TCONS_00036901 (transcript) - C. hemisphaerica

Overview
NameTCONS_00036901
Unique NameTCONS_00036901
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2293

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00036901 ID=TCONS_00036901|Name=TCONS_00036901|organism=Clytia hemisphaerica|type=transcript|length=2293bp
CAGGGAAAGACGGATTCTGGGAAGAATTTGAGCAATTACAACAACAAGAA
TATAAACACAAATACACCAAGAAGGTCGGTTTGACGTCATATAACAAACA
TAAAAATGTCTTCAGGAACATCGTACCTTTTGATCACACGAGGGTGGTTT
TGACAGATGGTGACCCTGATGATCCGAAACAAGACTACATCAATGCTTCT
TATATCGACGGTGAGTTTTCTCACGAATACATTGCAACCCAAGCGTGTTT
AGAGGAAACGATAGTCGACTTTTGGCGGATGGTATACAGCGAAAATACGC
ATGTTATTTTGATGGGAATGAAATTGATCGAGAAAGGAAAAAAAAGATGT
GCTCAATACTGGCCAGATTGTGACCACTCCATGAAAGTTGGTCAATTCGA
TATCGCTTGTAATAAAGAAACGGAGACCCAAGAATTTGTCCTCAGAGAGT
TCGAACTCAGAAATAATGACGAGcCTGAGAAGGGAACGCGGACGGTGTAT
CACTATCAATTCATTGCATGGCCAGAACATGGTCTACCAGAGAACGTCGG
CTCCATCCTTGGCATTCTGCACGATATCAATCTCAAACAAAAGGATTATG
ATTATCCAATCGTTGTCCAGTGCAGcaATGGCATCGGAAGGACTGCAACA
TTCATCATTATCGATATGCTTTTGAAAATCGTCCAACGAAAAACGCTAGA
TTGTGAGATAGACGTTCAAAAGACGGTACAACATGTACGTACACAACGAG
CTAACATGGTGCAATTAGAGGGTCAATACACTTTCATTTACCTTGCATTG
GCTCATTACATCGAAATGGAAAATTTCAATCCTCACGTCACATCACCACC
CAAACCAAACGTACCTACCCAACCGATTGCACCTGCTATTCCAGAGCGAC
CACCTCCTCGTAATAAAAATTTAACatcaaacaaaaacaatattCCACAC
AGACCACCTCCCGCTATTCCATCCAACAATCAGCACCATCCAAACAACTA
TCAAAAGACGCCCAACGGGGGCGGTCCTGATATCCCTCCAACGCCGCCAC
CAAGGAACCCTTCCAAACCGAACGGTCCACCAAGTTTGCTGGGAATGAGA
CTTGTACAAGATCTACCAGAATCGCCAGCTCCAGGGACCCCTCCCGCTCG
GCCGCCACCAAGAGGAATGAAACCATGATGTTGAGAATCAGAGTTACATG
ATTTTACGTTCAGGGTTTGTGATTCGAAAATCATCTTTTCCAATCAGTGA
GAAGAAAGGTAACGCTCTGTTTGGCAGATTACTCTCGTGTTTGACCTCCC
TTTTGATGGCTTGCAATTACCGGTCATGAATACTTTTAAATGCATTGATG
CTTTCCATGCTGGATTTGATTTAATATTAAATAACCATGGATTTAAACCA
AAGACTCGACATTTAAAATCGATGATCCAATCGATTTACATCGATGGACC
GTCAGACATTATACAGCACGTTAaatgttttcattaaaatcgaattaaat
gttttctttctttgaaatcaaaattaatgtcttctaattttttggaaata
attgtttttacttgaaatttctTCGATATAATTTTTGTACATGATGTTGT
TATTTTGTTACTTgacaacacccctgtctcgttgATTCAGTGAATTGAAT
GGGTTTTCCCTGGCTTTTTAAGGCTAATTGTTTTAGTAAAAAAATCCACT
CAAACAATGAGTATCTGAAACAGGGgtgtttcaaaaatattgattatttt
tttatgatttttgcaattttcttaTCCGAAACTAATTTTTCACAATCATG
ATAAAACAAGTCATTACTTCGAATTCTCTCCTTCACTTCTCTCGATTtac
tttaaagatattttccgttgagtttaaagcccgaatagctagagaggaat
ctttaacctttttcAATATTTGTGGCGCATTCAGGATAACGGATTGAATT
