TCONS_00036872 (transcript) - C. hemisphaerica

Overview
NameTCONS_00036872
Unique NameTCONS_00036872
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1804

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00036872 ID=TCONS_00036872|Name=TCONS_00036872|organism=Clytia hemisphaerica|type=transcript|length=1804bp
GGTTGATGAAATAATGAGTGCCATGAAGACAGCTTTTACAGAAGCACTCC
AAGCTTCTGCTAATTCGACGCTCTGTGAGACATGCCCTATTCAAAACCTT
CACAAACTTTGTAACAACCTTGAAGGTGTGACAACGATCGCAGAGAAAGA
TACAATGGTTCACGAAACCATCAAGATTTTGTCAGATTATGAACAGCTCC
ACGTCCTCAATGAAGTCAACGAAGAAGACCCTGAATCTGACAATGAACGA
ATCGAAATTACCATTAACGTGTTGAGGGTGCTTTTCGATGACAAACAAAA
ATCCCATAAACACTCTCACAAACAACTACTAACATCTTCAATGGAAATGG
AACAGAGAGACAGACTTGGTTCATCTCAAAACTCCACCTTCTTCGATAAA
GCCAAGAAGTCTTTCACTTCTTCtttgcaaaacttttcaatgaaaaagGC
TCGTGCTAAAACCTTTTCAAATTTGGGTTTAGACTTTGATATCAAACGGC
CGTTAGCTAACACGAAACCCCTTATCACGAACGGAAATCGAACACCAGCA
GACCTCAAACCACGAAGTCGTTCTCTTGAAAATGATGCTCCCGAATTCCG
CAACAACAGCTCTCGCTTAGAATTGAACTTAGATTCTGATGCAGCCACGC
AACGACCACGAAGAGCGAGCAGTATCGAAGGAGTAGAGAAGAAAGTCCCA
CAAGTTgtgaaagaagaaaaggaagattCATTCCCTTCTTCTCATGAAAC
TTCAAATGTTCAACAACCCGTCAAGAAACGACCGTTACGACGCGAATCGT
CATGGAGACagGCCATCTACCACAGTGTTGTTGTAACGAATTCTCGCCGA
AGCTCTTCTTCTTCTATTGttACCATCACTGGGGAGAACGATGAACGAAA
GAACAAAGCGCAAAGCATCGATGTGGGTGAACGGGCTCGTTCAAGATGGC
GCAATGCCATACACAACCAAATTCTTCTTATTCgaatggaaaaagaaaac
aagaaattaGCAGcCAATATTTCCGCGACAGAGATCCGACGACAAAAGCT
TTCGTATCAAGATTTGGCCTCCTATACAGCAGAAGCGGCCCAAGCATGGG
ACGACCTCATTGGCCACAAGAACAATGAAAAAATTGACAGACAATATTTA
TTAGAGCTCGTTCGGGGCGGCATCCCGCGTGCTCGGCGCGGTGAAGTCTG
GCAATTTTTGATCAATCAGAATCAATTTCGAAAGCCAGACACGTCCGATA
AACAATGTTGGAAGGAAACACCTTACCGCACACTGCTGAAAAGAAATAGC
GGACATCAACATGCTATTTTAATAGATCTCGGTCGAACTTTTCCAACACA
CGCCCACTTCATTCCGAGACTTGGTTCAGGGCAGATTAGTTTGTTCAATA
TTTTGGCAGCATACTCACAACTTGATGATGAAGTGGGATATTGTCAAGGG
CTTAGTTTTGTGGCTGGTGTGCTTCTTATGCATATGCCCGAAGAAGAAGC
ATTTCAGAGTTTTTGCCATCTGATGTTTGAACTACAAATCAGAAGCCAAT
ACAAACCAGACATGGACGCTGTACAGCAACAATTATATCAACTTTCTCGA
TTACTTCACGACTACCATCCTAAAGTGTACGAAcatttcaacaaatttga
tgTAACGCCCACCCTTTACGCAGCACCATGGTTTCTAACGCTCTACGCAT
CACAATATCCCATTGGCTTTGTGTCACGTGTTATGGATATGGTGCTTCTG
GAAGGAATGGAAGTCATATTCAAGGTTGCGTTAGTTTTGATTGGTAACCA
TGCA
Run BLAST on NCBI

transcript from alignment at sc0001526:39675..50147-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00036872 ID=TCONS_00036872|Name=TCONS_00036872|organism=Clytia hemisphaerica|type=transcript|length=10473bp|location=Sequence derived from alignment at sc0001526:39675..50147- (Clytia hemisphaerica)
