TCONS_00036900 (transcript) - C. hemisphaerica

Overview
NameTCONS_00036900
Unique NameTCONS_00036900
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1711

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00036900 ID=TCONS_00036900|Name=TCONS_00036900|organism=Clytia hemisphaerica|type=transcript|length=1711bp
TTCGTTTGAACAGAAGACAAAATCAAAAGAGGAAGAATTAATAAGGAAAA
AGAACTGGGAGAACAAAACAACAGCAGTAGAAtcttaatttgattttttg
cgcTTTTTTACCATTCTTATTCAATTTGATATAAAGAAAATCGAGGAAAT
GAATAAAACAGTTCACAGTTCGCAAAAAGAGGTTCAGCCCTAAAGTAGGT
GGGAGTACACAGTAGAGATAGGAGTGATTTATTTTCTCGATATTTGTGTC
AACAGCTGAACGATTTCGAGTAAATCTCTGCGTTTATTTTTGTGCTGGAC
GTGAAAATGAAGAGCCTTCTGGTCATCGCGCTGTTTGCTTTTTGTTATGC
AAAAGTAGAAGAAAAACACAAGCAAGtcCACCATAAACAGCCAGTCGAAG
CTAACGTTAAGAAATCACCTCCCGTCCAAGAGCGATTCGGTAAAGAAGAA
CAGAACAGCCCATTAGAGGGAAGATTCGGAAAAGAATCGGCTACCAAACC
TGAGGAAGAGGCTGCTTCACATGTTCTCGCCGTTCGATCACCAAATGATA
AAGAATTACCGGCCGAATACCTAGCACATTCACATAAGAAAGAGAGCATT
CCGATGAAATACAGTGGATCATCAGAGGAAGGGGATGCTGAATTACCACA
TTCAATGCTGGTTGGAGATGACAAACTACCTCACTCAATGATCAATGGAG
ACGAGAAGTTACCGCAGTCTATGCTTTATGCCcgagaaaatgaagattta
cctcTCTTCCGTAAAGATTTACCGCTCTTCAAGAAAGACCTGCCGCTCTT
CAAGAAAGATCTTCCGCTGTTCCGCAAAGACCTCCCTTTGTTCCACAAAG
ACCTACCCCTCTTCAAAAAAGATCTTCCACTTTTTAGAAAAGATTTGCCA
CTTTTCCGAAAAGACTTGCCGTTGTTCCGTAAAGACCTGCCTTTATTCAA
GAAGGATTTACCATTGTTCCGCAAAGATCTCCCGCTCTTCAAAAAAGATC
TACCACTCTTCAGGAAAGATTTACCACTCTTCAAGAAAGAAATCGAAGAG
TTACCACTTTTCAGAAAAGAAAGCTCAGAACTTCCTCTTttcagaaaaga
aaatgaagatttgcCACTATTCCGAAAAGATTCCGAGTTGCCATTGTTCC
GGAAGGAAAATTCAGAGCTTCCTCTTTTCAGAAAGGAAGCTTCCGAGCTA
CCACTATTCCGAAGAGAATTACCGCTGTTCCGCAAAGAATCAAGACTACC
GCTTTTTCGGAAATCACTGGTCAAACGATTCAAAGCATTGCCTTTGTTTA
AGAGGTCCGAACGCCTTCCCTATTTCAAGAAAGACTTGCCATGGAAGCTG
GCACACCACGAGTAAACAACAATTTCTAAAATCACCAACGAATTGCTGGT
CAATTATTATCACTATTAATATACATTCGAGATGAACATTGGTTTATAAG
GGGGAGAACTAATGGAGGTATACTTCCCATGAAGTAAAAACCGAAATAGA
AGGACTATATGTTATGTAAATATTACTTAACAACAAtcttcaaaaactga
tgacaaAGATTTAAAGGCAAAAGTTTTCGTTGTTTATACCAATAGAATTT
GTAAGTAAATTTTATTAAGTTTATTGGAAATAAAGATTCGATTCAAAGAA
AAAGGACGGTCGAacttttattgtaaaaaaatgttctgttaaactaaaac
tttttttttca
Run BLAST on NCBI

