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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00036836 ID=TCONS_00036836|Name=TCONS_00036836|organism=Clytia hemisphaerica|type=transcript|length=3663bpRun BLAST on NCBI transcript from alignment at sc0001522:24785..46020- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00036836 ID=TCONS_00036836|Name=TCONS_00036836|organism=Clytia hemisphaerica|type=transcript|length=21236bp|location=Sequence derived from alignment at sc0001522:24785..46020- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00036836 vs. Swiss-Prot (Human)
Match: VWDE (von Willebrand factor D and EGF domain-containing protein OS=Homo sapiens GN=VWDE PE=2 SV=4) HSP 1 Score: 179.104 bits (453), Expect = 2.773e-45 Identity = 164/597 (27.47%), Postives = 264/597 (44.22%), Query Frame = 2
Query: 188 GQDIPCNPDVYNVFDSTTIFQR-SSGNIVPSNSRSFICDDGINHDVWQRFISPAGSEMPTTCPPQFACGTRYPVWLN----DTHPTSYNQATNVKACINVEGV------CCLQEIQIQAARCRDNVKNEDFFVYKLAQLTLACPVGYC---IGKEVRCPAGQTSTTGFTPCHDEF-----PKQRSLPKVTVDVHNSRIRFTCDFEIETIRANNRYNVTWYSTTGTAAPKILKVDPLENDQTKSFLRNENTLRTINERAFCLNQNIFCEVRSFFAGSED-KSDFKRSNVFYAGIKISPTNIVISEQGSAQDVTLTSTVPIVCNEGSPT---CGVNIRINQ-NDKNAKIEDRCSLRFKRGDVTKKMNVA------------ATRDFIDDNDRLLKIKFNVPRHANPLDWYCTSPLPD-VTLTAKDAPTRQCKTTGDPYIYTFDHNWFPHYKVGDYILVKSSARVFEVHARVFEC---HTSVSCNCGVAAREGDDVMVVDMC--QTGKAPIIKFASTIEPQQGSRIERVPGGKTFILNFPSGARVTFVYRNPSSDIIVSLPPDDYQNTRGLCGTWNGNTNDEFTSASGQVIPGRWSSSIA 1852
G+ C+P + S R S ++ S + ICD ++ ++ I +EMPT C CGT+ P+WL+ +T P S + + AC + + CCL +I + C + F VY L Q T C +GYC I P G T C + P P+V V++ SR+ C F++ + + +++ W + + +K + + ++F E L IN R L IFC FF + +S S F+AG K+ P ISE G + + STVPI+C+E S C +++++ + +L D+ + + A A DF D DR+ I V + D+ + +PD + + KD PT C T DP+I TFD + ++K G ++L KS +R FEVH R ++C H VSCNCG A+EG D++ DMC Q ++ F + + + +I G+ + F SGA + + + P DY+NT GLCGT++ N ++F +G I +++ +A
Sbjct: 18 GEAQECSPGGHQFLRSPYRSVRFDSWHLQQSAVQDLICDHSLSPGWYRFLILDRPAEMPTKCVEMNHCGTQAPIWLSLRDSETLP-SPGEIKQLTACATWQFLFSTTKDCCLFQIPVSVRNCGN------FSVY-LLQPTQGC-MGYCAEAISDARLHPCGSDETETGGDCVRQLAASLPPPPAGRPEVLVELIESRLFCRCSFDVPATKNSVGFHIAW----SRLSSQEVKEELTQETTVQAFSLLE--LDGINLR---LGDRIFCSASVFFLENPHVQSVAIESQEFFAGFKLQPELSTISEDGKEYYLRIESTVPIICSEFSELDQECKISLKLKTIGQGREHLGLNLALSSCHVDLLQTSSCANGTCSHTFVYYTAVTDFSRDGDRVSNI---VVQPIVNEDFLWNNYIPDSIQIKVKDVPTAYCYTFTDPHIITFDGRVYDNFKTGTFVLYKSMSRDFEVHVRQWDCRSLHYPVSCNCGFVAQEGGDIVTFDMCNGQLRESQPYLFIKSQDVTRNIKISESYLGRKVTIWFSSGAFIRADLGEWGMSLTIRAPSVDYRNTLGLCGTFDENPENDFHDKNGMQIDQNFNNYVA 593 HSP 2 Score: 124.405 bits (311), Expect = 2.170e-28 Identity = 115/448 (25.67%), Postives = 182/448 (40.62%), Query Frame = 2
Query: 2249 SGITQQQAEQSCNRALKESKSGKICLQVIPTLDITPFLQQCIDDTKVLDDSRTSIISAVAAMMXXXXXXTLRNVTLWTADDNGNLQPPQAVGDTL----CPSDCSGNGGCVNSTCVCNAGFLSVDCSIKEGDPPVLERVASDGLCDIRKQDCLRTRVIGQNYVESDKLACGTKKLKV---EGLILEGRSTSNMLSSKSDLLSFRDLSCEIPEQHLPLVDLDFSPVRPGRPVGGVSIQLSNDGETFSNESSNYIAYDSKCVECN--STTDCRWKVDSCRVNNYCIAVGEPNFEDWCQICR---GNNTFTERTDNVAPIFRP-RSTQKAFHDHTLRFTVPVTDPEQKILKFNFVGRTPDNMEISSAGVITWTAAKENKTYNVRIRATDICGTFSEATYMFESVFCPCEKLNGAKC----------GAYPSVNCQCPKGCMGKNCTQAIKG 3523
SG+T+ C L S G++CL + + ++ C+ D + DD S A A++E E+ + + ++ G ++ D L CP+ CSGNG C+ C C+ F S DCS P + + + G CD++K +C+ RV G+ + E + C KL+ E + E T + + R + C++P + D + G+P G +++SNDG FSN I YD C C C K + C ++ C G+ N C ICR T++ +N P+ + + + F+ + DPE + F + P+ +SSAG+ W T + +R D C +E E C+ LNG C G Y C C G G C I G
Sbjct: 799 SGLTEYSTLTLCQETLANSSIGRLCLAFLGK-RLDSVIEMCVKDVLLKDD--LSWAEAGVALLENECEKRIVEEGKYNTEEYGT-----SIEDILSVLKCPNLCSGNGQCMEWGCACSPSFSSYDCSDSYDKAPEITELGNAGFCDVQKYNCMMVRVFGKGFKELPSIKCEVTKLQYNSSEWMPGEPIYTQTVFHNS------RAVDCQLPTD---VQQFDTMDLVGGKPTGKWQLKVSNDGYKFSNPKITVI-YDGACQVCGLYKNDSCTIKENVCIIDGLCYVEGDKNPTSPCLICRPKISRFTWSFLENNQPPVIQALQDKLQTFYGENFEYQFVAFDPEGSDIHFT-LDSGPEGASVSSAGLFMWKTDLLT-TQQITVRLNDDCD--AETRVTIEVTVKSCDCLNGGSCVSDRNFSPGSGVYL---CVCLPGFHGSLCEVDISG 1221 The following BLAST results are available for this feature:
BLAST of TCONS_00036836 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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