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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00036824 ID=TCONS_00036824|Name=TCONS_00036824|organism=Clytia hemisphaerica|type=transcript|length=1523bp
AAAATATCGCACTTGCTAAACATTCTTATCAACaacataaacaaacaaaa
tggcagcgAAGTGAACATCAGAAAGTTAATCTCAATTTCTTCTACGCCGT
AATTCGCAGACTATCGTCCAAGGACTCGTCGTTGCTTGCAAGACGACTCA
GTCATTAAGCATCTGGATGATATGGCTCTTTCTCAAATAGGTCAGGGTCG
TGTTACTACAACAGCACTCACAAACCACTCAAGATACCTGACAATAATCG
ATGATGAAAAGACGGCGCAGCACAAGAAAAAGACATTTCTTTGCGAACAG
CAACAGCAGGAGAATCATAACATCCAAAAGAAAGGAACACGGTTGATGCA
TACGACCACTTTAATCTTAGGGGATAAATCGAACATCACTCAGGAATACC
GTTCTAATACAAAACATAGTTTCAGCGGGAAAAAAGATCTATTGCCTTGT
ATTCAACGAAGACCCTATCCTTCGCAGCACAAAAATCAATTCGTGATTGG
AGATAAATCAATGGCAGCTTTTACAGAACATCCTAAACGATTCAATTTTG
CTACGATACAACAGaTGCCCAGAAGATCTCCGACGAACTCATCAGGCACG
AATGTTATTAACCAAGGTTCAAAATCACCAGATCTGAAAAAAGTTGTGAA
AACCACTTCTTCAACATTTGATGTTATACGTAAAGgaaATACAAGAGCCA
ATCATCACTGTGTGTCAGGAAATAAATTTCTTCAACGAGTTCGAGAAagt
aaaacagaaaattttctATCATGAACAAAAACACACCTCTTTTTCGAATA
ATTTTTGTAAGGCATATTCCGATGAATTTTTATACGGTGAacacagattt
tttttaaatgttttgtatCATAGTCCtatcttttttgtaaaaaccaactt
attttcttgaattaaaaaatacaaatttttaaaaGCAATCGATTGAAAGT
TTATTAGGATTTCAAACTTTTCCATGCGTATAATATAATCCATCAAGATT
GAATAATTCCCTCTTTTTTCAATATGTTGAAATAAGTCTTGCCCTCCGCA
ATGACGAAAGTTCATATTCGAAGTTTAATAGCATTCCCCACTAGAATGGA
GGTCTTGGTGGCGGTCGACTCCACCCACCTGAGGGCGGATTATTAAAAGG
AGGACGTGGTTGAACAGGTTGGGACATCAAAGGTTGAGGTTCACCATTCA
TAGGTGGTGGTGGTCCATAACGCCCTTGGGGTGGGCCAGGCGGTGGTCTC
GGTCCTCGGTTCATGGGCGACATTCCTGGAACAAATCGGAGAAATAAGTG
TAAGTAGATGAGGGTGAAAAATTCACGGTCTTCAAAGTGCTAGAATAATG
AATTGTGCTGGGATTTATCTGATATGGATTTAAGACATGCATTGCAGGTG
TAGGTAGAACTGGTCATTACTCTCGGGTGCGTGTCAAATTTACCAcctgt
acgcaccttattaggaactgtacgtttatttattctgaagaattttcccg
cctgtacgtttattccctcctgt Run BLAST on NCBI transcript from alignment at sc0001520:9189..14989- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00036824 ID=TCONS_00036824|Name=TCONS_00036824|organism=Clytia hemisphaerica|type=transcript|length=5801bp|location=Sequence derived from alignment at sc0001520:9189..14989- (Clytia hemisphaerica)
AAAATATCGCACTTGCTAAACATTCTTATCAACAACATAAACAAACAAAA
TGGCAGCGAAGTGAACATCAGAAAGTTAATCTCAATTTCTTCTACGCCGT
AATTCGCAGACTATCGTCCAAGGACTCGTCGTTGCTTGCAAGACGACTCA
GTCATTAAGCATCTGGATGATATGGCTCTTTCTCAAATAGGTCAGGGTCG
TGTTACTACAACAGCACTCACAAACCACTCAAGATACCTGACAATAATCG