GGTTGATGAAATAATGAGTGCCATGAAGACAGCTTTTACAGAAGCACTCC
AAGCTTCTGCTAATTCGACGCTCTGTGAGACATGCCCTATTCAAAACCTT
CACAAACTTTGTAACAACCTTGAAGGTAAGCTTATAGTTGAAGTGTTGTA
GTAAATTTATCTTTTTGAAATTTTTTTAGACTCTACAAAACAATGTTTTC
CGATCTTTTCTGATCATTAGGTGTGACAACGATCGCAGAGAAAGATACAA
TGGTTCACGAAACCATCAAGATTTTGTCAGATTATGAACAGCTCCACGTC
CTCAATGAAGTCAACGTAAGATTGAGATCGCTCTTTCATTCGAAAATCAT
TTTGTACTTGTTTGAACTTACATACTGTGATTCAGTGTGAACTCTTTAGG
AGAAAACAAGATAATACGTTAAACCAAGCGGTTTTCTTTTGATTATCGAT
ATAAAACTGAATTAGATTACTCTTATGATTCCTGTGAAATATACAAAAAT
CGTGATTATATATTTCGGCTTTGAAGCATCGAGTTTTTTCTGTGAATGGC
AGTTTCAAAATTTATTGAGGGAGCTGCTAAGAATCTTGTTATTGACCGGT
ATTTGACGGAAAAACGCTACCGGTGTTCCAGTGTTGAAAGACTGTTTGTT
ACTCGTGGGAACATTTTTACCGGTATTAGAGAAATTATTGGCTGGTATAT
ACGCCGGTATTTCATGAAAAAATATTGGTATATTGTACCCTCAGAAAACC
TAACTTTAGATAGTCCCAATAAGGCTGGATATGAATTCATCCTTCGTAAT
GACAATCTTCTGCATTTCTTTTGACAGGAAGAAGACCCTGAATCTGACAA
TGAACGAATCGAAATTACCATTAACGTGTTGAGGGTGCTTTTCGATGACA
AACAAAAATCCCATAAACACTCTCACAAACAACTACTAGTAAATATCTTC
TTCATTCTTATCGCATATAGGTTACCTAAATATTTGTTAACCTTTGCTAT
AGGTCTAGTCCGGAGATTGAATCAATAGTTTGCTATATTATTCAGTCTGG
AGATCCCATATGACAGTCTTTTGCTACGTAGTCCAACAGGCTATGTCTGA
GCCGGTCTTTTGAATTCTTCTTTTAAGACATCTTCAATGGAAATGGAACA
GAGAGACAGACTTGGTTCATCTCAAAACTCCACCTTCTTCGATAAAGCCA
AGAAGTCTTTCACTTCTTCTTTGCAAAACTTTTCAATGAAAAAGGTATAA
ATACTAGTTTGGGTGGTTCTTCTTTAGAAATAACTTGATTAATTATAAAA
GTATTTTAACTGTCACAACGAGTCTTGATTTTTCGTTCTTTTGGACACAG
TCCATTTTATTTTCGATTGCTGATTTGTTTTTCTAAGTTACTTTGGAATA
CAAACTGTATTTTGATCGTTTCCTTTCCAGAAACCTTTCTTATTAATAAC
CCTTCGCCCACGCACTCAAAGTCACTTCTCACGCACACTCATGCACGCAC
ACACAACTCTAACAAACTAACATATCGTCGTAATATTCATCTTGTAGGCT
CGTGCTAAAACCTTTTCAAATTTGGGTTTAGACTTTGATATCAAACGGGT
AAGACTTTCGAGATTTTCTCCTTCTATTTTTTGTTTCCAGTGATGAAAAA
GCTGTTTTTAATTTCTAATATTGCTAATGTTATGTTCAGATTAGACATGA
TGAAAAAATTAATTTGTTAATCAATGGTTTTTTTCAAACTTTACTAGGAT
ATCTAAAGCACGATTTCTTTGATTATGTCGAGCAAAACGATCTGATATAT
ATAAAGAATAAGTAGAAACAGCGTAACTTTATTTAGCATGCTTATAATAC
CCTTTCCTTTAATAAGGATCTAGCTTGAATGTGAAAGGTCATGATTTGGT
GCATGTTCCCAATCTCTATTATATAATTGTTGTGCTTTATTTCTAAATTT
TGAATAATTGAATAAAAAATCAAAAGAATTGCTTTGATGATTTGTTTTGT
TGCATGCAGCCCTGAAGCCCTGGAGAATATTTTCCATTAACTGACCTGAG
CAAAAACAAAACGCCTCTTTCACGTGATTGACCGAAATATTGTAATTTGA
TATCTGATAAAATAAGTCATTTTTTTATGTCTTGATGTTTTCAGCCGTTA
GCTAACACGAAACCCCTTATCACGAACGGAAATCGAACACCAGCAGACCT
CAAACCACGAAGTCGTTCTCTTGAAAATGATGCTCCCGAATTCCGCAACA
ACAGCTCTCGCTTAGAATTGAACTTAGATTCTGATGCAGCCACGCAACGA
CCACGAAGAGCGAGCAGTATCGAAGGAGTAGAGAAGAAAGTCCCACAAGT
TGTGAAAGAAGAAAAGGAAGATTCATTCCCTTCTTCTCATGAAACTTCAA
