TCONS_00036820 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00036820
Unique Name	TCONS_00036820
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1249

Sequence

The following sequences are available for this feature:

transcript sequence
protein sequence
transcript from alignment at sc0001520:4491..10034+
coding sequence from alignment at sc0001520:4491..10034+

transcript sequence

>TCONS_00036820 ID=TCONS_00036820|Name=TCONS_00036820|organism=Clytia hemisphaerica|type=transcript|length=1249bp
ctttattttattttaccttTTATGTATTACTGTCTCCAACAACAATGGAC
ACCAACTAGGTTCATTCgttaatttaatacctcttaCGAGTACACTAAAG
TAACATCTTCTTTTTCAGGCATGCCACCTCCGATGATGCCtggTATGTCT
CCGATGATGCCTCCAATGTCACAAGGTGCACCTACCCCACCCTCCTCAAC
CGGATTCTCTGGTCAACCAAGACCTCTTTTCCCTGCTGCAGCTACTTCAC
AGGTTGGTGGAAAGTCTAGCGGTCCTGTTGGTGCTGACTTTAAACCGTTA
AACCCAGATATTTTGGACTGGCTCCAATATTTCTTTGCACCAGAGATGAT
GACGCTGGTTTGAATTACAGTGTACCAAAAGCTACTAATATTCCACAAGT
CACTGCTACCAGTCGTATCATTCATCCCGATGAAGATAATTCACTTGAGG
AATTGAAATGTAAATTGGAGAAATATCATCTTCGTCCGCAAAAGGAAAAA
GGTCCACCACCTGGACCTCCAGGTCCGCCGCCTATGAACATGATGGGTGG
TCCACCTCAACGAATGATGGGTCCCCCTGGACGACCACCTGTCCCACCGC
CGGGAATGCCGCCTCCTGGAATGACACCTCCTGGAATGGCACCTCGTCCA
GGAATGTCGCCCATGAACCGAGGACCGAGACCACCGCCTGGCCCACCCCA
AGGGCGTTATGGACCACCACCACCTATGAATGGTGAACCTCAACCTTTGA
TGTCCCAACCTGTTCAACCACGTCCTCCTTTTAATAATCCGCCCTCAGGT
GGGTGGAGTCGACCGCCACCAAGACCTCCATTCTAGTGGGGAATGCTATT
AAACTTCGAATATGAACTTTCGTCATTGCGGAGGGCAAGACTTATTTCAA
CATATTGAAAAAAGAGGGAATTATTCAATCTTGATGGATTATATTATACG
CATGGAAAAGTTTGAAATCCTAATAAACTTTCAATCGATTGCttttaaaa
atttgtattttttaattcaagaaaataagttggtttttacaaaaaagata
GGACTATGatacaaaacatttaaaaaaaatctgtgtTCACCGTATAAAAA
TTCATCGGAATATGCCTTACAAAAATTATTCGAAAAAGAGGTGTGTTTTT
GTTCATGATagaaaattttctgttttactTTCTCGAACTCGTTGAAGAAA
TTTATTTCCTGACACACAGTGATGATTGGCTCTTGTATttcctgaaatg

Run BLAST on NCBI

protein sequence of TCONS_00036820-protein

>TCONS_00036820-protein ID=TCONS_00036820-protein|Name=TCONS_00036820-protein|organism=Clytia hemisphaerica|type=polypeptide|length=100bp
MNMMGGPPQRMMGPPGRPPVPPPGMPPPGMTPPGMAPRPGMSPMNRGPRP
PPGPPQGRYGPPPPMNGEPQPLMSQPVQPRPPFNNPPSGGWSRPPPRPPF