ATGATGAAAAGACGGCGCAGCACAAGAAAAAGACATTTCTTTGCGAACAG
CAACAGCAGGAGAATCATAACATCCAAAAGAAAGGAACACGGTTGATGCA
TACGACCACTTTAATCTTAGGGGATAAATCGAACATCACTCAGGAATACC
GTTCTAATACAAAACATGTATGACATAAATTAGATTTACGCGTATTTCCC
CCATCCCATCACCCAACATCGCGGTGTTATTATATCTATCGCATCAATAT
TTTTCAATTTTCACTCCAAGTTTTTCCTCGAACCACAGAAACAGTCCTGT
GGAAGTGCATTCATCGAGATAAGCTCAAAATAAGGCAAAGATAAGACATA
TTATAGCCTTTCATTCGTCAATATTACTATAGTCGTACAAACNTTTCGCG
AGGACAAAAAATCGCGAAATTCACGACATTTACTTTCGCGAATTTAACAA
AAAAATATTTTTCGCGAGCATAAACTTTCGCGAATCACGACATAAAATTG
AGAATTTTCGCATGAAAAAATGGCTTAAAGGGACAAGTACTTCTTGGATT
GGCTTGAAACATTTGTCGGTTGACTTATTAGTCTTTTAGCAGGCTTAAAA
GTGCCATAAAAGTTACATTTTATTCAAAGTTTGAAATTTTACAGATTTTC
TATTTTGTCTAGGATTTTTCGCGAGCATAAACTTTCGCGAATGGCTGTTC
CTAGAATTTTTAAAGACATTTACTTTCGCGAAAAGGGCCAAAATTCGCGA
AAATCGCGAAAGTTTCTGCCCGCGAAAGTTTCTACGCCTAAAGTAGTTCT
CTTCAATAAGTAAGTTTCCTTTATCTCTTATTTTATGCATGTAAGGCTAC
AGCACTTATAACAATCCCGAACGGGTATTTGGCATGTATATGGGATCGTG
CCTTATGCCACTTATCAATGATTAGATTGACAGAAAAATAATCAAAGTAT
TAAATAATTATACTTTTCAATGTAGAGTTTCAGCGGGAAAAAAGATCTAT
TGCCTTGTATTCAACGAAGACCCTATCCTTCGCAGCACAAAAATCAATTC
GTGATTGGAGATAAATCAATGGCAGCTTTTACAGAACATCCTAAACGATT
CAATTTTGCTACGATACAACAGGTAAAGACAATACTTAATTCAATAAAAA
CGTTGACGTGTATAGCAAATTAAGACTCGATAAACGTTTCTAATGGTGTT
CTACCTAAAGCAACACGAAAGGGATTGGGTGGTCCGAGTTTAGCAAGTTT
GAGTGACGTCAAATCAAGAGGGGCCCTATAGAGCTCGCTTAAGGATGTTC
GCCATAATACGCCCATCGCCATATTTGACGTATACTACGATAAACGCCGG
CGTATATACACACAATGAGCCCAATGATAGCAATTTTAAATCGACTTCTA
GACAAAGTCAATCCAACCAGAAAACCAGGGGGTCATCAGTGCTCAGAAAG
GGGTACATCATGGAATTGGTCATTTGCTTTTCTAGATGTTAAAGTTATAA
ACTTCCAGGAAAAATTTCCCCAAAAAGTTAAAAAGTGTACTTACTCCACT
TGAAAGTAACTTCGTATTTTTTGGTTGTTACACACTACCACCCTGCAGAA
ACTTAAATAATTTGTAAAGCAAATCCGAGTCCCATCCTCTTGTGGTTTTA
GGGCAATTGGTAATAGTCGAATCTTATTATATACTGTAAGGATTGAAAGC
CATTATTATTATTATTATTATTATTATTGCGTATAAGAAGCGCAAGAAAA
AGAAACAGCTGGTATTTTGTAAAGAACAAACGAACAATAACTCTCTTTTT
ATTCCCTTTTAAAAGATTTTATAAGCAAAAAAGGGCTACGAAAAAATTTT
CTCTGCGTACGTACATTTTTCTTTGACCCCCCCCATGTACGCAAGCATCA
TACGCTTTTAAGAGACCCCCTCCCCCTTAGTGCGTACGTACTATGTGGAC
GGCCCCGAAATGCGGCGGAAATTTTAAGTGATCATTTTTGCTTCCCTAAG
AACGATTCCTCTGTAGCTTTGACTCAATGTTTTAGGGTTACTCTCGGGTA
CCTAATAGCCGTCCCCCCCCGCTAATTAATTTTTCGAAAATTTTCCACCC
AGGACATTCTTATTCCAACCCCCCGCTTATTANNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNCTTGAACATTATTTTACGTTTCTCT
CATTTTAGAATCCACATTTACTTGGTATTAGCCAGACACATAGAGCAATA