ATGTTCAACAACCCGTCAAGAAACGACCGTTACGACGCGAATCGTCATGG
AGACAGGTTTGATGACGTCATTTTCTACATGCTAACACTTAGTTATTTTG
AGATGAATTTATCCCATATTCTTTTTCTTACTCGTGAAAGTAAAAACCAC
AAGAGAACCTACATCTTTTAAAACCAACTGAAAAACTTTCTCCACTTCTT
GATAGTTACTCGATTAACTTTCTTCTTGTGCGCTCTCAGTATTGATTTTT
CAAACTTTGCACAATTTTAACATTTCAAGCTTGATATTTGATAAAGTTCA
ACTTTTATGTTTGCTCTACATACTTCATATGTATTCTCGTTCTCTCTTTC
ATGTTTTAGGCCATCTACCACAGTGTTGTTGTAACGAATTCTCGCCGAAG
CTCTTCTTCTTCTATTGGTAGGTTTTTATTTTGTTCCTCTTTCTTTAGCT
AAACTTTAAAGGCATTAAATTACGATATTGCTTAATTAAAAGAAACAGTA
CTTTTTTTATGATCAATACCGGTGGTTTCCATGCACCATTGATGCAATCA
TCAGTTTGAATATCATGCTTTAGTAACTTGCAGTAGTATCGAGCACTCTA
ATCGTGACGAGACCATTTAAAAGATTCGCCATAATACATGTATAAAAAAA
TTGATTTCGTGATACGGAATGAGTTTATCATATTTTGAGGTTTGAATTTT
GTTGAAAAATTACACATCTTTTATACGCAAGTGGATGGCCTGTTAAATTA
GTACTGTCTGTCTAACCTTCAAAATGAAGACGTCCCTTTGGAATGAGGAT
GGTTTTTGTCAAGACAAGAAACGTTATGCGTCGCTCCCCGCGTGTACAAA
AGGCCTTGATTGCATTTTGATTACATTCTCGTAATTTGTGTTCAATATAA
TAATCACATGCTTAAGAAACGACGGTCCGCCTCTTATACATTATCTCCTT
CGAAAGATTGGATAAGAAGTTTGAAATAGTCAAGGTCACACACTTTACTC
ATTTGTTGTCCATTCATGGAACATTCGTGAAAGAGTCAGTTCGATGTTTT
GACGGGATGGGCCTCTTGCGTCGTCCGTCGTCACTTCTGTGTTAATAGAA
CAGTCTATGACAGTTAAAAAATTTTAAACAGTCAAGCAATATATTTCGGT
GGTATCACCATTTTCAAGCTTATAAAAATACAAGTGTTCTATCAGATACC
ACCGAAATATATTGCTTGACTGTTGTTTTTTTAATCTTAAACTTTGAAAA
ATGGCTTCTATGATAGTGTTAAATGATATTTCAACGGTTTTGACTTTTAG
TATTTATTCATTGGTTGGTTTGAAATTTTATTGCGTTCGATGCTAAAATT
ATGTCATCTCTTCTTATCATATTTCGTTTCGATTAAAATCTTATTAAACT
TAGACTTAATGTAGTATCTGTTGATTAGAATATATCATCATCTTTCACTG
TTATACATGAGTCGCTTCATCATTTCATTTCATGCAGAGTTCATAAGCGA
GTCGACCTCGTCATTAGTGTTTTTACTATATTTGGTCAAATGAGATTCAC
CACTTTTTCTTTTTAATGACTTCACAAACAGGTCTTTTGTTTGGGTTTGT
GTGGAGGAATTGATTTCGTTCCTGGACGGTTAACGTTTACTTCCGCATAT
CCGAAACTTCCTTTCTTTTCTCAACCTTTTTTTTACTTTATTTGTTGATT
TTGAATATTTATGTTAGTTCTGGTTCATTTGATGTTGACCCTGGGATCAA
GTTTCATACTCATCAGAATAATGACGTCACACAACGTTTCATTTTATCTC
GATGTGCAGAGGCAGACTTCTATTTTTCTATAATTTAAAAGCGTAGTGTA
ACAAATTATGGAAATTACTTTTGGTTAAAATACCCACGCATGGAAGACAT
GTTTTTCACAACCCTATATCATATCTTTTCTCCTTCCCGCGTTTCGATTT
CTTTCTCTGTGCATGGAGATTTTGTATTTCGCCACATGTTCTTAATGACT
TCCTAATTATCTTAACGAACTTTCTTTTGTGTTAGATATGAATCTGTTTT
GTTGCACAAACGAAAAACCCGCAAAGACGTGTGTTGAACAAATGACCAGT
AATCACCTTTTATCGATGAACCAAATTGATTTTGACGTGTTTTGGATAAA
GGTATTAAGATGTAGGGAAGTGTTCGAATGCAGACGTTATTTGAAAAGGT
TCTACCTGTCTCATTCGACAATTTTGTTTTATTCGGGTTGAATGAAACCA
TTTTGTTGTGATATTCGAATATTTTGCCCGTCGTTAATGTCGCTTTTCTG
TCAGATCTTTTTTGATTGTAGACCGAAAGACCTTCCAAAGAGAAATGGTG
CTTTTTGGGATTTTATATCCTGCTAAGCTCACTCTTTGATGTTCTTGGAA