Run BLAST on NCBI

transcript from alignment at sc0001520:4491..10034+

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00036820 ID=TCONS_00036820|Name=TCONS_00036820|organism=Clytia hemisphaerica|type=transcript|length=5544bp|location=Sequence derived from alignment at sc0001520:4491..10034+ (Clytia hemisphaerica)
ctttattttattttaccttTTATGTATTACTGTCTCCAACAACAATGGAC
ACCAACTAGGTTCATTCgttaatttaatacctcttaCGAGTACACTAAAG
TAACATCTTCTTTTTCAGGCATGCCACCTCCGATGATGCCtgggtaaaaa
taaattaattttgtaTCTCCATTATATTCACCTAATGCATTCGTATcatc
tttgaagtttttttttaacattaagTTATTGAGTAGGGTTTTCAAGGCAT
TGTTGACTGAAgagaccataaaacttgttcgagttaagaaaacttattcg
agttaagaaaacattcgagttataggtTTAAGTCAAGTTAAAGGTTATTT
AAATCTTTATACGGTATCACATCCAAACTTATGTTCATTCTCCTGTGCTT
TTTATACCATAGTATGTCTCCGATGATGCCTCCAATGTCACAAGGTGCAC
CTACCCCACCCTCCTCAACCGGATTCTCTGGTCAACCAAGACCTCTTTTC
CCTGCTGCAGCTACTTCACAGGTGAGCCTCACTTTTCTTTAATTGTAATT
GCAACTTTTTGCCAGCCTCTTTTAAACTAACGTTTCTTGGCCAACAAAGA
CCTGCTACTTATATCGTACAATGTAAGAATGCATTAATTCTAAAATCGat
aacaaaacagtcaaaatCATGCTAGTTTAATCACGTTttatattaaattt
ttcttaactgtacatttgactttgatttttagTATCTATTGAAATTTTAG
ACCCacataatttttacaaaaagagGCTAAGAGAATAGAGCCAACGTATG
ACCTTAACCTATAATTTTACCCgacattatttatttatttatcctGTTTG
GAAATTGTCGTTTTTTATGTACTTTTCCTTTACAGATTTGCCTCTAATGT
CATTTTTGAGTGGCCTGATTCGCGTACGCCTCTCACTAAGAGAGTTTTCT
AAATGCATTGTTGTTTTAAATGAGTCAAATAttcttattggtatatattt
tcgcgtgttacaaattttcgcgaatcgcgacaaaaaacgtgtttcgcgtg
tattaaatttcgcgattgccgacttctggaaaattttcacctgcattaaa
tttcgcgattcacctaactaggtattttcagaaagtgggaatataaagca
agaaaaagactgatttttcttgaaacacaacgtttttgatgtaaaaaaat
tctaacaaaatactaagaaaatttttttcgcgtgtatttaatttcgcgat
tttgtaattttgaaaaatttaaacagtattaaatttcgcgaaaattgacc
aaaaaactcgtgaaattaagtacccgcgaaaatttgtaacatgcgaaaat
atataccaataaggtattctTGTTTATTCACTGTACAGCAATAATTTTGA
TTCAATCTTAGGTTGGTGGAAAGTCTAGCGGTCCTGTTGGTGCTGACTTT
AAACCGTTAAACCCAGGTAAGGACAAGTCACTTCTTTCACAAAATTCAAA
CTGTGAAATGATAACACCATTCTTTATGTTTCAGGGTAATTGTTTTGATC
aatttattgagatttattttcttgaacattttttccAGATATTTTGGACT
GGCTCCAATATTTCTTTGCACCAGTGAGTCGATGTCAATTTATTTCAATA
ACAGTTAGTGATAAAAACCCCTGTCATCTCATTCTTTAAGGGGGAAGATG
TCTTAACTAGACTGTTTTTCGCCGATGTTGGCACTTACTAGTTTTTACAT
GACATATCGCTTTTATACAAACAGTCTTTTCAACCCTAGTTTGAGttcct
tttttaaaaagaatcccCGCCTATGAGGAGTGTTTTACCTACTGTAATAC
CAGGCTCTACAAAAGCTCAGTGATAAAAACCTCAGTGATTTGGAATGATC
CAATCACTCAAAGCCAATCTATTCTGATTTGAGTGATCCAACTTTTACCT
CGGGCTGGCTAATCCCCGcaagtaccttaagggaacttatttcggcgaat
tttacaaaaaactaTCAAGTAATAAAACTAGGCGGCACATGAAATGTTCT
ATGAAATGTGGATGGTTTTGcacatatttttttgtttttttaaacccAGG
CTTATCttcaaaaacaatgacgtctagtatagggtAGGATTTTTGCTGCT
CGCCAATTATTAGTTCCCTCAAGGTATTTTGCGAAACAACCTAACTTTTA
CGTTTGATTAATTGAGTCTAACAGTGAGAACAGGTGTTAAGCTTTCAATC
ATTTATATACGATACAGGTGCTATAAATTCTGTATGTCAAGCCATATGAC
TGAGATGGTTAATCAGAAAATATTTCACGTAAACTCATAGTAGGTGCAAA
AATAGGTGATGAAagtgtgaaaatgtttttatttagcTCGATGACTTCTT
ATTAATGGTCAATACTATTATTTTTTACCTCCGGTTATTATTTTTTCCAG
GGTTTGTTCTAACCTTAAAATGAAACAANAACCTCCGGTTATTTTTCCAG
GGTTTGTTCTAACCTTAAAATGAAACAACATGTTATTCCTAATACTCCAC
AGCCATTTACCGTCTTATCAGCATTCTCAATTTAGACTATTTTTAGATTA