TAGCGCTCATATTGTTTTACGCGGCAGTTTTTCAAAATCCGGTGATAGAT
TTATCTTTCAATCCGGCTTATGTCGGAAAACCAAGGCAAGCTGGCTGcgc
attttgaaaataattggcCTCGTTTTCGATGCAagagattcctctctagc
ccttTGGGATTTAAACTCAATGGAGGAAAGAGGAATCATGTATCCcttca
agtttttttattgtttcaaggATAGATcgtcattttatttggtttactTT
TTTTGGGActagatggagtttttacaagctcttatttgaatTGGTTGAtg
gttaaccagtaataaaacaatgttgttacgttttctaaagaac
Run BLAST on NCBI

transcript from alignment at sc0001534:35215..45632-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00036901 ID=TCONS_00036901|Name=TCONS_00036901|organism=Clytia hemisphaerica|type=transcript|length=10418bp|location=Sequence derived from alignment at sc0001534:35215..45632- (Clytia hemisphaerica)
CAGGGAAAGACGGATTCTGGGAAGAATTTGAGGTAATGATACATATCTTA
AAGGGAAGAGAGAAATTTTCTCTCTCGCTGTTTCTCTCTCTTGCAGTAAT
TTTTATTTTCTGATTTGAAGTCAGTTTCTATGGTTCGTACAAAATTGTGT
AAGAGTTTGTGTCCATCATGTCATATTTGCGAACTTTCTCTTCTCTATCG
AAGATCCTGCTAAAATGGATCTAAGATTATATTATAACCAAGTTTGAATT
TCGGGTTTTTGAGATTCCAGTTTGGCCGTTTTTACCGAAATGTTTTTTGG
ACCTACCCCGGTGGGATTGAGGTCCTATAAATTAACCTGCGTGTTCGTTC
ATTCATCCGTTCGTTCGTCTGTTACCAACTTTTCTCAGGATTGAATCATA
GGAATCTTTTGATTTTTGGTACAAAGGTGCAAAATGGTGGTGGCCAAAAT
GTGACGGAGCCCGATTTACGAGAAAAAATTCTTTTGGACAAATTTGGGCC
AAAAAACGGCTAAAAAACAGGTTTTTTGAACTTTGTCAAAAATTGGATCA
TTAATTTTTTCTGATTTTTTGCATGAAAGTAGGGTACCATCATAGGTAAA
AGATTTTGTTGGCGCAAAAAACGCATTTTTATCTATAAGAATCACTATTA
ATAAGCATACATCAATGTTCTTAGTCAAATTACTCAATTTTGTTATAAGA
TAGATGTTTTTTTTGCTCATGAGGGCTTACTTTTGAAGAATATGTGTTTA
GACATGAAATTTTGGTTGCTGGGCGTGTTTTTATAGAAAAACTGGCCAAA
TTCGACATTTTTTTTATAAGAACATTATAAATTACTTAGGTATTAGCTTT
TCTCGAGATTGGCTCTTTCATTCTTTATGATTTTTTGCACAAAGATGCAT
AACTATAAACCCTCAAATGTGACTCAGTCACACGTTTTTTGAAAAAAAAG
TTTTGAGGTAAATTTCAGCTAAAAAACGACTAAAAANTTGTGTTCTGAAT
GATTGTTTAATGGTCACACTCACGTAGATATCAATTATATATGTGTTAAA
TGCATAACCAGGTAGGTCCATAAAAGTATCACTTGTTTCTTCTTACAGCA
ATTACAACAACAAGAATATAAACACAAATACACCAAGAAGGTCGGTTTGA
CGTCATATAACAAACATAAAAATGTCTTCAGGAACATCGTACCTTGTAAG
TAACCTACACTTATCAGTGAAAACCAACCCTGTAGCCTTGGAAGTTATAC
GACGAAAGTTGGTTAATTAGACGAAAGTTTTGTTAATTAGACAAAATCGA
CCTATGCTTGAGTATTTTTGTCACGATTCATACAAATATCTTCTCACCTG
CATTGGACTGTACTAAAAATTTTGGACTAACCATTGCCCACTCTTTGAAA
AGTTTTTTCAAAAATTTGACTCACATGATGCGATGTCTCACATCGAGTAG
TGGAACCATTATAGCGATACTCACTTTTTTTTAACTCCGATCAGATTTAA
ATTATCTGCAGTTGTGATTGTCCAGAGTTTCTGAAAAGGAACCCTCTGTC
TAGTGTAGACTAGATTCTAAATGACTTAGGTTAGGACTTCGAGTTTGTTG
AAATCTCCTGACTTAAAAGGATAGATACATAAAACTTGCTAAAGTAGTTC
