGGGAACGCGGACGGTGTAT
CACTAT
Run BLAST on NCBI

transcript from alignment at sc0001534:42305..45632-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00036907 ID=TCONS_00036907|Name=TCONS_00036907|organism=Clytia hemisphaerica|type=transcript|length=3328bp|location=Sequence derived from alignment at sc0001534:42305..45632- (Clytia hemisphaerica)
CAGGGAAAGACGGATTCTGGGAAGAATTTGAGGTAATGATACATATCTTA
AAGGGAAGAGAGAAATTTTCTCTCTCGCTGTTTCTCTCTCTTGCAGTAAT
TTTTATTTTCTGATTTGAAGTCAGTTTCTATGGTTCGTACAAAATTGTGT
AAGAGTTTGTGTCCATCATGTCATATTTGCGAACTTTCTCTTCTCTATCG
AAGATCCTGCTAAAATGGATCTAAGATTATATTATAACCAAGTTTGAATT
TCGGGTTTTTGAGATTCCAGTTTGGCCGTTTTTACCGAAATGTTTTTTGG
ACCTACCCCGGTGGGATTGAGGTCCTATAAATTAACCTGCGTGTTCGTTC
ATTCATCCGTTCGTTCGTCTGTTACCAACTTTTCTCAGGATTGAATCATA
GGAATCTTTTGATTTTTGGTACAAAGGTGCAAAATGGTGGTGGCCAAAAT
GTGACGGAGCCCGATTTACGAGAAAAAATTCTTTTGGACAAATTTGGGCC
AAAAAACGGCTAAAAAACAGGTTTTTTGAACTTTGTCAAAAATTGGATCA
TTAATTTTTTCTGATTTTTTGCATGAAAGTAGGGTACCATCATAGGTAAA
AGATTTTGTTGGCGCAAAAAACGCATTTTTATCTATAAGAATCACTATTA
ATAAGCATACATCAATGTTCTTAGTCAAATTACTCAATTTTGTTATAAGA
TAGATGTTTTTTTTGCTCATGAGGGCTTACTTTTGAAGAATATGTGTTTA
GACATGAAATTTTGGTTGCTGGGCGTGTTTTTATAGAAAAACTGGCCAAA
TTCGACATTTTTTTTATAAGAACATTATAAATTACTTAGGTATTAGCTTT
TCTCGAGATTGGCTCTTTCATTCTTTATGATTTTTTGCACAAAGATGCAT
AACTATAAACCCTCAAATGTGACTCAGTCACACGTTTTTTGAAAAAAAAG
TTTTGAGGTAAATTTCAGCTAAAAAACGACTAAAAANTTGTGTTCTGAAT
GATTGTTTAATGGTCACACTCACGTAGATATCAATTATATATGTGTTAAA
TGCATAACCAGGTAGGTCCATAAAAGTATCACTTGTTTCTTCTTACAGCA
ATTACAACAACAAGAATATAAACACAAATACACCAAGAAGGTCGGTTTGA
CGTCATATAACAAACATAAAAATGTCTTCAGGAACATCGTACCTTGTAAG
TAACCTACACTTATCAGTGAAAACCAACCCTGTAGCCTTGGAAGTTATAC
GACGAAAGTTGGTTAATTAGACGAAAGTTTTGTTAATTAGACAAAATCGA
CCTATGCTTGAGTATTTTTGTCACGATTCATACAAATATCTTCTCACCTG
CATTGGACTGTACTAAAAATTTTGGACTAACCATTGCCCACTCTTTGAAA
AGTTTTTTCAAAAATTTGACTCACATGATGCGATGTCTCACATCGAGTAG
TGGAACCATTATAGCGATACTCACTTTTTTTTAACTCCGATCAGATTTAA
ATTATCTGCAGTTGTGATTGTCCAGAGTTTCTGAAAAGGAACCCTCTGTC
TAGTGTAGACTAGATTCTAAATGACTTAGGTTAGGACTTCGAGTTTGTTG
AAATCTCCTGACTTAAAAGGATAGATACATAAAACTTGCTAAAGTAGTTC
GTTTATGGCACTAGATCCTAGATTTATTGATCTTTTGAAGCAGCTAGTAA
TTTGTCAAGTAACTTTTTTCATCGTTTTTGTAGTTGATCACACGAGGGTG
GTTTTGACAGATGGTGACCCTGATGATCCGAAACAAGACTACATCAATGC
TTCTTATATCGACGTGAGTATCGCTCATCGTTCTAATTATTTTCAAGTGA
TTTGTGAGAAAGTCGCTAAGAGAAGTCTTAAAAATCTTTTCGTCATATTT
TTTCTCGTTCTTTTGAAAATATTTGAATTCCTCAAGGGAAATAACCTTGA
TAAGAAGTGCTCTCGGTAGATTTTGAGAAAACTTGAAAAAATTTTATATT
AAATTTAAGTCGTTGTATTATCTTGTTGGTACTATATATGGGACTTCGCC
AAAATTAGCTGTCCTAAAACAAAGTTACACTTGCGCTTACACTATGATGA
CAATAAAATTACAATTGCAATTGCTATTTTCAATCACACGTCAATTCTAT