AACCAATTTGCTTTTGACCAATTTGACCTTTCTCCCTTGAAGAAGGGATT
TCATGTAACTGCGGTCTTTTATTTCTGAAGGTTTTATAAAGAACGTCATT
GAGGTCAAAATAAAGCTCACGTATATATAAGGCTCTTTTCGTTGTCGTGA
TTATTTTTGTGGAAAAATATCTGTGAGTTTCTCTTCTTTCTTTTCTTGCT
TCTCTGATTGAATTGGATTTTGGATGCAAATTTGTACATTAGCGCAATTT
CTTTAAATCGTTTAGTGATGTAAATCTTTGCCATCTCGTTATCTACAGTG
ACGCATGTTTTTAATTTTGGTTTTAGCAATTTTAAAAAGATGGTTTAAAC
ATTGAAAGTTTATGTTACAATAAATTTAAAGAGAACTTTTGATGCTGTTG
ACATAATATTGTACGTGTTATAACTGGTTGGCTTCTGTTAACTTGTACTA
AAATTTCAAGAGTTGATCACCCTGTGATGTCTCATTACATAACTCTGTTT
TCAGCGATTAAAATTTTCCTTGAATTTCTCACAGTGAATTTCTAGCTTAA
CATTTTAAAAGATATTACAATAAAGTTGAACAACAACACAACAGTTCTCA
ACTTCAGTTGAGCTATAATCTGAGAATGTCTGTATGTATGTATGTATGTA
TGTATGTCTGTATGTATGTCCGTCCGAAAACTTTAGGGCNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNATATTTGCTACCTAATACTAAATATT
TGAAATGTTACAATTGGGCCTTCTAATAACGGGAAAATCTGAAGTTGAGC
CCAGTGCGGTGCGCACGTTCGACTATGCTAAGATCTCACTGAATGACGTC
ACGTTTTCTAAATTCGTGAAACAAAAACAAAACAAAAATATCACGGAGTG
GTATATCTTATTATAGAAACAGTATTTTGATGTCGTGATTTTCATTCGAT
ATTTTGATACAGTTGGCGCGTCATTTTGCTTCTAGAGATTTTGTTACTTT
TTTGTTATCTTTAATTGCTATACACATTGATCGATCAATCAATTGACCTT
CCTGAACTCTTGCAATATTTTCTGGCACGTCAACAAAAACTTTTGGCTTC
GATGAGAAGGCTCATTAAAAAAGTTGGACGTTGCTTTTATTGTTTTGTCT
GAAGGAGGTTAGAAGTGAGCCTTCTTGTTCTTGCGGTGAAAATCTCCTCG
ATCTTTCAAAAGTAGATCCTTTTGTCTGAGGTGAAGTTTCGAAAACCTCC
TTCTAGTCTATTTGCTCTCCGCGTGAAGTTTAAATTCTAACATTTATTTT
TCTACATTATATTTTCTCTGTTGTAATAGCTCATAAGTTTTCTCCCTTAA
CGATTTGATGACTGAAGGGAAGTTTATCCGCTGTCACATTCAATTGATTG
TTTTTATCAGGAAGCATCATGTTAATTGTCTGAAATGACTTCACCTCTTC
TCTTCTCTTCTCTTGATATTACACTCAGTTTATTTCTCTCTAGTCATCGC
GCAGTGCGTCGTCGTGTTGATTGCGCATGCGTCGGTTTGATGGAAAGAAA
TAATATTTGATTATTATCAGCATTGTTGTGTAAATAAGAAAACAAGTATT
AGTAAAGCATCTGTGTTTTAATAACAGACTACAAATTAATCAGTACGAAA
GAAAATTAAAAAGAAATATATCATTTAATTGAACGAGAGAGACGATGGTG
ATCACGATAAAAGTGGCGGAAAAAATGATCGAACGAAAACGAAGTTTGTT
CAAGCGTTTTGTAGCAGATTCTGCCAAAACTACCCAAGTAAATGTTATCA
AGAAATTCGTTAACAGTAAGCATTTTCTCGCCTTGTTAGTATTTGGATTA
TAGATCTGAATTCGTGGTAGAGGTGACTATCTCCAAAAATTCTTCAGAGG
CCAGAAATTCTTCGTTTTATTCTTTCTCTCAGTTTAAACGGGGAGAGTTG
TGACCTTTCGTTCACCTTCGGAAAATGGCTTCTGATGAGGTATTACTTCA
ACAGGGCTATCAGAGGTCATAAATTCGGTGTGTATGCCAAAATTTTGATA
TTGTTTTTAAGTGATCGCAATCTTAATTAAAAAGTAAGGATAATTAAACA
AAGTTTGTTTGATTCGGCATGATGATCATGTATTGTACCTTAAGTGGATA
AATTTTCGCGTGGACTTTTTTTCGCGAATCGAAAATCGAAAATTTTCGCG
TGGACTTTTTTTCGCGAATCGAAAATCGAAAATTTTCGCGTGGACTAAAT
TTCGCGAATCAGCCTCTTTTTCACCTAATTTCTTTCATTTTCCTAGGGGT
TTTGGCAAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTAAAT
TTTTCGCGTGGACAAAATTTCGCGAAAATGGCCAAAATACGCGAAAATCG