protein sequence of TCONS_00036900-protein

>TCONS_00036900-protein ID=TCONS_00036900-protein|Name=TCONS_00036900-protein|organism=Clytia hemisphaerica|type=polypeptide|length=352bp
MKSLLVIALFAFCYAKVEEKHKQVHHKQPVEANVKKSPPVQERFGKEEQN
SPLEGRFGKESATKPEEEAASHVLAVRSPNDKELPAEYLAHSHKKESIPM
KYSGSSEEGDAELPHSMLVGDDKLPHSMINGDEKLPQSMLYARENEDLPL
FRKDLPLFKKDLPLFKKDLPLFRKDLPLFHKDLPLFKKDLPLFRKDLPLF
RKDLPLFRKDLPLFKKDLPLFRKDLPLFKKDLPLFRKDLPLFKKEIEELP
LFRKESSELPLFRKENEDLPLFRKDSELPLFRKENSELPLFRKEASELPL
FRRELPLFRKESRLPLFRKSLVKRFKALPLFKRSERLPYFKKDLPWKLAH
HE
Run BLAST on NCBI

transcript from alignment at sc0001534:23021..25155-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00036900 ID=TCONS_00036900|Name=TCONS_00036900|organism=Clytia hemisphaerica|type=transcript|length=2135bp|location=Sequence derived from alignment at sc0001534:23021..25155- (Clytia hemisphaerica)
TTCGTTTGAACAGAAGACAAAATCAAAAGAGGAAGAATTAATAAGGAAAA
AGAACTGGGAGAACAAAACAACAGCAGTAGAATCTTAATTTGATTTTTTG
CGCTTTTTTACCATTCTTATTCAATTTGATATAAAGAAAATCGAGGAAAT
GAATAAAACAGTTCACAGTTCGCAAAAAGAGGTTCAGCCCTAAAGTAGGT
GGGAGTACACAGTAGAGATAGGAGTGATTTATTTTCTCGATATTTGTGTC
AACAGCTGAACGATTTCGAGTAAATCTCTGCGTTTATTTTTGTGCTGGAC
GTGAAAATGAAGAGCCTTCTGGTCATCGCGCTGTTTGCTTTTTGTTATGC
AAAAGTAGAAGAAAAACACAAGCAAGGTGAGAAGACATTCAAACCCATAT
CTCGTTACCATGTCCTATGACGTTTTGTCAACATTCAGAAATCTTTCTTT
AAAAGAATACTGTTAGTTTCCGCACACAAATTTTAAGACCTTGAAAATGT
ATGAAGCCTTGGAGCTCGTTTGCATGACTTTCCCGTGTGGAGCGTTTTGA
AATTCGTTGGTACGGTTTTCAATCTAAATCCTCATATTGTAAGCCAGAGT
TGCCTTCATGTAAATGGAGAGAATGTTTAATTCTGGGTGGTGTAGTGGCA
TATTTGGTGCGTGTTATAATAAATGTCAAAAGATTACGACCACACTGATT
CGGAAATTAAAACTTAACCTAAGACGGCAACTCGAAACAGCCTGAATCTC
AGAATGTATATACCAAATCTTTTCAAATAAGTATTTTTCAACTTTTTTAG
TCCACCATAAACAGCCAGTCGAAGCTAACGTTAAGAAATCACCTCCCGTC
CAAGAGCGATTCGGTAAAGAAGAACAGAACAGCCCATTAGAGGGAAGATT
CGGAAAAGAATCGGCTACCAAACCTGAGGAAGAGGCTGCTTCACATGTTC
TCGCCGTTCGATCACCAAATGATAAAGAATTACCGGCCGAATACCTAGCA
CATTCACATAAGAAAGAGAGCATTCCGATGAAATACAGTGGATCATCAGA
GGAAGGGGATGCTGAATTACCACATTCAATGCTGGTTGGAGATGACAAAC
TACCTCACTCAATGATCAATGGAGACGAGAAGTTACCGCAGTCTATGCTT
TATGCCCGAGAAAATGAAGATTTACCTCTCTTCCGTAAAGATTTACCGCT
CTTCAAGAAAGACCTGCCGCTCTTCAAGAAAGATCTTCCGCTGTTCCGCA
AAGACCTCCCTTTGTTCCACAAAGACCTACCCCTCTTCAAAAAAGATCTT
CCACTTTTTAGAAAAGATTTGCCACTTTTCCGAAAAGACTTGCCGTTGTT
CCGTAAAGACCTGCCTTTATTCAAGAAGGATTTACCATTGTTCCGCAAAG
ATCTCCCGCTCTTCAAAAAAGATCTACCACTCTTCAGGAAAGATTTACCA
CTCTTCAAGAAAGAAATCGAAGAGTTACCACTTTTCAGAAAAGAAAGCTC
AGAACTTCCTCTTTTCAGAAAAGAAAATGAAGATTTGCCACTATTCCGAA
AAGATTCCGAGTTGCCATTGTTCCGGAAGGAAAATTCAGAGCTTCCTCTT
TTCAGAAAGGAAGCTTCCGAGCTACCACTATTCCGAAGAGAATTACCGCT
GTTCCGCAAAGAATCAAGACTACCGCTTTTTCGGAAATCACTGGTCAAAC
GATTCAAAGCATTGCCTTTGTTTAAGAGGTCCGAACGCCTTCCCTATTTC
AAGAAAGACTTGCCATGGAAGCTGGCACACCACGAGTAAACAACAATTTC
TAAAATCACCAACGAATTGCTGGTCAATTATTATCACTATTAATATACAT
TCGAGATGAACATTGGTTTATAAGGGGGAGAACTAATGGAGGTATACTTC
CCATGAAGTAAAAACCGAAATAGAAGGACTATATGTTATGTAAATATTAC
TTAACAACAATCTTCAAAAACTGATGACAAAGATTTAAAGGCAAAAGTTT
TCGTTGTTTATACCAATAGAATTTGTAAGTAAATTTTATTAAGTTTATTG
GAAATAAAGATTCGATTCAAAGAAAAAGGACGGTCGAACTTTTATTGTAA
AAAAATGTTCTGTTAAACTAAAACTTTTTTTTTCA

