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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00036904 ID=TCONS_00036904|Name=TCONS_00036904|organism=Clytia hemisphaerica|type=transcript|length=3058bpRun BLAST on NCBI protein sequence of TCONS_00036904-protein >TCONS_00036904-protein ID=TCONS_00036904-protein|Name=TCONS_00036904-protein|organism=Clytia hemisphaerica|type=polypeptide|length=622bp MASTRRWFHQNIGGLEAEKLLLACGRDGSFLCRPSTNKVDYTLSVRKNGARun BLAST on NCBI transcript from alignment at sc0001534:35215..48539- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00036904 ID=TCONS_00036904|Name=TCONS_00036904|organism=Clytia hemisphaerica|type=transcript|length=13325bp|location=Sequence derived from alignment at sc0001534:35215..48539- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0001534:35215..48539- >TCONS_00036904 ID=TCONS_00036904|Name=TCONS_00036904|organism=Clytia hemisphaerica|type=CDS|length=31773bp|location=Sequence derived from alignment at sc0001534:35215..48539- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00036904 vs. Swiss-Prot (Human)
Match: PTN11 (Tyrosine-protein phosphatase non-receptor type 11 OS=Homo sapiens GN=PTPN11 PE=1 SV=2) HSP 1 Score: 505.753 bits (1301), Expect = 2.180e-166 Identity = 273/528 (51.70%), Postives = 365/528 (69.13%), Query Frame = 3
Query: 81 STRRWFHQNIGGLEAEKLLLACGRDGSFLCRPS-TNKVDYTLSVRKNGAVTHIKVLNRGDNFDLGFGGDPFPTLSSLVTYYMEN--ELREKSGELIELLYPMNCKDPTTRRWFHGHISGTDSERLMLDKGKSGSFMVRESVTNPGNFVVTARTED----------IIKHVMIRNIDGSFDFGGGTKFGTLTELVDHYRENPMVEKNGGTVLHLKHPMNSTKFTAASIKDRVTELQKESEICSG-KDGFWXXXXXXXXXXYKHKYTKKVGLTSYNKHKNVFRNIVPFDHTRVVLTDGDPDDPKQDYINASYIDGEFS---------HEYIATQACLEETIVDFWRMVYSENTHVILMGMKLIEKGKKRCAQYWPDCDHSMKVGQFDIACNKETETQEFVLREFELRNNDEP---EKGTRTVYHYQFIAWPEHGLPENVGSILGILHDINLKQKDY--DYPIVVQCSNGIGRTATFIIIDMLLKIVQRKTLDCEIDVQKTVQHVRTQRANMVQLEGQYTFIYLALAHYIE 1580
++RRWFH NI G+EAE LLL G DGSFL RPS +N D+TLSVR+NGAVTHIK+ N GD +DL +GG+ F TL+ LV YYME+ +L+EK+G++IEL YP+NC DPT+ RWFHGH+SG ++E+L+ +KGK GSF+VRES ++PG+FV++ RT D + HVMIR + +D GGG +F +LT+LV+HY++NPMVE GTVL LK P+N+T+ AA I+ RV EL K +E K GFWEEFE LQQQE K Y++K G NK+KN ++NI+PFDHTRVVL DGDP++P DYINA+ I EF YIATQ CL+ T+ DFWRMV+ EN+ VI+M K +E+GK +C +YWPD + G + KE+ ++ LRE +L + RTV+ Y F WP+HG+P + G +L L +++ KQ+ P+VV CS GIGRT TFI+ID+L+ I++ K +DC+IDV KT+Q VR+QR+ MVQ E QY FIY+A+ HYIE
Sbjct: 2 TSRRWFHPNITGVEAENLLLTRGVDGSFLARPSKSNPGDFTLSVRRNGAVTHIKIQNTGDYYDL-YGGEKFATLAELVQYYMEHHGQLKEKNGDVIELKYPLNCADPTSERWFHGHLSGKEAEKLLTEKGKHGSFLVRESQSHPGDFVLSVRTGDDKGESNDGKSKVTHVMIRCQELKYDVGGGERFDSLTDLVEHYKKNPMVE-TLGTVLQLKQPLNTTRINAAEIESRVRELSKLAETTDKVKQGFWEEFETLQQQECKLLYSRKEGQRQENKNKNRYKNILPFDHTRVVLHDGDPNEPVSDYINANIIMPEFETKCNNSKPKKSYIATQGCLQNTVNDFWRMVFQENSRVIVMTTKEVERGKSKCVKYWPDEYALKEYGVMRVRNVKESAAHDYTLRELKLSKVGQALLQGNTERTVWQYHFRTWPDHGVPSDPGGVLDFLEEVHHKQESIMDAGPVVVHCSAGIGRTGTFIVIDILIDIIREKGVDCDIDVPKTIQMVRSQRSGMVQTEAQYRFIYMAVQHYIE 527 The following BLAST results are available for this feature:
BLAST of TCONS_00036904 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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