CGAAAATTAATCCACGCGAAAATTTATCCACTTAAGGTATATTAAAGCGC
ATTTGAGACGATTGCAAACATCTTTTCATTGCATCACGATCCTCAAACAT
TGAGTTCGTCTTGTTTAAGTAACAGATATTTTTCATCAGAACGAGAAAGA
ACTTGAAGGGAGAGAACTTTCTCGATATCAGAGAAAATAAACGCTTTCTG
TATAATGTGATGCCTCGACCACGGTCAATTTCGACTTTGTTATTATATTC
AAAACAGCTTGCATCAAGTAGGTTGTTTCTAAATAGAACATCGTTTCCAT
GCCAGCTGTGTATTTTGTATTATAGGGTTTCCTTTCTTTTTTTCACTCAC
TTCTGGTGGGGGATGTCATTTTTGATGTGATTCAAGTCGCGGGTTCCATC
CTTTTTTATTTATAAATTGAACTATTTTGACTGCTTTTTCAAACCAATAG
TTTTTGTAAGATAGAATTGTCACATTTTCTGACCATCTTTCTATTTTGTT
TTTAGTTACCATCACTGGGGAGAACGATGAACGAAAGAACAAAGCGCAAA
GCATCGATGTGGGTGAACGGGCTCGTTCAAGATGGCGCAATGCCATACAC
AACCAAATTCTTCTTATTCGAATGGAAAAAGAAAACAAGAAATTAGCAGG
TACATTTATTCGTCACATAACTTTCTCAGACATAATTTCAGCGAGACATT
ATTGAATAGGCGTTCACTCGCAGGTTCTGCCTCTCAATTTGATTTAGCCT
ATACTTTTAGAAGATGTCCCACACAATATGCACTTTTTTTGCAATTATTG
ATTTAAATCTATTTTTAGCCAATATTTCCGCGACAGAGATCCGACGACAA
AAGCTTTCGTATCAAGATTTGGCCTCCTATACAGCAGAAGCGGCCCAAGC
ATGGGACGACCTCATTGGCCACAAGAACAATGAAAAAATTGACAGACAAT
ATTTATTAGAGCTCGTTCGGGGCGGCATCCCGCGTGCTCGGCGCGGTGAA
GTCTGGCAATTTTTGATCAATCAGAATCAATTTCGAAAGCCAGACACGTC
CGATAAACAATGTTGGAAGGAAACACCTTACCGCACACTGCTGAAAAGAA
ATAGCGGACATCAACATGCTATTTTAATAGATCTCGGTAAGCAAATCTTA
TTTTAATTCGCTGACTTTTCAAGTTTTCGGGAATAAGCTTGTCGTTATTT
TTTTACTCGATCAACTTTCGCTGCCCGACTTGTTCATAGAAATTGGCTAT
TTGTTATTCAACCTTCGTTTATTCCACAATGATATACGATTTTACTTGGA
CGATCCCTGCCACACTAACCAACCTTAATTGTCGACAACAATTCATTACT
TTTAGGTCGAACTTTTCCAACACACGCCCACTTCATTCCGAGACTTGGTT
CAGGGCAGATTAGTTTGTTCAATATTTTGGCAGCATACTCACAACTTGAT
GATGAAGTGGGATATTGTCAAGGGCTTAGTTTTGTGGCTGGTGTGCTTCT
TATGCATGTAAGTTAAAATGGTTTTCTTTCACTCTAATCTACGATGTGTA
GCTTTAGGTGTGTCGTTCCCATTTTATGACAACTTTTTTGTAATGAGTAT
TTGATGAATTCGTTTCAATTAAGGTTTATTAAGTGGAGACGATTTTGTTA
TTTTAGATGCCCGAAGAAGAAGCATTTCAGAGTTTTTGCCATCTGATGTT
TGAACTACAAATCAGAAGCCAATACAAACCAGACATGGACGCTGTACAGG
TAGCAACTAATTCTTTTCATCTTCTGCAGACGTATAGGATTTCCTTTACT
AATGAGCTCGTGCTAAATTATGATTTTGTGTTTAATAGTTTCAAATTTTC
CATGAAAGAAAGTATCCTTTTCATTAACGTAATGAACCATTAAGTTCTGT
AGTAACGGGAAAACCTCACCTGCTTCAAGCGAAGGGTAATTCTGGGGAGA
CATTCTAGTTGTGTGCTATTAAACGGTTTTATCGAATAATGAAAAGTATT
ATATCAAGTTTGATGCTATTATTTTTGGTGGCCCTGAAACTGTTGGCTGG
CAAAGAGAAAAAAAACACTGGAATTCCCATTATTAAGACGGTGATTTCAT
TTATATTTTAGCAACAATTATATCAACTTTCTCGATTACTTCACGACTAC
CATCCTAAAGTGTACGAACATTTCAACAAATTTGATGTAACGCCCACCCT
TTACGCAGCACCATGGTTTCTAACGCTCTACGCATCACAATATCCCATTG
GCTTTGTGTCACGTGTTATGGATATGGTGCTTCTGGAAGGAATGGAAGTC
ATATTCAAGGTAACATCTACTTGTGGAATAGTTTATTGATTGATAAAAGA
AATTGGTAGTCCTCAATCAATAATATTTTCAGAACTGGCTCGATATAGAC