GGGTTTCACCAAATGAAGGGTTCTAACATGCTGCAGTCGTTATCTCACAA
TAATAACAAAGTAAGTGGTAGTTCTGTTGATAGATCCCATCCAACTTAAT
CTAATCTCTTGGTTTTAAATGAATCAAAACATCGCTGTTGGTGTATCTAG
CCCCCTCCCCGATAAGCCTCGTTTATATATTTATTTTATGAGGATAGCCA
TATGAGCCTGACAAGGAAGCAGTCGCTTTTTTGAGAATAAACCATGAAAA
ACACAATTTGTTTCAATTCTAAATAATGTCAACTCAACCAAATTCCTTTG
TTTTTTTTTTACGATTTTGATGACAAATCGCGTTCATCAGTAAAAGCAAA
TGTGGTGCAAACTTTGGGTAGATAGAATATTTAGTAGGGGGAAATTTGTT
CGTTTTTTTGAGGTCGCTCGATTGTTTTGGTCAAAGCACTTGTTATACAT
TTTTGGAAAGCTAAGGGGTAGGGGAATCAAAATAACTTAGGTGCCATTTT
TTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCAAAAATTAATGAAA
ATTTTAGCTTGAGAAAACGGAGACCTGTTGTATATTTTTGGAAAGCTCTC
AAAAATTTAAGATTAGAGATATATTGCAAGTATAGGTTGAAAACCGTGTT
TTTCAGCCAGAAACAGCTGTTTTGTCCAGTTTTTGTGCTCTTTGAAGCTC
AATATCTCGAGTTAGGTACTGAAATCACCTATACTTGCAATACATGTTTT
TTTTTTATAAGCAAGTGTATGCTCCTTGGTCAGGCTCGTGTATGCTTAAG
TTCTTTAAAGCATCCAGGCATAGTTTATGCTTATTACATGCTTATGAATC
ATGCTTATGATTCACCCCGAGCCAAGTTTTTAGTGAAATTTCAGAAATTT
TGTAAAAATTTGTTCAGATTTTGGTAGCAGTGGAATGTAGCTGGCCGTGG
AATGTGTTTTTTTACTTGATCTCTACCAAACCTTTTTAAACAGATAAAAA
ATTACAACTTGAAAAGTATTCCACGCTGACATATATGCTTATGTTATGCC
TAGAAATTCTGCAAATCTGAGCCTTCATATGCTTATAAGCGTTATGCTTA
TAAAAAAAAAACATGTATATCTCTAATCCTAATTTTTGAGAGCTTTCCAA
AAATATACAACAGGTCTCCGTTTTCTCAAGCTAAAATTTTCATAAATTTT
TAACCCTATGATTTTTGCCTGAGACCGTCATATATGTCCGAAAATCACAC
CAAAATGTCCGAAAAAAATTGGAACCCAAGTAATTTTGATTCCCCTACGC
CTTAGCTTTCCAAAAATGTATAACAAGTGCTTTGACCAAAACAATCGAGC
GATTTTACAAAATGCCCTCTACTAATTGTATTTGATGCTGATACTGATTT
GTTTTTCGATTTTTTCAGATGCCCAGAAGATCTCCGACGAACTCATCAGG
CACGAATGTTATTAACCAAGGTTCAAAATCACCAGATCTGAAAAAAGTTG
TGAAAACCACTTCTTCAACATTTGATGTTATACGTAAAGGTAAAATATAA
TTTAAAATAAAGATGTCAAATTTGGTTTGAAAACTTATATCGTCTTATGT
ATACATTTACTGTGAATTACTTATGGAGAGGTTGTAAGAAGTACTATAGA
AATTATCTCCATGGCGAATCAATGAAATTTAAAATCGTTTTTGGATTAGT
TTTAAAGAACTCATTTTGGCGAATTTTGCCAAAAATAGCTAAAATGAAAA
AAAATCCTGCCAAAAAAGTTTTTTATCTAGAATTATTAGTTTTAACACTT
TTTTTCATTTCAGGAAATACAAGAGCCAATCATCACTGTGTGTCAGGAAA
TAAATTTCTTCAACGAGTTCGAGAAAGTAAAACAGAAAATTTTCTATCAT
GAACAAAAACACACCTCTTTTTCGAATAATTTTTGTAAGGCATATTCCGA
TGAATTTTTATACGGTGAACACAGATTTTTTTTAAATGTTTTGTATCATA
GTCCTATCTTTTTTGTAAAAACCAACTTATTTTCTTGAATTAAAAAATAC
AAATTTTTAAAAGCAATCGATTGAAAGTTTATTAGGATTTCAAACTTTTC
CATGCGTATAATATAATCCATCAAGATTGAATAATTCCCTCTTTTTTCAA
TATGTTGAAATAAGTCTTGCCCTCCGCAATGACGAAAGTTCATATTCGAA
GTTTAATAGCATTCCCCACTAGAATGGAGGTCTTGGTGGCGGTCGACTCC
ACCCACCTGAGGGCGGATTATTAAAAGGAGGACGTGGTTGAACAGGTTGG