GTTTATGGCACTAGATCCTAGATTTATTGATCTTTTGAAGCAGCTAGTAA
TTTGTCAAGTAACTTTTTTCATCGTTTTTGTAGTTGATCACACGAGGGTG
GTTTTGACAGATGGTGACCCTGATGATCCGAAACAAGACTACATCAATGC
TTCTTATATCGACGTGAGTATCGCTCATCGTTCTAATTATTTTCAAGTGA
TTTGTGAGAAAGTCGCTAAGAGAAGTCTTAAAAATCTTTTCGTCATATTT
TTTCTCGTTCTTTTGAAAATATTTGAATTCCTCAAGGGAAATAACCTTGA
TAAGAAGTGCTCTCGGTAGATTTTGAGAAAACTTGAAAAAATTTTATATT
AAATTTAAGTCGTTGTATTATCTTGTTGGTACTATATATGGGACTTCGCC
AAAATTAGCTGTCCTAAAACAAAGTTACACTTGCGCTTACACTATGATGA
CAATAAAATTACAATTGCAATTGCTATTTTCAATCACACGTCAATTCTAT
GTTTTCATCTTTCAGGGTGAGTTTTCTCACGAATACATTGCAACCCAAGC
GTGTTTAGAGGAAACGATAGTCGACTTTTGGCGGATGGTATACAGCGAAA
ATACGCATGTTATTTTGATGGGAATGAAATTGATCGAGAAAGGAAAAGTA
TGGCTGATTTGTTGTTGAGCATTTTTACGCCTTGAAGAGTCTTGAGGTCA
GGGGTCAAGCTGGAGTTTTTACAAGTTCTTTGATGACTCTGTTGGTCGTT
AAATGTTGAGACAAACGATTTTATTACTTTTTCTAAAGAACGCCTCATCC
CGTCATAACCAATCAGTTAAGCATCTTGTAAAAACTCAAAGGCATCTCGA
GAACAGAAGTAGCTAAAAAACAGCTCTTTCACATGCGCATTTGAAGGAGG
CATCCTCATTAATTATAAACATCTGTTAACAATTGTACCCTCGGTTTCAA
TCCAAAAGCAAAATACGATTTAGCAAAGTTCAATATTCGGTCAATTCCGT
ATAAATTAAGAAAGAAGTTCATTTAATATCATCTTCCTTGTAGAAAAGAT
GTGCTCAATACTGGCCAGATTGTGACCACTCCATGAAAGTTGGTCAATTC
GATATCGCTTGTAATAAAGAAACGGAGACCCAAGAATTTGTCCTCAGAGA
GTTCGAACTCAGAAATAATGACGAGGTAAATGAGCGTAAAGCTTTAGCAT
GTATAACCACTTTTAGAGACAAGATGTTGTAAATGATACGTATGGGTGTA
AGTCTAGTAACTCGCGAAGCTTCATTTAAGAATCTCACAAAAACACTTCT
GCTTCTGAAACCTCAGCCAGGGTCTCATAGTCATAGTATAATCCTTTATC
AGCCTAGGGTAGCCCTGGCTCAGAGTCCCAAGCCACCTAAATATTCATGC
TTTCAAAATTTTCACTAAAGCTCTTCATTAAGGAGTGCTTTTCGGATTTT
AGACTTTAGACCATGTTTCGGAGCAAAAAAAAACGTTGCAGTCCCGTTAT
CCAATGAAAATAATGGAGCGAAACCATTTCGATATGTTTTGCTCTGTAAC
GTCTTCTTTTTTGACGTTTTCAATTTTGACGTTCACGCAGCTTTCGAAGA
CCCCTATCAGTAATTTGCGTTTCCCTCTCACTTTTCTTTTGTCAGCCTGA
GAAGGGAACGCGGACGGTGTATCACTATNTGCTTTTTCCTCTCACTTTTC
TTTTGTCAGCCTGAGAAGGGAACGCGGACGGTGTATCACTATCAATTCAT
TGCATGGCCAGAACATGGTCTACCAGAGAACGTCGGCTCCATCCTTGGCA
TTCTGCACGATATCAATCTCAAACAAAAGGATTATGATTATCCAATCGTT
GTCCAGTGCAGGTGCGTATTCTTTTGTTGAAGTCTATTAGGGGAAAAAGA
AGAATGAGCAAAGACCTTTCCATCCTTTTCGGTTTGATATTCGAGGGGCG
AGAATTTTTATTCAAATTTGAAGAAATTTTGTTTTATAGAGAAGATTTTA
AATCATTCTTGTTATTTCGATAAAAAAATCAAACAGAACATCCTCAATTC
AGACATATACGAGTTTTCAAGAATTTTTTGCATGCCACCACCTCGATTTT
GAGAAGTGGTATTTCATCCATGGACTAAAAATCTTTTGGAACATTTTGAA
ATAGTGGCCACCCTATTTTGGTCTTCTAGGGACCTTTTTTTTCTCAAAAA
TACAAAATTTCGCAACATAATCATTTGTCATTGTCATTTGAATCCTTCAA