CTTATCGGAGTTTTTTATTTTTCTAAAACAACGATGCATTGTGGGATCGT
TTTGGGAGTATTACAATAAAATTCCCTCGAGAAATTCCTAAGAGATTTGT
AATATTGTAATACCCCCGAAAAAAAAAAAAACTCCGATAAGATCTATTGG
GATCATTTTCCAAGGGCTTCGTTTTCAGCGCTCGACTAAAACACCAATAA
GATAACTTTGTTATAAGAAAATAAATTTTAGAAGATTTTTAACTTGCAGA
TCAAGAATGAAGCCCCAACAGAGTGCAAAGTAATAAAGGAAAATAAATAA
TGCGAAAAAAACATGGCTAAACCTTTTCATCTTTTGTTTTCAGGTTGCGT
TAGTTTTGATTGGTAACCATGCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_021774XLOC_021774Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00036872-exon-sc0001526-1575043694:50023..50147TCONS_00036872-exon-sc0001526-1575043694:50023..50147Clytia hemisphaericaexon
TCONS_00036872-exon-sc0001526-1575043694:49833..49927TCONS_00036872-exon-sc0001526-1575043694:49833..49927Clytia hemisphaericaexon
TCONS_00036872-exon-sc0001526-1575043694:49210..49320TCONS_00036872-exon-sc0001526-1575043694:49210..49320Clytia hemisphaericaexon
TCONS_00036872-exon-sc0001526-1575043694:48904..49020TCONS_00036872-exon-sc0001526-1575043694:48904..49020Clytia hemisphaericaexon
TCONS_00036872-exon-sc0001526-1575043694:48550..48600TCONS_00036872-exon-sc0001526-1575043694:48550..48600Clytia hemisphaericaexon
TCONS_00036872-exon-sc0001526-1575043694:47692..48003TCONS_00036872-exon-sc0001526-1575043694:47692..48003Clytia hemisphaericaexon
TCONS_00036872-exon-sc0001526-1575043694:47331..47388TCONS_00036872-exon-sc0001526-1575043694:47331..47388Clytia hemisphaericaexon
TCONS_00036872-exon-sc0001526-1575043694:41799..41942TCONS_00036872-exon-sc0001526-1575043694:41799..41942Clytia hemisphaericaexon
TCONS_00036872-exon-sc0001526-1575043694:41312..41629TCONS_00036872-exon-sc0001526-1575043694:41312..41629Clytia hemisphaericaexon
TCONS_00036872-exon-sc0001526-1575043694:40941..41092TCONS_00036872-exon-sc0001526-1575043694:40941..41092Clytia hemisphaericaexon
TCONS_00036872-exon-sc0001526-1575043694:40699..40791TCONS_00036872-exon-sc0001526-1575043694:40699..40791Clytia hemisphaericaexon
TCONS_00036872-exon-sc0001526-1575043694:40139..40336TCONS_00036872-exon-sc0001526-1575043694:40139..40336Clytia hemisphaericaexon
TCONS_00036872-exon-sc0001526-1575043694:39675..39704TCONS_00036872-exon-sc0001526-1575043694:39675..39704Clytia hemisphaericaexon
TCONS_00036872-exon-sc0001526-1510915933:50023..50147TCONS_00036872-exon-sc0001526-1510915933:50023..50147Clytia hemisphaericaexon
TCONS_00036872-exon-sc0001526-1510915933:49833..49927TCONS_00036872-exon-sc0001526-1510915933:49833..49927Clytia hemisphaericaexon
