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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00036887 ID=TCONS_00036887|Name=TCONS_00036887|organism=Clytia hemisphaerica|type=transcript|length=1227bp
ccgttcaattgagatcgtctggcagTTGCTTTCCCAGGAACTGaagaaaa
tatctaaaaaatcgAGACGGGTGggggtgaaaaaaaaattatcttcgtTG
TTCGACAGAGAAAGCCTTAAACATTTAAGATTTGCTATAGACGctctttc
agaaaatgaagACGAGGTAAAAGCTGGATTAAAAGTTCAAATCCAAAACG
TCATCAAGTTAGCTGCAAAGACTCTTGAAGCTCACTTTTTGGTCGAAGCA
AAGAAAGAACTTTCGGAAATGGTTTGTGAGTTCATGAAAGTGTTTCGACT
CGTGGAAGATGAGCTTTTCAATGGAGCGCTTTATAAGATTAAGCAAAAAA
GGAACAAATCAACCCGGAAGCCAGGAAATTTACCGGATGAAGAAATTGTA
CAAGATTTGAAGTCATGTCTCCTTGGAATAATACGGAAAgatcaatttat
tttcaaacaacCAAGTGAAGTATACGTGAACGTTAGAGACGCTGCCTGCG
CTAGGTTGACCATTTTTAATGGTCGTCGTGGTGGTGAGCCAGCTCGTTTG
TTTACTTACCAATGGCAAGAAGCCATCGATGGAATATGGCCTCGACCGGA
AAAACGCGAACAATATGAAAGAGAAGTTAACACAAAAAACCGGATCCCGT
ACCAAGAAGGGAAAGGCAAGAAGCAGGTATGTGTGTTTATCCCACCTGAC
ACGGTTGATGCAATGATATTTTTGTGCGATGATAAAGTCAGGAGCGATGC
TGGggtatcaagcaacaacaagtACGCCTTTCCATCAACTGGTAACAGTT
TGCTGCACTGCGAGGGCTGACAATCACTGACAACATGCTGCAAAAAGGCC
GGTATAGAGTCCAAAATCAATGGCACATTAAATCGCCATAGAGTTTCTTC
CATAATGGGCGCGTTTAATCTTACCGAAACTGACCGAAACCTATCATATG
ATCACTTTGGTCACTCTGAGGAAATGAACAGATTCGTGTATCAAATCCCT
CAGGCTGAACAGCAGTTAGCCAAAAACAGGAGAGTATTTATCTCTCATCG
ATAAGAATCAAAGGCCATCAAATTCTGAGGGATTAGACTCGCAAATGAAT
GCTACCACATCATCTCAATCGACCGatcaaaagaaaacaacaacTAATAA
TGGTGAAAGGAAACATCCCAGGAGAAAGAGAGAGGCTGCAGCAGTTGAAA
GCGACCATAGCTCGTCTGATAGCTAAG Run BLAST on NCBI protein sequence of TCONS_00036887-protein >TCONS_00036887-protein ID=TCONS_00036887-protein|Name=TCONS_00036887-protein|organism=Clytia hemisphaerica|type=polypeptide|length=272bp
RSIEIVWQLLSQELKKISKKSRRVGVKKKLSSLFDRESLKHLRFAIDALS
ENEDEVKAGLKVQIQNVIKLAAKTLEAHFLVEAKKELSEMVCEFMKVFRL
VEDELFNGALYKIKQKRNKSTRKPGNLPDEEIVQDLKSCLLGIIRKDQFI
FKQPSEVYVNVRDAACARLTIFNGRRGGEPARLFTYQWQEAIDGIWPRPE
KREQYEREVNTKNRIPYQEGKGKKQVCVFIPPDTVDAMIFLCDDKVRSDA
GVSSNNKYAFPSTGNSLLHCEG Run BLAST on NCBI transcript from alignment at sc0001531:28817..31190+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00036887 ID=TCONS_00036887|Name=TCONS_00036887|organism=Clytia hemisphaerica|type=transcript|length=2374bp|location=Sequence derived from alignment at sc0001531:28817..31190+ (Clytia hemisphaerica)
ccgttcaattgagatcgtctggcagTTGCTTTCCCAGGAACTGaagaaaa
tatctaaaaaatcgAGACGGGTGggggtgaaaaaaaaattatcttcgtTG
TTCGACAGAGAAAGCCTTAAACATTTAAGATTTGCTATAGACGctctttc
agaaaatgaagACGAGGTAAAAGCTGGATTAAAAGTTCAAATCCAAAACG
TCATCAAGTTAGCTGCAAAGACTCTTGAAGCTCACTTTTTGGTCGAAGCA
AAGAAAGAACTTTCGGAAATGGTTTGTGAGTTCATGAAAGTGTTTCGACT
CGTGGAAGATGAGCTTTTCAATGGAGCGCTTTATAAGATTAAGCAAAAAA
GGAACAAATCAACCCGGAAGCCAGGAAATTTACCGGATGAAGAAATTGTA
CAAGATTTGAAGTCATGTCTCCTTGGAATAATACGGAAAgatcaatttat