TTGAACAAGTTTGAGCCCTACTTGTTGAATTCTCCACTCCACGTTACTAA
AAGTCATGATGTCTGAAATTTTAGTATTGACCCCTATTATAATAATGCTT
TGATGTTTGTTTACAATTTCTTTTGTTTATTTTAGCAATGGCATCGGAAG
GACTGCAACATTCATCATTATCGATATGCTTTTGAAAATCGTCCAACGAA
AAAGTAAGTTACAAAAACATTTTTACTATCATTATTACCCGAAGCTCAAA
AATCCCTCAAAGTTACTTTTGACCGAATCTTTTTATTATCTTTTTATCTT
TTTACATTAACGTACAAATCAATTAGGCTGAAATCTCTTTTTTATTAAGA
TGATCTTGTAGGCAAAACTCAGTATTGATTCCTATCGCGCCTTGTTTTTA
TTGCTTTTATTATGACTACAAGTCGAGGAAAACAACCCTAACTGTTGCTG
ATTGTTGGTAACAAACTTTCCTTTTCTTTCCAGCGCTAGATTGTGAGATA
GACGTTCAAAAGACGGTACAACATGTACGTACACAACGAGCTAACATGGT
GCAATTAGAGGTATCTTTCATTTGTAGTTTTCTCTAGCTTGTTCGTCTGA
TGATTCTTTTCGCTATTCTTTCCATTCGAAAACTGATATTTTAGAACCTT
GATGAGCTATTCTGACACCGATGGTTCCCTTTATGGATTTAACTTTTACT
ATCCGATTTGTACTAAACAATTATAGAAAATTAAGCAATTTTTAACAAAT
GTGTCTTTACGTGCAGGGTCAATACACTTTCATTTACCTTGCATTGGCTC
ATTACATCGAAATGGAAAATTTCAATCCTCACGTCACATCACCACCCAAA
CCAAACGTACCTACCCAACCGGTAAGCTCTTTTGGAGAGCATTTCTCTAC
CTTAAGGGAACTAATTTTAGCGGGAACTAATTTTCGTGGTCAAAAAAAAT
TCTAAAAAATCGGAACAGCGAAAATTAATTTGGGATTAAGCTATTTTGCC
CTATTTTGGACACATTTCTTTCATTTTCCTAAATGAAAAATGATGAAAAT
GGCTAATTTTGTAATTAGCATTTTCTCATTTCCGTGGTTTTGCCAAAAAA
CCGCGAAAAAAGCGAAAATTAGTTCCCTCTGGGTACTATGTCTTCCTTTG
ACGTAAAAGGCGACAGAAAGTCAACGGAAATGATCCTTGCTTGGAAATTT
TGAAAGAAGTTATTTCATTGATATCATGAGAAGGCATCGCATTGACTTTG
CTGTGATGAACTTTAAGTTAGACAATGCTGAAATCCTCTTGAATTGTCTA
AATTAGAGATAAGGTGTATAAGTTTTTGTAAAGTAATAATTCTTTTTAAT
TCGAAACTCCACTCCTCAAACATTTGCGAGCTAAGCGATAGTCAGCTTGA
AAAGTCTTATAAGGGTCCCTTGCATTATGAAGAACGGATGAGAAAAAGTC
TTTGATATTTAAACCTGTAAATCAGAATGAACGAAATTACATCTTAGAAA
ACAACAAATTTGTAATTTGGTCATTTTGATGTTGGCATCTTGTTGAATTG
TAATGCGGCCGTGACAAACCTTTTTAAACACCATTTCCTTTCCTTTAGAT
TGCACCTGCTATTCCAGAGCGACCACCTCCTCGTAATAAAAATTTAACAT
CAAACAAAAACAATATTCCACACAGGTAATTCTATGAAATTGTTTGTCTT
TTGAATGTCTCAATCTATGTAGGTAGCTTTTTGGACCTTCCTCCGGGTGC
CCCGGTGGAGGTTCTATAAATTAACCCATGTCCGTCCGTCCGTTCGTCCG
TCCGTCCGTCTGTTACCAGCTTTTCTCAGGATTGGCTCATTAGTTTTTTC
TGATTTTTTGCACAATGATGCAAAATGGCAATGCCTAAAATGTGACGGAA
CCCGATTTTCGAAAAAAAATATATTTGGGCAAATTTGGGCCAAAAACTAC
CTAAAAATAGGGTTTTTTGGACTTTGTGCAAAATCCTGTCATTACTTTTT
TCTGATTTTTTGCACAATGATGCAAAATGGCAATGCCTAAAATGTGACGG
AACCCGATTTTCGAAAAAAAATATATTTGGGCAAATTTGGGCCAAAAACT
ACCTAAAAATAGGGTTTTTTGGACTTTGTGCAAAATCCTGTCATTACTTT
TTTCTGATTTTTTGTACAAAGATAGAGGGCAAGATTCTTTAAAGAATGGC
TGAAGTCTTTTTTCCTGGAAAATTCTTATTCGCCTTAAAAGACGGATTTT
CGTATTTTAGGGAAATTCCCTTTAACCAAATAAGAAAATATAGCTCTTCT