Coding sequence (CDS) from alignment at sc0001534:23021..25155-

>TCONS_00036900 ID=TCONS_00036900|Name=TCONS_00036900|organism=Clytia hemisphaerica|type=CDS|length=2118bp|location=Sequence derived from alignment at sc0001534:23021..25155- (Clytia hemisphaerica)
TCCACCATAAACAGCCAGTCGAAGCTAACGTTAAGAAATCACCTCCCGTC
CAAGAGCGATTCGGTAAAGAAGAACAGAACAGCCCATTAGAGGGAAGATT
CGGAAAAGAATCGGCTACCAAACCTGAGGAAGAGGCTGCTTCACATGTTC
TCGCCGTTCGATCACCAAATGATAAAGAATTACCGGCCGAATACCTAGCA
CATTCACATAAGAAAGAGAGCATTCCGATGAAATACAGTGGATCATCAGA
GGAAGGGGATGCTGAATTACCACATTCAATGCTGGTTGGAGATGACAAAC
TACCTCACTCAATGATCAATGGAGACGAGAAGTTACCGCAGTCTATGCTT
TATGCCCGAGAAAATGAAGATTTACCTCTCTTCCGTAAAGATTTACCGCT
CTTCAAGAAAGACCTGCCGCTCTTCAAGAAAGATCTTCCGCTGTTCCGCA
AAGACCTCCCTTTGTTCCACAAAGACCTACCCCTCTTCAAAAAAGATCTT
CCACTTTTTAGAAAAGATTTGCCACTTTTCCGAAAAGACTTGCCGTTGTT
CCGTAAAGACCTGCCTTTATTCAAGAAGGATTTACCATTGTTCCGCAAAG
ATCTCCCGCTCTTCAAAAAAGATCTACCACTCTTCAGGAAAGATTTACCA
CTCTTCAAGAAAGAAATCGAAGAGTTACCACTTTTCAGAAAAGAAAGCTC
AGAACTTCCTCTTTTCAGAAAAGAAAATGAAGATTTGCCACTATTCCGAA
AAGATTCCGAGTTGCCATTGTTCCGGAAGGAAAATTCAGAGCTTCCTCTT
TTCAGAAAGGAAGCTTCCGAGCTACCACTATTCCGAAGAGAATTACCGCT
GTTCCGCAAAGAATCAAGACTACCGCTTTTTCGGAAATCACTGGTCAAAC
GATTCAAAGCATTGCCTTTGTTTAAGAGGTCCGAACGCCTTCCCTATTTC
AAGAAAGACTTGCCATGGAAGCTGGCACACCACGAGTAAATGAAGAGCCT
TCTGGTCATCGCGCTGTTTGCTTTTTGTTATGCAAAAGTAGAAGAAAAAC
ACAAGCAAGTCCACCATAAACAGCCAGTCGAAGCTAACGTTAAGAAATCA
CCTCCCGTCCAAGAGCGATTCGGTAAAGAAGAACAGAACAGCCCATTAGA
GGGAAGATTCGGAAAAGAATCGGCTACCAAACCTGAGGAAGAGGCTGCTT
CACATGTTCTCGCCGTTCGATCACCAAATGATAAAGAATTACCGGCCGAA
TACCTAGCACATTCACATAAGAAAGAGAGCATTCCGATGAAATACAGTGG
ATCATCAGAGGAAGGGGATGCTGAATTACCACATTCAATGCTGGTTGGAG
ATGACAAACTACCTCACTCAATGATCAATGGAGACGAGAAGTTACCGCAG
TCTATGCTTTATGCCCGAGAAAATGAAGATTTACCTCTCTTCCGTAAAGA
TTTACCGCTCTTCAAGAAAGACCTGCCGCTCTTCAAGAAAGATCTTCCGC
TGTTCCGCAAAGACCTCCCTTTGTTCCACAAAGACCTACCCCTCTTCAAA
AAAGATCTTCCACTTTTTAGAAAAGATTTGCCACTTTTCCGAAAAGACTT
GCCGTTGTTCCGTAAAGACCTGCCTTTATTCAAGAAGGATTTACCATTGT