TCONS_00036872-exon-sc0001526-1510915933:49210..49320TCONS_00036872-exon-sc0001526-1510915933:49210..49320Clytia hemisphaericaexon
TCONS_00036872-exon-sc0001526-1510915933:48904..49020TCONS_00036872-exon-sc0001526-1510915933:48904..49020Clytia hemisphaericaexon
TCONS_00036872-exon-sc0001526-1510915933:48550..48600TCONS_00036872-exon-sc0001526-1510915933:48550..48600Clytia hemisphaericaexon
TCONS_00036872-exon-sc0001526-1510915933:47692..48003TCONS_00036872-exon-sc0001526-1510915933:47692..48003Clytia hemisphaericaexon
TCONS_00036872-exon-sc0001526-1510915933:47331..47388TCONS_00036872-exon-sc0001526-1510915933:47331..47388Clytia hemisphaericaexon
TCONS_00036872-exon-sc0001526-1510915933:41799..41942TCONS_00036872-exon-sc0001526-1510915933:41799..41942Clytia hemisphaericaexon
TCONS_00036872-exon-sc0001526-1510915933:41312..41629TCONS_00036872-exon-sc0001526-1510915933:41312..41629Clytia hemisphaericaexon
TCONS_00036872-exon-sc0001526-1510915933:40941..41092TCONS_00036872-exon-sc0001526-1510915933:40941..41092Clytia hemisphaericaexon
TCONS_00036872-exon-sc0001526-1510915933:40699..40791TCONS_00036872-exon-sc0001526-1510915933:40699..40791Clytia hemisphaericaexon
TCONS_00036872-exon-sc0001526-1510915933:40139..40336TCONS_00036872-exon-sc0001526-1510915933:40139..40336Clytia hemisphaericaexon
TCONS_00036872-exon-sc0001526-1510915933:39675..39704TCONS_00036872-exon-sc0001526-1510915933:39675..39704Clytia hemisphaericaexon
TCONS_00036872-exon-sc0001526-1491911889:50023..50147TCONS_00036872-exon-sc0001526-1491911889:50023..50147Clytia hemisphaericaexon
TCONS_00036872-exon-sc0001526-1491911889:49833..49927TCONS_00036872-exon-sc0001526-1491911889:49833..49927Clytia hemisphaericaexon
TCONS_00036872-exon-sc0001526-1491911889:49210..49320TCONS_00036872-exon-sc0001526-1491911889:49210..49320Clytia hemisphaericaexon
TCONS_00036872-exon-sc0001526-1491911889:48904..49020TCONS_00036872-exon-sc0001526-1491911889:48904..49020Clytia hemisphaericaexon
TCONS_00036872-exon-sc0001526-1491911889:48550..48600TCONS_00036872-exon-sc0001526-1491911889:48550..48600Clytia hemisphaericaexon
TCONS_00036872-exon-sc0001526-1491911889:47692..48003TCONS_00036872-exon-sc0001526-1491911889:47692..48003Clytia hemisphaericaexon
TCONS_00036872-exon-sc0001526-1491911889:47331..47388TCONS_00036872-exon-sc0001526-1491911889:47331..47388Clytia hemisphaericaexon
TCONS_00036872-exon-sc0001526-1491911889:41799..41942TCONS_00036872-exon-sc0001526-1491911889:41799..41942Clytia hemisphaericaexon