CAATGTTGACTCATAGTCATAATTTTTTTCTGATTTTTTGCACAATGATG
CAAAATGACAATGCCCAAAATGTGACGTAGCCAGATTTTTAAGGAAAATT
TTTTTGGGCAAATTTGGGATAAAAACAGCTTAAAAGGTTTTTTGGGTCTG
AATGGTTTAAGTGATTTTCGTATTTGGGGACATTCCTTTTTACCATTTTA
CATTATTCAACACACAAGCTTTATTTTTCCATTCTGAATTTTTGTACAAT
TATTGTCACTTTTTTCTTATTTTCATCTGATGTTAATCATTAGGTAGGTC
CATTCAGCATGTTGCTTGTTTCTTTTCTTTTTTTCATGTCATTTCTCGTT
TCTCATCAAGCTATTTCTACATGCTGTTCACGCCCTTCTACTTTTATAGA
CCACCTCCCGCTATTCCATCCAACAATCAGCACCATCCAAACAACTATCA
AAAGACGCCCAACGGGGGCGGTCCTGATATCCCTCCAACGCCGCCACCAA
GGAACCCTTCCAAACCGAACGGTCCACCAAGTTTGCTGGGAATGAGACTT
GTACAAGATGTAAGGAGCTCTTCTTTGTCTAACTACCCGGTCCAGTAACG
TTTGGACATTTCAATATTAAGTTTTATAAACTATGACGTGTTAAAATGGT
AGCCGGAGCTATAAAATTATTACTAAACAGCTCCATTACTTAGTTTCCAT
TTGTCAGAAGAAATCGTTCTTTTTTAATTAAAGTTCTTTGTCTTTTATAG
CTACCAGAATCGCCAGCTCCAGGGACCCCTCCCGCTCGGCCGCCACCAAG
AGGAATGAAACCATGATGTTGAGAATCAGAGTTACATGATTTTACGTTCA
GGGTTTGTGATTCGAAAATCATCTNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNTTTCTTTTCTTTTTTTCATGTCATTTCTCGTTTCTCATCAAGCTA
TTTCTACATGCTGTTCACGCCCTTCTACTTTTATAGACCACCTCCCGCTA
TTCCATCCAACAATCAGCACCATCCAAACAACTATCAAAAGACGCCCAAC
GGGGGCGGTCCTGATATCCCTCCAACGCCGCCACCAAGGAACCCTTCCAA
ACCGAACGGTCCACCAAGTTTGCTGGGAATGAGACTTGTACAAGATGTAA
GGAGCTCTTCTTTGTCTAACTACCCGGTCCAGTAACGTTTGGACATTTCA
ATATTAAGTTTTATAAACTATGACGTGTTAAAATGGTAGCCGGAGCTATA
AAATTATTACTAAACAGCTCCATTACTTAGTTTCCATTTGTCAGAAGAAA
TCGTTCTTTTTTAATTAAAGTTCTTTGTCTTTTATAGCTACCAGAATCGC
CAGCTCCAGGGACCCCTCCCGCTCGGCCGCCACCAAGAGGAATGAAACCA
TGATGTTGAGAATCAGAGTTACATGATTTTACGTTCAGGGTTTGTGATTC
GAAAATCATCTTTTCCAATCAGTGAGAAGAAAGGTAACGCTCTGTTTGGC
AGATTACTCTCGTGTTTGACCTCCCTTTTGATGGCTTGCAATTACCGGTC
ATGAATACTTTTAAATGCATTGATGCTTTCCATGCTGGATTTGATTTAAT
ATTAAATAACCATGGATTTAAACCAAAGACTCGACATTTAAAATCGATGA
TCCAATCGATTTACATCGATGGACCGTCAGACATTATACAGCACGTTAAA
TGTTTTCATTAAAATCGAATTAAATGTTTTCTTTCTTTGAAATCAAAATT
AATGTCTTCTAATTTTTTGGAAATAATTGTTTTTACTTGAAATTTCTTCG
ATATAATTTTTGTACATGATGTTGTTATTTTGTTACTTGACAACACCCCT
GTCTCGTTGATTCAGTGAATTGAATGGGTTTTCCCTGGCTTTTTAAGGCT
AATTGTTTTAGTAAAAAAATCCACTCAAACAATGAGTATCTGAAACAGGG
GTGTTTCAAAAATATTGATTATTTTTTTATGATTTTTGCAATTTTCTTAT
CCGAAACTAATTTTTCACAATCATGATAAAACAAGTCATTACTTCGAATT
CTCTCCTTCACTTCTCTCGATTTACTTTAAAGATATTTTCCGTTGAGTTT
AAAGCCCGAATAGCTAGAGAGGAATCTTTAACCTTTTTCAATATTTGTGG
CGCATTCAGGATAACGGATTGAATTTAGCGCTCATATTGTTTTACGCGGC
AGTTTTTCAAAATCCGGTGATAGATTTATCTTTCAATCCGGCTTATGTCG