TCCGCAAAGATCTCCCGCTCTTCAAAAAAGATCTACCACTCTTCAGGAAA
GATTTACCACTCTTCAAGAAAGAAATCGAAGAGTTACCACTTTTCAGAAA
AGAAAGCTCAGAACTTCCTCTTTTCAGAAAAGAAAATGAAGATTTGCCAC
TATTCCGAAAAGATTCCGAGTTGCCATTGTTCCGGAAGGAAAATTCAGAG
CTTCCTCTTTTCAGAAAGGAAGCTTCCGAGCTACCACTATTCCGAAGAGA
ATTACCGCTGTTCCGCAAAGAATCAAGACTACCGCTTTTTCGGAAATCAC
TGGTCAAACGATTCAAAGCATTGCCTTTGTTTAAGAGGTCCGAACGCCTT
CCCTATTTCAAGAAAGACTTGCCATGGAAGCTGGCACACCACGAGTAAAT
GAAGAGCCTTCTGGTCATCGCGCTGTTTGCTTTTTGTTATGCAAAAGTAG
AAGAAAAACACAAGCAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_021799XLOC_021799Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00036900-proteinTCONS_00036900-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00036900-exon-sc0001534-1575043694:24780..25155TCONS_00036900-exon-sc0001534-1575043694:24780..25155Clytia hemisphaericaexon
TCONS_00036900-exon-sc0001534-1575043694:23021..24355TCONS_00036900-exon-sc0001534-1575043694:23021..24355Clytia hemisphaericaexon
TCONS_00036900-exon-sc0001534-1510915933:24780..25155TCONS_00036900-exon-sc0001534-1510915933:24780..25155Clytia hemisphaericaexon
TCONS_00036900-exon-sc0001534-1510915933:23021..24355TCONS_00036900-exon-sc0001534-1510915933:23021..24355Clytia hemisphaericaexon
TCONS_00036900-exon-sc0001534-1491911889:24780..25155TCONS_00036900-exon-sc0001534-1491911889:24780..25155Clytia hemisphaericaexon
TCONS_00036900-exon-sc0001534-1491911889:23021..24355TCONS_00036900-exon-sc0001534-1491911889:23021..24355Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001534supercontigsc0001534:23021..25155 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0236203	0	0.0534883	0.15699	0.0637067	0.0251709	0.091103	0	0.835985	0.320513	1.36404	1.55737	79.0484	74.9959	1.32783	0.964369	10.7631	14.6304	221.109	337.236	50.722	58.1473	12.6205	14.8717	14.0495	13.8742	3.43315	3.52568	0.262167	0.106843
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00036900 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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