TCONS_00036872-exon-sc0001526-1491911889:41312..41629TCONS_00036872-exon-sc0001526-1491911889:41312..41629Clytia hemisphaericaexon
TCONS_00036872-exon-sc0001526-1491911889:40941..41092TCONS_00036872-exon-sc0001526-1491911889:40941..41092Clytia hemisphaericaexon
TCONS_00036872-exon-sc0001526-1491911889:40699..40791TCONS_00036872-exon-sc0001526-1491911889:40699..40791Clytia hemisphaericaexon
TCONS_00036872-exon-sc0001526-1491911889:40139..40336TCONS_00036872-exon-sc0001526-1491911889:40139..40336Clytia hemisphaericaexon
TCONS_00036872-exon-sc0001526-1491911889:39675..39704TCONS_00036872-exon-sc0001526-1491911889:39675..39704Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001526supercontigsc0001526:39675..50147 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.69466	2.08308	1.79099	1.64471	2.53869	5.08908	1.14634	2.56634	1.8005	2.07953	1.76433	1.61544	0.972128	2.07933	1.0524	1.81324	9.26627	8.31445	0	0.0142854	3.37047	2.15341	3.84458	4.94904	10.5841	9.24083	5.67214	4.36748	8.18925	6.15553
Blast
[Close]
BLAST of TCONS_00036872 vs. Swiss-Prot (Human)
Match: TBCD1 (TBC1 domain family member 1 OS=Homo sapiens GN=TBC1D1 PE=1 SV=2)

HSP 1 Score: 327.405 bits (838), Expect = 2.687e-98
Identity = 156/290 (53.79%), Postives = 206/290 (71.03%), Query Frame = 2 
Query:  938 RSRWRNAIHNQILLIRMEKENKKLAANISATEIRRQKLSYQDLASYTAEAAQAWDDLIGHKNNEKI--DRQYLLELVRGGIPRARRGEVWQFLINQNQFRKPDTSDKQCWKETPYRTLLKRNSGHQHAILIDLGRTFPTHAHFIPRLGSGQISLFNILAAYSQLDDEVGYCQGLSFVAGVLLMHMPEEEAFQSFCHLMFELQIRSQYKPDMDAVQQQLYQLSRLLHDYHPKVYEHFNKFDVTPTLYAAPWFLTLYASQYPIGFVSRVMDMVLLEGMEVIFKVALVLIGNH 1801
            R  W+ AI  QILL+RMEKEN+KL A+ +    +R KL Y+++     E    W+ ++      KI  D + +   V  G+PR  RGE+W+FL  Q   +    S KQ  K+ PY+ LLK+ +  QHAILIDLGRTFPTH +F  +LG+GQ+SL+NIL AYS LD EVGYCQGLSFVAG+LL+HM EEEAF+    LMF++ +R QY+PDM  +Q Q+YQLSRLLHDYH  +Y H  + ++ P+LYAAPWFLT++ASQ+P+GFV+RV DM+ L+G EVIFKVAL L+G+H
Sbjct:  721 RELWQKAILQQILLLRMEKENQKLQASENDLLNKRLKLDYEEITPCLKEVTTVWEKMLSTPGRSKIKFDMEKMHSAVGQGVPRHHRGEIWKFLAEQFHLKHQFPS-KQQPKDVPYKELLKQLTSQQHAILIDLGRTFPTHPYFSAQLGAGQLSLYNILKAYSLLDQEVGYCQGLSFVAGILLLHMSEEEAFKMLKFLMFDMGLRKQYRPDMIILQIQMYQLSRLLHDYHRDLYNHLEEHEIGPSLYAAPWFLTMFASQFPLGFVARVFDMIFLQGTEVIFKVALSLLGSH 1009
The following BLAST results are available for this feature:
BLAST of TCONS_00036872 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TBCD12.687e-9853.79TBC1 domain family member 1 OS=Homo sapiens GN=TBC... [more]
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