|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00036832 ID=TCONS_00036832|Name=TCONS_00036832|organism=Clytia hemisphaerica|type=transcript|length=1150bp
TGACAGCTCATCGAGTGCTCACCTGGAAGCACAAACCTCAAACTTGTCAA
ATGAAGACTTCTATGAAATTATGGAGATATTTTCCAGATATCTTAAAAGT
CGGTCTGCTGGCAAGAAAAGCGAGAAAAATGCAGAGGACGAAAAAGCACA
AATAAAACGGCTGGCTGAGTGGTGCTCAGAAAATCACGAGTTATCTTATC
GAAACTTGCTGAATCTCGAAAGAGTTCAAGAATGCTACCTCGATaaaaaa
tccaaagaaaaaaaacaccaacCGGGCACTGTAAAATCGTACCTTTTGTC
ACTCACGCACTTCATTGACTTTCTTTCTCGCTCTATTGTCCACCCTAGAG
CTCCAAATGTTGTGAGTGTTGCATCTGATTTGACAATTGAACACCTTCAT
ATTCTGAATACCGAGGTTTCAAAATGGAGTGAATCTCTAAAGGGGGAGAT
TAGACAGAGGGAAATGGAAGTAATGTGCGAGGATGGTGAAAAAGTGATAA
CGAAGGAAGAATTTCAAGAGGCACTCAAATCCGAACACTGTATCGCGGTT
CGGAAATGTATAACTAAGATTGGAGAGAGTTTTAAGGATAATCCGAAAAG
CTACAATACAAAAAGGGATACATTCACTAACTGCCGTGATGTTTTGTTTC
TCATTTTATGCGTGCCAAATATTGCCAGATCAGGAGCGGTGGCTAATATG
ACAATGCAAGAGTACGAAAAGGGAAAATGGACGGCGAGTGGTAAGTGGAG
AGTGATGGTGAAAgaacataaaacaaaaattgaatacGGTCCCGCAGAAG
TTCTGATCAGGTGAGAGAACAAGGCACTTTGCGACATCTATATTAAAATA
ATTCGAGAAAACATCCCAGGGAAAAAAGCCCCCTTAGTTTTTGTCGCCTG
GAGTGGAGCAAAAATGGCCTCCGGGGGAGTTAGCACGCAGTTATACAGCG
TGCTTAAGAAATGCACACCATCACTATTTCAAGAAGATCGGCGAGCTAGT
ACCACACTGATTCGAAAGAGTATGGTAACATATTTCTATGAAAACCATCc
ggaaataaaagaaaaactagcAAAACTGATGAAACACAAGCCTGAGACGG
CTCAGAAATTTTATGACACGAAGAGATTGCGATTTGACTGTGAAGAAACC Run BLAST on NCBI protein sequence of TCONS_00036832-protein >TCONS_00036832-protein ID=TCONS_00036832-protein|Name=TCONS_00036832-protein|organism=Clytia hemisphaerica|type=polypeptide|length=270bp
DSSSSAHLEAQTSNLSNEDFYEIMEIFSRYLKSRSAGKKSEKNAEDEKAQ
IKRLAEWCSENHELSYRNLLNLERVQECYLDKKSKEKKHQPGTVKSYLLS
LTHFIDFLSRSIVHPRAPNVVSVASDLTIEHLHILNTEVSKWSESLKGEI
RQREMEVMCEDGEKVITKEEFQEALKSEHCIAVRKCITKIGESFKDNPKS
YNTKRDTFTNCRDVLFLILCVPNIARSGAVANMTMQEYEKGKWTASGKWR
VMVKEHKTKIEYGPAEVLIR Run BLAST on NCBI transcript from alignment at sc0001521:22375..23524 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00036832 ID=TCONS_00036832|Name=TCONS_00036832|organism=Clytia hemisphaerica|type=transcript|length=1150bp|location=Sequence derived from alignment at sc0001521:22375..23524 (Clytia hemisphaerica)
GGTTTCTTCACAGTCAAATCGCAATCTCTTCGTGTCATAAAATTTCTGAG
CCGTCTCAGGCTTGTGTTTCATCAGTTTTgctagtttttcttttatttcc
gGATGGTTTTCATAGAAATATGTTACCATACTCTTTCGAATCAGTGTGGT
ACTAGCTCGCCGATCTTCTTGAAATAGTGATGGTGTGCATTTCTTAAGCA
CGCTGTATAACTGCGTGCTAACTCCCCCGGAGGCCATTTTTGCTCCACTC
CAGGCGACAAAAACTAAGGGGGCTTTTTTCCCTGGGATGTTTTCTCGAAT
TATTTTAATATAGATGTCGCAAAGTGCCTTGTTCTCTCACCTGATCAGAA
CTTCTGCGGGACCgtattcaatttttgttttatgttcTTTCACCATCACT
