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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00036886 ID=TCONS_00036886|Name=TCONS_00036886|organism=Clytia hemisphaerica|type=transcript|length=1120bp
AAATGCTCGGACTATATGCGCAGTACCTAGTAATATAATTTTCTGGCACA
TTTCATGCCTCAACATACCATTCAGTTCAAGTTTCTCAAtgtctttatca
aattctttGTAAAATACACCAGTGGCACCAATTACAAAGGGAACGATCTC
TACCCTGTCCAGATTCCACATCGCTTTCAGCTCGATGGCGAGGTCCGTGT
ATTTCCTTATTTTCTCGATTCGTTTGTTAGCAATATTACTGTCGTTGGGG
ACGGCAATATCTACGATTATGGCTCTCCTTTGGTTTTTGTGCAGTATAAG
GATGTCCGGTTTGTTATGTTGGAGATGATGATCGGTTTGGATTGAGAAGT
CCCAAAGGATTTTGGTTTGGTGGTTTTCGATCACTGAAGAAGGTGTGTAA
TTGTACCATATATGGTCGTTGGTGTTTTTGGAGGAGAAGAATGTGTAGGT
ATTTGGCAAGGTCGTTATGTCTTTTCAAGTATTTAGTTGGGGCAAGGGCG
GTACAACCGGAAACGATGGGATGGATGGTTTCTTTGGATGATCGGCAAAT
ACGGCAGGAGTCGTCGTTAGTGGTGTGGTGGACATGCTTCTTGATATAAT
TGGTGGTGATTGCTTGTTCCTGGATGGCGCAAATAGTTGATTCGGTGGAG
CGTTTAAGGGTTGATGATTTCAGCCAAAGGTTTGATTTGGTATGGTTGAT
GTGGGGTTGTTGGAGTTGCCTGGAACGTTGGCCATGGGTGGTTTTTGTAG
GAGGGAGTTTGCCATGGAGTCAATAAATTGTTTCTTAACGGTTTGTTTGA
GTTGAATTTTCGAGAGAGTTTGAGTTTGCTGATGATCAATGTTTAATTCG
CCACAGTACTGACTTGCTTTAGCGTGTATAGATTTCTGGCCACGAGTAAG
CTGCCAGTTGGAGACGGCTCGGAGCAAGGGTTCATTGGTATTCTGAAGGT
AGTGGCTGAAGTTGATGATCGTCTTTTTGTAGTGGTTGGTAATGTTGATG
AGTCCATGGCCGTCGGACTTTCTTGGAAGGTAGATACGGAGAATGTCACT
TTGGTGATGCATCAGGTGGTACTGTTGAAGAATAATACGTGTGGACCTTT
CGATTGCTTCTAGTTCGGTG Run BLAST on NCBI protein sequence of TCONS_00036886-protein >TCONS_00036886-protein ID=TCONS_00036886-protein|Name=TCONS_00036886-protein|organism=Clytia hemisphaerica|type=polypeptide|length=149bp
TELEAIERSTRIILQQYHLMHHQSDILRIYLPRKSDGHGLINITNHYKKT
IINFSHYLQNTNEPLLRAVSNWQLTRGQKSIHAKASQYCGELNIDHQQTQ
TLSKIQLKQTVKKQFIDSMANSLLQKPPMANVPGNSNNPTSTIPNQTFG Run BLAST on NCBI transcript from alignment at sc0001529:19580..20699 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00036886 ID=TCONS_00036886|Name=TCONS_00036886|organism=Clytia hemisphaerica|type=transcript|length=1120bp|location=Sequence derived from alignment at sc0001529:19580..20699 (Clytia hemisphaerica)
CACCGAACTAGAAGCAATCGAAAGGTCCACACGTATTATTCTTCAACAGT
ACCACCTGATGCATCACCAAAGTGACATTCTCCGTATCTACCTTCCAAGA
AAGTCCGACGGCCATGGACTCATCAACATTACCAACCACTACAAAAAGAC
GATCATCAACTTCAGCCACTACCTTCAGAATACCAATGAACCCTTGCTCC
GAGCCGTCTCCAACTGGCAGCTTACTCGTGGCCAGAAATCTATACACGCT