GACAAAATTTTACCTTTTGAATTGTATTTACTCGACATGTACTTTCTTTG
CTCCCTATTTTCTGAAGCCATTTTCTTTATTAATTAAGGTTGTGGTCCTT
TAATGACGGATGCTATTTTTCCTTCTGGTAATCTAGACCCCTTTTGTATC
ACTCAGTGCCTTCTATCCTTCAAACAAGAATTTTTCAATGTCTCATTAAT
GGCTCCCGGTAGAAAAATTCCCAATTTGAATAAAACCGAAATGCATAGTT
CTCTTCGACCTAGCAAAGAAACCTGCCATTTTCAGAATATtaatcatttc
aatttcattaacTTAATTAACATTGTTCACATTCACCAGGAGATGATGAC
GCTGGTTTGAATTACAGTGTACCAAAAGCTACTAATATTCCACAAGTCAC
TGCTACCAGTCGTATCATTCATCCCGATGAAGATAATTCACTTGTAAGTC
AATTGagcttttcctgaaaaaaatatCTACATGGAGTGGAGAATATCTTG
TTTTTTCAATGACCCACCTTTGGACATTTCGATTCACCCGGACATTGCAA
GGTTACCCTATGGATATGATGGTCATGCAGAATTTTTTCGATACCCATAG
ACAGTCTATCTTCCCCCTCCCTTTCAGAATTTGATTTTAAAGTTGACGCC
AAAAACCAtagtttttaggcttttttgcTCAGGACTTTCATGGTCGTTCT
TTTTTCCAATCCTCGGCTAATTATTTTTAGAATTCCTAGATGagaatttt
cgagatttttatTCAGTTCAGTGTTTCACTTTTATAATACCAAGCGATAT
AGTATTGTTATTAACATCCAATTTGTCATTTCTATATTTCTAGGAGGAAT
TGAAATGTAAATTGGAGAAATATCATCTTCGTCCGCAAAAGGAAAAAGGT
CCACCACCTGGACCTCCAGGTCCGCCGCCTATGAACATGATGGGTGGTCC
ACCTCAACGAATGATGGGTCCCCCTGGACGACCACCTGTCCCACCGCCGG
GAATGCCGCCTCCTGGAATGACACCTCCTGGAATGGCACCTCGTCCAGGT
TAGATTGATCATTCCCGTCTCTCTTTCAGAGAACACgctactctcgggtg
cctaataaacgtacagaccaaaataaatgtacaggggagagaataaaatt
ggaattaataaacgtacaggctgaaataaacgtacaagcgagctaaaata
aataaacgtacaggctaaaataaacgtacagtgaATAATctatcaatttt
tcaaaagtagaacaTCCAGGTCGAAACGACTGACTTAAGTATAGGTTTAT
CTCTTATAAATCAATGACAAGTACTAAATAAGCAAAACGATCGAATTTAC
TCGTGtaaagctaaggctacactgatagttttttcaggcggctgcaatgc
aattgTTGCATTGCAGCCGCTGAAAATTGTTGCTGTCTAGCCATCTAAAA
AAAGGAACcaggaaaaacgtcaaaaaacattcgatttacaatacattcga
aaaacaaaacattcgaattacaaaacattcgaattacaaaaaattcgaat
tacaaagcattcgattttattaaaaacattcgattttcgaaGGTCTGACG
TTCGAATGACGTAATAAGATTGGAATGTCAGATacattgtcaaaaaaatt
gcagattcttctgcaacaaaatcagttcaaactgattttgttgcagaCAC
TTGCAATTTGTTCTGCAATATTTTCATTGCGTTGCAGAGCAATtgcagaa
aaaattgacgtgctACATTTAGCATTTTCTCGCGCGCTTGCAACGCAACG
CTAATTGCATTGCAGCCACCTGGGAAAactatcagtgtagccttagctta
aCACTTGAAATCTCCCACAATACGTTTGAATGTAATTAACGGCCTTTCAA
CATAtcttacttgaacaaaaaataacaaatttttccaGTATGAATTGGGC
GATATTGGGTGAAAATAAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNATATtgggtgaaaataaataaacgtac
aggagggaataaacgtacaggcgggaaaattcttcagaataaataaacgt
acagttcctaataaggtgcgtacaggTGGTAAATTTGACACGCACCCGAG
AGTAATGACCAGTTCTACCTACACCTGCAATGCATGTCTTAAATCCATAT
CAGATAAATCCCAGCACAATTCATTATTCTAGCACTTTGAAGACCGTGAA
TTTTTCACCCTCATCTACTTACACTTATTTCTCCGATTTGTTCCAGGAAT
GTCGCCCATGAACCGAGGACCGAGACCACCGCCTGGCCCACCCCAAGGGC
GTTATGGACCACCACCACCTATGAATGGTGAACCTCAACCTTTGATGTCC
CAACCTGTTCAACCACGTCCTCCTTTTAATAATCCGCCCTCAGGTGGGTG
GAGTCGACCGCCACCAAGACCTCCATTCTAGTGGGGAATGCTATTAAACT
TCGAATATGAACTTTCGTCATTGCGGAGGGCAAGACTTATTTCAACATAT
TGAAAAAAGAGGGAATTATTCAATCTTGATGGATTATATTATACGCATGG
AAAAGTTTGAAATCCTAATAAACTTTCAATCGATTGCttttaaaaatttg
tattttttaattcaagaaaataagttggtttttacaaaaaagataGGACT
ATGatacaaaacatttaaaaaaaatctgtgtTCACCGTATAAAAATTCAT
CGGAATATGCCTTACAAAAATTATTCGAAAAAGAGGTGTGTTTTTGTTCA
TGATagaaaattttctgttttactTTCTCGAACTCGTTGAAGAAATTTAT
TTCCTGACACACAGTGATGATTGGCTCTTGTATttcctgaaatg