GAAAACCAAGGCAAGCTGGCTGCGCATTTTGAAAATAATTGGCCTCGTTT
TCGATGCAAGAGATTCCTCTCTAGCCCTTTGGGATTTAAACTCAATGGAG
GAAAGAGGAATCATGTATCCCTTCAAGTTTTTTTATTGTTTCAAGGATAG
ATCGTCATTTTATTTGGTTTACTTTTTTTGGGACTAGATGGAGTTTTTAC
AAGCTCTTATTTGAATTGGTTGATGGTTAACCAGTAATAAAACAATGTTG
TTACGTTTTCTAAAGAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_021800XLOC_021800Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00036901-exon-sc0001534-1575043694:45601..45632TCONS_00036901-exon-sc0001534-1575043694:45601..45632Clytia hemisphaericaexon
TCONS_00036901-exon-sc0001534-1575043694:44438..44534TCONS_00036901-exon-sc0001534-1575043694:44438..44534Clytia hemisphaericaexon
TCONS_00036901-exon-sc0001534-1575043694:43820..43899TCONS_00036901-exon-sc0001534-1575043694:43820..43899Clytia hemisphaericaexon
TCONS_00036901-exon-sc0001534-1575043694:43336..43467TCONS_00036901-exon-sc0001534-1575043694:43336..43467Clytia hemisphaericaexon
TCONS_00036901-exon-sc0001534-1575043694:42808..42939TCONS_00036901-exon-sc0001534-1575043694:42808..42939Clytia hemisphaericaexon
TCONS_00036901-exon-sc0001534-1575043694:42122..42273TCONS_00036901-exon-sc0001534-1575043694:42122..42273Clytia hemisphaericaexon
TCONS_00036901-exon-sc0001534-1575043694:41530..41597TCONS_00036901-exon-sc0001534-1575043694:41530..41597Clytia hemisphaericaexon
TCONS_00036901-exon-sc0001534-1575043694:41173..41249TCONS_00036901-exon-sc0001534-1575043694:41173..41249Clytia hemisphaericaexon
TCONS_00036901-exon-sc0001534-1575043694:40862..40966TCONS_00036901-exon-sc0001534-1575043694:40862..40966Clytia hemisphaericaexon
TCONS_00036901-exon-sc0001534-1575043694:40058..40134TCONS_00036901-exon-sc0001534-1575043694:40058..40134Clytia hemisphaericaexon
TCONS_00036901-exon-sc0001534-1575043694:38874..39033TCONS_00036901-exon-sc0001534-1575043694:38874..39033Clytia hemisphaericaexon
TCONS_00036901-exon-sc0001534-1575043694:35215..36395TCONS_00036901-exon-sc0001534-1575043694:35215..36395Clytia hemisphaericaexon
TCONS_00036901-exon-sc0001534-1510915933:45601..45632TCONS_00036901-exon-sc0001534-1510915933:45601..45632Clytia hemisphaericaexon
TCONS_00036901-exon-sc0001534-1510915933:44438..44534TCONS_00036901-exon-sc0001534-1510915933:44438..44534Clytia hemisphaericaexon
TCONS_00036901-exon-sc0001534-1510915933:43820..43899TCONS_00036901-exon-sc0001534-1510915933:43820..43899Clytia hemisphaericaexon