tttcaaacaacCAAGTGAAGTATACGTGAACGTTAGAGACGCTGCCTGCG
CTAGGTTGACCATTTTTAATGGTCGTCGTGGTGGTGAGCCAGCTCGTTTG
TTTACTTACCAATGGCAAGAAGCCATCGATGGAATATGGCCTCGACCGGA
AAAACGCGAACAATATGAAAGAGAAGTTAACACAAAAAACCGGATCCCGT
ACCAAGAAGGGAAAGGCAAGAAGCAGGTACCTTAACCAAATTCAGTCATG
AATTAAGAAATTGTCGAAATTGAGggtgaaaatattctttacttATTCCT
ACTTCTTAATAACTTGAGAAattatcaatttgagagttttggacttaaAT
GAATATTCTGAGAATTACATTTCTgcctaaaagtttaaaatttaagTCTA
ACAAAGGAAGTAGTTTTCTCAATTAGGTGCACATGAAATGAGTGTATTCT
TAtcgaatttttatttaaaaaagcgtgtatgtatGTCACAGACACACTGG
AATCCCAGCCCTATcggaacatttaaaaaaaatcatcccTGGTAGGataa
taccctagaatttcagctccacttgaaaattaacttttatttcatcctta
ttcaaaattcaatgtttcaaAGTTACACAAATcacccccactgaattttt
taacctttagcaaaatagaatttctatcccaaatGGGANTTCAAAATCTC
ACTAAATTTTTCCTTTAGcaaaatagaatttctatcccaaatGGGATTTC
AATTGGAACTTTTATCCCCAATGAGGAAAAAGTTCtaacggggctgtgag
acaggggtgttagtTATCATTAACTGAAAGAGTAATTTTGGGGCAGATTT
ATGGTTCATCAACATAAgaaagtaaagttttttttagcttttttctttac
agaaaTCAATGGTAATCTATTCGTCATTAATTAATTCTcgtatttttttt
cacttaagGTATGTGTGTTTATCCCACCTGACACGGTTGATGCAATGATA
TTTTTGTGCGATGATAAAGTCAGGAGCGATGCTGGggtatcaagcaacaa
caagtACGCCTTTCCATCAACTGGTAACAGTTTGCTGCACTGCGAGGGCT
GACAATCACTGACAACATGCTGCAAAAAGGCCGGTATAGAGTCCAAAATC
AATGGCACATTAAATCGCCATAGAGTTTCTTCCATAATGGGCGCGTTTAA
TCTTACCGAAACTGACCGAAACCTATCATATGATCACTTTGGTCACTCTG
AGGAAATGAACAGATTCGTGTATCAAATCCCTCAGGCTGAACAGCAGTTA
GCCAAAAACAGGAGAGTATTTATCTCTCATCGATAAGAATCAAAGGCCAT
CAAATTCTGAGGGATTAGACTCGCAAATGAATGCTACCACATCATCTCAA
TCGACCGatcaaaagaaaacaacaacTAATAATGGTATGGGTACTCcaca
attttcgattttttaaagtttaatcTTCCCCTTATTCATCATAGAATGAC
CCTCCCCCATGAGCTCAGGAGGGGGGCTAAGTATTGAGTAATCAAACTGG
GGGCTGAACTGAAtgcaaataatttcaaaaaatcaattccaTCAAATTTC
TAATTTATATACCTTTTAAGCTCTTTTGGTTGTGAAATGTCAATTAGGTG
ACCttgttgtttattttgtttaggAACTTTAAAACataatgtttttggtt
ttcttAAAGGTGGGTGGGGGCATTTTCATTAGTCCCCCTGAAAAGAgctg
ggggctggacccctctgcattCTATGTTTATTATCGAATGACCTCCGAGG
CTAAATACTGAGATGTATTAAAGATTAATCGCATTAATTTCATTATTAGG
TGAAAGGAAACATCCCAGGAGAAAGAGAGAGGCTGCAGCAGTTGAAAGCG
ACCATAGCTCGTCTGATAGCTAAG Coding sequence (CDS) from alignment at sc0001531:28817..31190+ >TCONS_00036887 ID=TCONS_00036887|Name=TCONS_00036887|organism=Clytia hemisphaerica|type=CDS|length=1638bp|location=Sequence derived from alignment at sc0001531:28817..31190+ (Clytia hemisphaerica)
cgttcaattgagatcgtctggcagTTGCTTTCCCAGGAACTGaagaaaat
atctaaaaaatcgAGACGGGTGggggtgaaaaaaaaattatcttcgtTGT
TCGACAGAGAAAGCCTTAAACATTTAAGATTTGCTATAGACGctctttca
gaaaatgaagACGAGGTAAAAGCTGGATTAAAAGTTCAAATCCAAAACGT
CATCAAGTTAGCTGCAAAGACTCTTGAAGCTCACTTTTTGGTCGAAGCAA
AGAAAGAACTTTCGGAAATGGTTTGTGAGTTCATGAAAGTGTTTCGACTC
GTGGAAGATGAGCTTTTCAATGGAGCGCTTTATAAGATTAAGCAAAAAAG
GAACAAATCAACCCGGAAGCCAGGAAATTTACCGGATGAAGAAATTGTAC
AAGATTTGAAGTCATGTCTCCTTGGAATAATACGGAAAgatcaatttatt