GTTTTCATCTTTCAGGGTGAGTTTTCTCACGAATACATTGCAACCCAAGC
GTGTTTAGAGGAAACGATAGTCGACTTTTGGCGGATGGTATACAGCGAAA
ATACGCATGTTATTTTGATGGGAATGAAATTGATCGAGAAAGGAAAAGTA
TGGCTGATTTGTTGTTGAGCATTTTTACGCCTTGAAGAGTCTTGAGGTCA
GGGGTCAAGCTGGAGTTTTTACAAGTTCTTTGATGACTCTGTTGGTCGTT
AAATGTTGAGACAAACGATTTTATTACTTTTTCTAAAGAACGCCTCATCC
CGTCATAACCAATCAGTTAAGCATCTTGTAAAAACTCAAAGGCATCTCGA
GAACAGAAGTAGCTAAAAAACAGCTCTTTCACATGCGCATTTGAAGGAGG
CATCCTCATTAATTATAAACATCTGTTAACAATTGTACCCTCGGTTTCAA
TCCAAAAGCAAAATACGATTTAGCAAAGTTCAATATTCGGTCAATTCCGT
ATAAATTAAGAAAGAAGTTCATTTAATATCATCTTCCTTGTAGAAAAGAT
GTGCTCAATACTGGCCAGATTGTGACCACTCCATGAAAGTTGGTCAATTC
GATATCGCTTGTAATAAAGAAACGGAGACCCAAGAATTTGTCCTCAGAGA
GTTCGAACTCAGAAATAATGACGAGGTAAATGAGCGTAAAGCTTTAGCAT
GTATAACCACTTTTAGAGACAAGATGTTGTAAATGATACGTATGGGTGTA
AGTCTAGTAACTCGCGAAGCTTCATTTAAGAATCTCACAAAAACACTTCT
GCTTCTGAAACCTCAGCCAGGGTCTCATAGTCATAGTATAATCCTTTATC
AGCCTAGGGTAGCCCTGGCTCAGAGTCCCAAGCCACCTAAATATTCATGC
TTTCAAAATTTTCACTAAAGCTCTTCATTAAGGAGTGCTTTTCGGATTTT
AGACTTTAGACCATGTTTCGGAGCAAAAAAAAACGTTGCAGTCCCGTTAT
CCAATGAAAATAATGGAGCGAAACCATTTCGATATGTTTTGCTCTGTAAC
GTCTTCTTTTTTGACGTTTTCAATTTTGACGTTCACGCAGCTTTCGAAGA
CCCCTATCAGTAATTTGCGTTTCCCTCTCACTTTTCTTTTGTCAGCCTGA
GAAGGGAACGCGGACGGTGTATCACTAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_021800XLOC_021800Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00036907-exon-sc0001534-1575043694:45601..45632TCONS_00036907-exon-sc0001534-1575043694:45601..45632Clytia hemisphaericaexon
TCONS_00036907-exon-sc0001534-1575043694:44438..44534TCONS_00036907-exon-sc0001534-1575043694:44438..44534Clytia hemisphaericaexon
TCONS_00036907-exon-sc0001534-1575043694:43820..43899TCONS_00036907-exon-sc0001534-1575043694:43820..43899Clytia hemisphaericaexon
TCONS_00036907-exon-sc0001534-1575043694:43336..43467TCONS_00036907-exon-sc0001534-1575043694:43336..43467Clytia hemisphaericaexon
TCONS_00036907-exon-sc0001534-1575043694:42808..42939TCONS_00036907-exon-sc0001534-1575043694:42808..42939Clytia hemisphaericaexon
TCONS_00036907-exon-sc0001534-1575043694:42305..42337TCONS_00036907-exon-sc0001534-1575043694:42305..42337Clytia hemisphaericaexon
TCONS_00036907-exon-sc0001534-1510915933:45601..45632TCONS_00036907-exon-sc0001534-1510915933:45601..45632Clytia hemisphaericaexon
TCONS_00036907-exon-sc0001534-1510915933:44438..44534TCONS_00036907-exon-sc0001534-1510915933:44438..44534Clytia hemisphaericaexon
TCONS_00036907-exon-sc0001534-1510915933:43820..43899TCONS_00036907-exon-sc0001534-1510915933:43820..43899Clytia hemisphaericaexon