TCONS_00036901-exon-sc0001534-1510915933:43336..43467TCONS_00036901-exon-sc0001534-1510915933:43336..43467Clytia hemisphaericaexon
TCONS_00036901-exon-sc0001534-1510915933:42808..42939TCONS_00036901-exon-sc0001534-1510915933:42808..42939Clytia hemisphaericaexon
TCONS_00036901-exon-sc0001534-1510915933:42122..42273TCONS_00036901-exon-sc0001534-1510915933:42122..42273Clytia hemisphaericaexon
TCONS_00036901-exon-sc0001534-1510915933:41530..41597TCONS_00036901-exon-sc0001534-1510915933:41530..41597Clytia hemisphaericaexon
TCONS_00036901-exon-sc0001534-1510915933:41173..41249TCONS_00036901-exon-sc0001534-1510915933:41173..41249Clytia hemisphaericaexon
TCONS_00036901-exon-sc0001534-1510915933:40862..40966TCONS_00036901-exon-sc0001534-1510915933:40862..40966Clytia hemisphaericaexon
TCONS_00036901-exon-sc0001534-1510915933:40058..40134TCONS_00036901-exon-sc0001534-1510915933:40058..40134Clytia hemisphaericaexon
TCONS_00036901-exon-sc0001534-1510915933:38874..39033TCONS_00036901-exon-sc0001534-1510915933:38874..39033Clytia hemisphaericaexon
TCONS_00036901-exon-sc0001534-1510915933:35215..36395TCONS_00036901-exon-sc0001534-1510915933:35215..36395Clytia hemisphaericaexon
TCONS_00036901-exon-sc0001534-1491911889:45601..45632TCONS_00036901-exon-sc0001534-1491911889:45601..45632Clytia hemisphaericaexon
TCONS_00036901-exon-sc0001534-1491911889:44438..44534TCONS_00036901-exon-sc0001534-1491911889:44438..44534Clytia hemisphaericaexon
TCONS_00036901-exon-sc0001534-1491911889:43820..43899TCONS_00036901-exon-sc0001534-1491911889:43820..43899Clytia hemisphaericaexon
TCONS_00036901-exon-sc0001534-1491911889:43336..43467TCONS_00036901-exon-sc0001534-1491911889:43336..43467Clytia hemisphaericaexon
TCONS_00036901-exon-sc0001534-1491911889:42808..42939TCONS_00036901-exon-sc0001534-1491911889:42808..42939Clytia hemisphaericaexon
TCONS_00036901-exon-sc0001534-1491911889:42122..42273TCONS_00036901-exon-sc0001534-1491911889:42122..42273Clytia hemisphaericaexon
TCONS_00036901-exon-sc0001534-1491911889:41530..41597TCONS_00036901-exon-sc0001534-1491911889:41530..41597Clytia hemisphaericaexon
TCONS_00036901-exon-sc0001534-1491911889:41173..41249TCONS_00036901-exon-sc0001534-1491911889:41173..41249Clytia hemisphaericaexon