ttcaaacaacCAAGTGAAGTATACGTGAACGTTAGAGACGCTGCCTGCGC
TAGGTTGACCATTTTTAATGGTCGTCGTGGTGGTGAGCCAGCTCGTTTGT
TTACTTACCAATGGCAAGAAGCCATCGATGGAATATGGCCTCGACCGGAA
AAACGCGAACAATATGAAAGAGAAGTTAACACAAAAAACCGGATCCCGTA
CCAAGAAGGGAAAGGCAAGAAGCAGGTATGTGTGTTTATCCCACCTGACA
CGGTTGATGCAATGATATTTTTGTGCGATGATAAAGTCAGGAGCGATGCT
GGggtatcaagcaacaacaagtACGCCTTTCCATCAACTGGTAACAGTTT
GCTGCACTGCGAGGGCTGAcgttcaattgagatcgtctggcagTTGCTTT
CCCAGGAACTGaagaaaatatctaaaaaatcgAGACGGGTGggggtgaaa
aaaaaattatcttcgtTGTTCGACAGAGAAAGCCTTAAACATTTAAGATT
TGCTATAGACGctctttcagaaaatgaagACGAGGTAAAAGCTGGATTAA
AAGTTCAAATCCAAAACGTCATCAAGTTAGCTGCAAAGACTCTTGAAGCT
CACTTTTTGGTCGAAGCAAAGAAAGAACTTTCGGAAATGGTTTGTGAGTT
CATGAAAGTGTTTCGACTCGTGGAAGATGAGCTTTTCAATGGAGCGCTTT
ATAAGATTAAGCAAAAAAGGAACAAATCAACCCGGAAGCCAGGAAATTTA
CCGGATGAAGAAATTGTACAAGATTTGAAGTCATGTCTCCTTGGAATAAT
ACGGAAAgatcaatttattttcaaacaacCAAGTGAAGTATACGTGAACG
TTAGAGACGCTGCCTGCGCTAGGTTGACCATTTTTAATGGTCGTCGTGGT
GGTGAGCCAGCTCGTTTGTTTACTTACCAATGGCAAGAAGCCATCGATGG
AATATGGCCTCGACCGGAAAAACGCGAACAATATGAAAGAGAAGTTAACA
CAAAAAACCGGATCCCGTACCAAGAAGGGAAAGGCAAGAAGCAGGTATGT
GTGTTTATCCCACCTGACACGGTTGATGCAATGATATTTTTGTGCGATGA
TAAAGTCAGGAGCGATGCTGGggtatcaagcaacaacaagtACGCCTTTC
CATCAACTGGTAACAGTTTGCTGCACTGCGAGGGCTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00036887-exon-sc0001531-1491911889:28817..29492 | TCONS_00036887-exon-sc0001531-1491911889:28817..29492 | Clytia hemisphaerica | exon |
| TCONS_00036887-exon-sc0001531-1510915933:28817..29492 | TCONS_00036887-exon-sc0001531-1510915933:28817..29492 | Clytia hemisphaerica | exon |
| TCONS_00036887-exon-sc0001531-1575043694:28817..29492 | TCONS_00036887-exon-sc0001531-1575043694:28817..29492 | Clytia hemisphaerica | exon |
| TCONS_00036887-exon-sc0001531-1491911889:30225..30700 | TCONS_00036887-exon-sc0001531-1491911889:30225..30700 | Clytia hemisphaerica | exon |
| TCONS_00036887-exon-sc0001531-1510915933:30225..30700 | TCONS_00036887-exon-sc0001531-1510915933:30225..30700 | Clytia hemisphaerica | exon |
| TCONS_00036887-exon-sc0001531-1575043694:30225..30700 | TCONS_00036887-exon-sc0001531-1575043694:30225..30700 | Clytia hemisphaerica | exon |
| TCONS_00036887-exon-sc0001531-1491911889:31116..31190 | TCONS_00036887-exon-sc0001531-1491911889:31116..31190 | Clytia hemisphaerica | exon |
| TCONS_00036887-exon-sc0001531-1510915933:31116..31190 | TCONS_00036887-exon-sc0001531-1510915933:31116..31190 | Clytia hemisphaerica | exon |
| TCONS_00036887-exon-sc0001531-1575043694:31116..31190 | TCONS_00036887-exon-sc0001531-1575043694:31116..31190 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001531 | supercontig | sc0001531:28817..31190 + |
Blast
The following BLAST results are available for this feature:
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