CTCCACTTACCACTCGCCGTCCATTTTCCCTTTTCGTACTCTTGCATTGT
CATATTAGCCACCGCTCCTGATCTGGCAATATTTGGCACGCATAAAATGA
GAAACAAAACATCACGGCAGTTAGTGAATGTATCCCTTTTTGTATTGTAG
CTTTTCGGATTATCCTTAAAACTCTCTCCAATCTTAGTTATACATTTCCG
AACCGCGATACAGTGTTCGGATTTGAGTGCCTCTTGAAATTCTTCCTTCG
TTATCACTTTTTCACCATCCTCGCACATTACTTCCATTTCCCTCTGTCTA
ATCTCCCCCTTTAGAGATTCACTCCATTTTGAAACCTCGGTATTCAGAAT
ATGAAGGTGTTCAATTGTCAAATCAGATGCAACACTCACAACATTTGGAG
CTCTAGGGTGGACAATAGAGCGAGAAAGAAAGTCAATGAAGTGCGTGAGT
GACAAAAGGTACGATTTTACAGTGCCCGgttggtgttttttttctttgga
ttttttATCGAGGTAGCATTCTTGAACTCTTTCGAGATTCAGCAAGTTTC
GATAAGATAACTCGTGATTTTCTGAGCACCACTCAGCCAGCCGTTTTATT
TGTGCTTTTTCGTCCTCTGCATTTTTCTCGCTTTTCTTGCCAGCAGACCG
ACTTTTAAGATATCTGGAAAATATCTCCATAATTTCATAGAAGTCTTCAT
TTGACAAGTTTGAGGTTTGTGCTTCCAGGTGAGCACTCGATGAGCTGTCA
Coding sequence (CDS) from alignment at sc0001521:22375..23524 >TCONS_00036832 ID=TCONS_00036832|Name=TCONS_00036832|organism=Clytia hemisphaerica|type=CDS|length=813bp|location=Sequence derived from alignment at sc0001521:22375..23524 (Clytia hemisphaerica)
TCACCTGATCAGAACTTCTGCGGGACCgtattcaatttttgttttatgtt
cTTTCACCATCACTCTCCACTTACCACTCGCCGTCCATTTTCCCTTTTCG
TACTCTTGCATTGTCATATTAGCCACCGCTCCTGATCTGGCAATATTTGG
CACGCATAAAATGAGAAACAAAACATCACGGCAGTTAGTGAATGTATCCC
TTTTTGTATTGTAGCTTTTCGGATTATCCTTAAAACTCTCTCCAATCTTA
GTTATACATTTCCGAACCGCGATACAGTGTTCGGATTTGAGTGCCTCTTG
AAATTCTTCCTTCGTTATCACTTTTTCACCATCCTCGCACATTACTTCCA
TTTCCCTCTGTCTAATCTCCCCCTTTAGAGATTCACTCCATTTTGAAACC
TCGGTATTCAGAATATGAAGGTGTTCAATTGTCAAATCAGATGCAACACT
CACAACATTTGGAGCTCTAGGGTGGACAATAGAGCGAGAAAGAAAGTCAA
TGAAGTGCGTGAGTGACAAAAGGTACGATTTTACAGTGCCCGgttggtgt
tttttttctttggattttttATCGAGGTAGCATTCTTGAACTCTTTCGAG
ATTCAGCAAGTTTCGATAAGATAACTCGTGATTTTCTGAGCACCACTCAG
CCAGCCGTTTTATTTGTGCTTTTTCGTCCTCTGCATTTTTCTCGCTTTTC
TTGCCAGCAGACCGACTTTTAAGATATCTGGAAAATATCTCCATAATTTC
ATAGAAGTCTTCATTTGACAAGTTTGAGGTTTGTGCTTCCAGGTGAGCAC
TCGATGAGCTGTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00036832-exon-sc0001521-1491911889:22375..23524 | TCONS_00036832-exon-sc0001521-1491911889:22375..23524 | Clytia hemisphaerica | exon |
| TCONS_00036832-exon-sc0001521-1510915933:22375..23524 | TCONS_00036832-exon-sc0001521-1510915933:22375..23524 | Clytia hemisphaerica | exon |
| TCONS_00036832-exon-sc0001521-1575043694:22375..23524 | TCONS_00036832-exon-sc0001521-1575043694:22375..23524 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001521 | supercontig | sc0001521:22375..23524 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR023109 | Integrase_recombinase_N |
Blast
The following BLAST results are available for this feature:
|