GACATCAAAGGTTGAGGTTCACCATTCATAGGTGGTGGTGGTCCATAACG
CCCTTGGGGTGGGCCAGGCGGTGGTCTCGGTCCTCGGTTCATGGGCGACA
TTCCTGGAACAAATCGGAGAAATAAGTGTAAGTAGATGAGGGTGAAAAAT
TCACGGTCTTCAAAGTGCTAGAATAATGAATTGTGCTGGGATTTATCTGA
TATGGATTTAAGACATGCATTGCAGGTGTAGGTAGAACTGGTCATTACTC
TCGGGTGCGTGTCAAATTTACCACCTGTACGCACCTTATTAGGAACTGTA
CGTTTATTTATTCTGAAGAATTTTCCCGCCTGTACGTTTATTCCCTCCTG
T
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00036824-exon-sc0001520-1575043694:14573..14989 | TCONS_00036824-exon-sc0001520-1575043694:14573..14989 | Clytia hemisphaerica | exon |
| TCONS_00036824-exon-sc0001520-1575043694:13618..13764 | TCONS_00036824-exon-sc0001520-1575043694:13618..13764 | Clytia hemisphaerica | exon |
| TCONS_00036824-exon-sc0001520-1575043694:10301..10421 | TCONS_00036824-exon-sc0001520-1575043694:10301..10421 | Clytia hemisphaerica | exon |
| TCONS_00036824-exon-sc0001520-1575043694:9189..10026 | TCONS_00036824-exon-sc0001520-1575043694:9189..10026 | Clytia hemisphaerica | exon |
| TCONS_00036824-exon-sc0001520-1510915933:14573..14989 | TCONS_00036824-exon-sc0001520-1510915933:14573..14989 | Clytia hemisphaerica | exon |
| TCONS_00036824-exon-sc0001520-1510915933:13618..13764 | TCONS_00036824-exon-sc0001520-1510915933:13618..13764 | Clytia hemisphaerica | exon |
| TCONS_00036824-exon-sc0001520-1510915933:10301..10421 | TCONS_00036824-exon-sc0001520-1510915933:10301..10421 | Clytia hemisphaerica | exon |
| TCONS_00036824-exon-sc0001520-1510915933:9189..10026 | TCONS_00036824-exon-sc0001520-1510915933:9189..10026 | Clytia hemisphaerica | exon |
| TCONS_00036824-exon-sc0001520-1491911889:14573..14989 | TCONS_00036824-exon-sc0001520-1491911889:14573..14989 | Clytia hemisphaerica | exon |
| TCONS_00036824-exon-sc0001520-1491911889:13618..13764 | TCONS_00036824-exon-sc0001520-1491911889:13618..13764 | Clytia hemisphaerica | exon |
| TCONS_00036824-exon-sc0001520-1491911889:10301..10421 | TCONS_00036824-exon-sc0001520-1491911889:10301..10421 | Clytia hemisphaerica | exon |
| TCONS_00036824-exon-sc0001520-1491911889:9189..10026 | TCONS_00036824-exon-sc0001520-1491911889:9189..10026 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001520 | supercontig | sc0001520:9189..14989 - |
Blast
The following BLAST results are available for this feature:
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