TCONS_00036907-exon-sc0001534-1510915933:43336..43467TCONS_00036907-exon-sc0001534-1510915933:43336..43467Clytia hemisphaericaexon
TCONS_00036907-exon-sc0001534-1510915933:42808..42939TCONS_00036907-exon-sc0001534-1510915933:42808..42939Clytia hemisphaericaexon
TCONS_00036907-exon-sc0001534-1510915933:42305..42337TCONS_00036907-exon-sc0001534-1510915933:42305..42337Clytia hemisphaericaexon
TCONS_00036907-exon-sc0001534-1491911889:45601..45632TCONS_00036907-exon-sc0001534-1491911889:45601..45632Clytia hemisphaericaexon
TCONS_00036907-exon-sc0001534-1491911889:44438..44534TCONS_00036907-exon-sc0001534-1491911889:44438..44534Clytia hemisphaericaexon
TCONS_00036907-exon-sc0001534-1491911889:43820..43899TCONS_00036907-exon-sc0001534-1491911889:43820..43899Clytia hemisphaericaexon
TCONS_00036907-exon-sc0001534-1491911889:43336..43467TCONS_00036907-exon-sc0001534-1491911889:43336..43467Clytia hemisphaericaexon
TCONS_00036907-exon-sc0001534-1491911889:42808..42939TCONS_00036907-exon-sc0001534-1491911889:42808..42939Clytia hemisphaericaexon
TCONS_00036907-exon-sc0001534-1491911889:42305..42337TCONS_00036907-exon-sc0001534-1491911889:42305..42337Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001534supercontigsc0001534:42305..45632 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	3.88314e-07	0	0	0	0	0	0.363787	0	0	0	0.0102291	0	0	1.83286	0	0	3.40121e-05	0	1.5271	0	0	1.50056	0	0	3.99223e-09	0	1.76281	0
Blast
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BLAST of TCONS_00036907 vs. Swiss-Prot (Human)
Match: PTN11 (Tyrosine-protein phosphatase non-receptor type 11 OS=Homo sapiens GN=PTPN11 PE=1 SV=2)

HSP 1 Score: 142.51 bits (358), Expect = 1.006e-39
Identity = 80/160 (50.00%), Postives = 104/160 (65.00%), Query Frame = 3 
Query:    6 KDGFWXXXXXXXXXXYKHKYTKKVGLTSYNKHKNVFRNIVPFDHTRVVLTDGDPDDPKQDYINASYIDGEFS---------HEYIATQACLEETIVDFWRMVYSENTHVILMGMKLIEKGKKRCAQYWPDCDHSMKVGQFDIACNKETETQEFVLREFEL 458
            K GFWEEFE LQQQE K  Y++K G    NK+KN ++NI+PFDHTRVVL DGDP++P  DYINA+ I  EF            YIATQ CL+ T+ DFWRMV+ EN+ VI+M  K +E+GK +C +YWPD     + G   +   KE+   ++ LRE +L
Sbjct:  244 KQGFWEEFETLQQQECKLLYSRKEGQRQENKNKNRYKNILPFDHTRVVLHDGDPNEPVSDYINANIIMPEFETKCNNSKPKKSYIATQGCLQNTVNDFWRMVFQENSRVIVMTTKEVERGKSKCVKYWPDEYALKEYGVMRVRNVKESAAHDYTLRELKL 403
The following BLAST results are available for this feature:
BLAST of TCONS_00036907 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
PTN111.006e-3950.00Tyrosine-protein phosphatase non-receptor type 11 ... [more]
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