TCONS_00036901-exon-sc0001534-1491911889:40862..40966TCONS_00036901-exon-sc0001534-1491911889:40862..40966Clytia hemisphaericaexon
TCONS_00036901-exon-sc0001534-1491911889:40058..40134TCONS_00036901-exon-sc0001534-1491911889:40058..40134Clytia hemisphaericaexon
TCONS_00036901-exon-sc0001534-1491911889:38874..39033TCONS_00036901-exon-sc0001534-1491911889:38874..39033Clytia hemisphaericaexon
TCONS_00036901-exon-sc0001534-1491911889:35215..36395TCONS_00036901-exon-sc0001534-1491911889:35215..36395Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001534supercontigsc0001534:35215..45632 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.765501	6.05393e-05	0	9.52917e-07	0.0336692	0.450394	0.232394	1.15989e-05	0.0741697	1.81453e-08	0	6.27204e-06	0.00119159	8.76117e-08	2.73912e-05	0.000646724	0	2.07565e-09	0.00105164	1.29562	0	0	0.246893	0.000266693	0.000442411	0.0164169	1.87008	1.0253e-05	3.38205e-06	3.62401e-06
Blast
[Close]
BLAST of TCONS_00036901 vs. Swiss-Prot (Human)
Match: PTN6 (Tyrosine-protein phosphatase non-receptor type 6 OS=Homo sapiens GN=PTPN6 PE=1 SV=1)

HSP 1 Score: 245.743 bits (626), Expect = 7.442e-71
Identity = 125/279 (44.80%), Postives = 179/279 (64.16%), Query Frame = 3 
Query:    3 GKDGFWXXXXXXXXXXYKHKYTKKVGLTSYNKHKNVFRNIVPFDHTRVVLTDGDPDDPKQDYINASYIDGEF------SHEYIATQACLEETIVDFWRMVYSENTHVILMGMKLIEKGKKRCAQYWPDCDHSMKVGQFDIACNKETETQEFVLREFELRNNDEPEKGTRTVYHYQFIAWPEHGLPENVGSILGILHDINLKQKDYDY--PIVVQCSNGIGRTATFIIIDMLLKIVQRKTLDCEIDVQKTVQHVRTQRANMVQLEGQYTFIYLALAHYIE 815
             K GFWEEFE LQ+QE K+ + +  G    NK KN ++NI+PFDH+RV+L   D + P  DYINA+YI  +       +  YIA+Q CLE T+ DFW+M + EN+ VI+M  + +EKG+ +C  YWP+       G + +    E +T E+ LR  ++   D  +   R ++HYQ+++WP+HG+P   G +L  L  IN +Q+   +  PI+V CS GIGRT T I+IDML++ +  K LDC+ID+QKT+Q VR QR+ MVQ E QY FIY+A+A +IE
Sbjct:  240 AKAGFWEEFESLQKQEVKNLHQRLEGQRPENKGKNRYKNILPFDHSRVILQGRDSNIPGSDYINANYIKNQLLGPDENAKTYIASQGCLEATVNDFWQMAWQENSRVIVMTTREVEKGRNKCVPYWPEVGMQRAYGPYSVTNCGEHDTTEYKLRTLQVSPLDNGDL-IREIWHYQYLSWPDHGVPSEPGGVLSFLDQINQRQESLPHAGPIIVHCSAGIGRTGTIIVIDMLMENISTKGLDCDIDIQKTIQMVRAQRSGMVQTEAQYKFIYVAIAQFIE 517
The following BLAST results are available for this feature:
BLAST of TCONS_00036901 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
PTN67.442e-7144.80Tyrosine-protein phosphatase non-receptor type 6 O... [more]
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