AAAGCAAGTCAGTACTGTGGCGAATTAAACATTGATCATCAGCAAACTCA
AACTCTCTCGAAAATTCAACTCAAACAAACCGTTAAGAAACAATTTATTG
ACTCCATGGCAAACTCCCTCCTACAAAAACCACCCATGGCCAACGTTCCA
GGCAACTCCAACAACCCCACATCAACCATACCAAATCAAACCTTTGGCTG
AAATCATCAACCCTTAAACGCTCCACCGAATCAACTATTTGCGCCATCCA
GGAACAAGCAATCACCACCAATTATATCAAGAAGCATGTCCACCACACCA
CTAACGACGACTCCTGCCGTATTTGCCGATCATCCAAAGAAACCATCCAT
CCCATCGTTTCCGGTTGTACCGCCCTTGCCCCAACTAAATACTTGAAAAG
ACATAACGACCTTGCCAAATACCTACACATTCTTCTCCTCCAAAAACACC
AACGACCATATATGGTACAATTACACACCTTCTTCAGTGATCGAAAACCA
CCAAACCAAAATCCTTTGGGACTTCTCAATCCAAACCGATCATCATCTCC
AACATAACAAACCGGACATCCTTATACTGCACAAAAACCAAAGGAGAGCC
ATAATCGTAGATATTGCCGTCCCCAACGACAGTAATATTGCTAACAAACG
AATCGAGAAAATAAGGAAATACACGGACCTCGCCATCGAGCTGAAAGCGA
TGTGGAATCTGGACAGGGTAGAGATCGTTCCCTTTGTAATTGGTGCCACT
GGTGTATTTTACaaagaatttgataaagacaTTGAGAAACTTGAACTGAA
TGGTATGTTGAGGCATGAAATGTGCCAGAAAATTATATTACTAGGTACTG
CGCATATAGTCCGAGCATTT Coding sequence (CDS) from alignment at sc0001529:19580..20699 >TCONS_00036886 ID=TCONS_00036886|Name=TCONS_00036886|organism=Clytia hemisphaerica|type=CDS|length=450bp|location=Sequence derived from alignment at sc0001529:19580..20699 (Clytia hemisphaerica)
ACCGAACTAGAAGCAATCGAAAGGTCCACACGTATTATTCTTCAACAGTA
CCACCTGATGCATCACCAAAGTGACATTCTCCGTATCTACCTTCCAAGAA
AGTCCGACGGCCATGGACTCATCAACATTACCAACCACTACAAAAAGACG
ATCATCAACTTCAGCCACTACCTTCAGAATACCAATGAACCCTTGCTCCG
AGCCGTCTCCAACTGGCAGCTTACTCGTGGCCAGAAATCTATACACGCTA
AAGCAAGTCAGTACTGTGGCGAATTAAACATTGATCATCAGCAAACTCAA
ACTCTCTCGAAAATTCAACTCAAACAAACCGTTAAGAAACAATTTATTGA
CTCCATGGCAAACTCCCTCCTACAAAAACCACCCATGGCCAACGTTCCAG
GCAACTCCAACAACCCCACATCAACCATACCAAATCAAACCTTTGGCTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00036886-exon-sc0001529-1491911889:19580..20699 | TCONS_00036886-exon-sc0001529-1491911889:19580..20699 | Clytia hemisphaerica | exon |
| TCONS_00036886-exon-sc0001529-1510915933:19580..20699 | TCONS_00036886-exon-sc0001529-1510915933:19580..20699 | Clytia hemisphaerica | exon |
| TCONS_00036886-exon-sc0001529-1575043694:19580..20699 | TCONS_00036886-exon-sc0001529-1575043694:19580..20699 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001529 | supercontig | sc0001529:19580..20699 . |
Blast
The following BLAST results are available for this feature:
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