Coding sequence (CDS) from alignment at sc0001520:4491..10034+

>TCONS_00036820 ID=TCONS_00036820|Name=TCONS_00036820|organism=Clytia hemisphaerica|type=CDS|length=606bp|location=Sequence derived from alignment at sc0001520:4491..10034+ (Clytia hemisphaerica)
ATGAACATGATGGGTGGTCCACCTCAACGAATGATGGGTCCCCCTGGACG
ACCACCTGTCCCACCGCCGGGAATGCCGCCTCCTGGAATGACACCTCCTG
GAATGGCACCTCGTCCAGGAATGTCGCCCATGAACCGAGGACCGAGACCA
CCGCCTGGCCCACCCCAAGGGCGTTATGGACCACCACCACCTATGAATGG
TGAACCTCAACCTTTGATGTCCCAACCTGTTCAACCACGTCCTCCTTTTA
ATAATCCGCCCTCAGGTGGGTGGAGTCGACCGCCACCAAGACCTCCATTC
TAGATGAACATGATGGGTGGTCCACCTCAACGAATGATGGGTCCCCCTGG
ACGACCACCTGTCCCACCGCCGGGAATGCCGCCTCCTGGAATGACACCTC
CTGGAATGGCACCTCGTCCAGGAATGTCGCCCATGAACCGAGGACCGAGA
CCACCGCCTGGCCCACCCCAAGGGCGTTATGGACCACCACCACCTATGAA
TGGTGAACCTCAACCTTTGATGTCCCAACCTGTTCAACCACGTCCTCCTT
TTAATAATCCGCCCTCAGGTGGGTGGAGTCGACCGCCACCAAGACCTCCA
TTCTAG

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_021749	XLOC_021749	Clytia hemisphaerica	gene

The following polypeptide feature(s) derives from this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00036820-protein	TCONS_00036820-protein	Clytia hemisphaerica	polypeptide

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0001520	supercontig	sc0001520:4491..10034 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
4.69882	2.25322	3.07727	3.33837	5.9179	5.09148	12.2284	8.47979	12.4637	11.4006	3.01373	8.93912	10.682	13.6092	8.4415	11.2388	10.3282	10.9362	6.44002	6.56776	7.11773	7.44955	6.91138	6.48568	9.35407	6.91277	4.5445	2.04566	4.22343	5.27061

Blast

The following BLAST results are available for this feature:

BLAST of TCONS_00036820 vs. Swiss-Prot (Human)

BLAST of TCONS_00036820 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0


Match Name	E-value	Identity	Description

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TCONS_00036820 (transcript) - C. hemisphaerica