TCONS_00036819 (transcript) - C. hemisphaerica

Overview
NameTCONS_00036819
Unique NameTCONS_00036819
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1251

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00036819 ID=TCONS_00036819|Name=TCONS_00036819|organism=Clytia hemisphaerica|type=transcript|length=1251bp
ATTTGACCACTGAATTTCAACCTGTTTTTATTTTgcactttattttattt
taccttTTATGTATTACTGTCTCCAACAACAATGGACACCAACTAGGTTC
ATTCgttaatttaatacctcttaCGAGTACACTAAAGTAACATCTTCTTT
TTCAGGCATGCCACCTCCGATGATGCCtggTATGTCTCCGATGATGCCTC
CAATGTCACAAGGTGCACCTACCCCACCCTCCTCAACCGGATTCTCTGGT
CAACCAAGACCTCTTTTCCCTGCTGCAGCTACTTCACAGGTTGGTGGAAA
GTCTAGCGGTCCTGTTGGTGCTGACTTTAAACCGTTAAACCCAGGAGATG
ATGACGCTGGTTTGAATTACAGTGTACCAAAAGCTACTAATATTCCACAA
GTCACTGCTACCAGTCGTATCATTCATCCCGATGAAGATAATTCACTTGA
GGAATTGAAATGTAAATTGGAGAAATATCATCTTCGTCCGCAAAAGGAAA
AAGGTCCACCACCTGGACCTCCAGGTCCGCCGCCTATGAACATGATGGGT
GGTCCACCTCAACGAATGATGGGTCCCCCTGGACGACCACCTGTCCCACC
GCCGGGAATGCCGCCTCCTGGAATGACACCTCCTGGAATGGCACCTCGTC
CAGGAATGTCGCCCATGAACCGAGGACCGAGACCACCGCCTGGCCCACCC
CAAGGGCGTTATGGACCACCACCACCTATGAATGGTGAACCTCAACCTTT
GATGTCCCAACCTGTTCAACCACGTCCTCCTTTTAATAATCCGCCCTCAG
GTGGGTGGAGTCGACCGCCACCAAGACCTCCATTCTAGTGGGGAATGCTA
TTAAACTTCGAATATGAACTTTCGTCATTGCGGAGGGCAAGACTTATTTC
AACATATTGAAAAAAGAGGGAATTATTCAATCTTGATGGATTATATTATA
CGCATGGAAAAGTTTGAAATCCTAATAAACTTTCAATCGATTGCttttaa
aaatttgtattttttaattcaagaaaataagttggtttttacaaaaaaga
taGGACTATGatacaaaacatttaaaaaaaatctgtgtTCACCGTATAAA
AATTCATCGGAATATGCCTTACAAAAATTATTCGAAAAAGAGGTGTGTTT
TTGTTCATGATagaaaattttctgttttactTTCTCGAACTCGTTGAAGA
AATTTATTTCCTGACACACAGTGATGATTGGCTCTTGTATttcctgaaat
g
Run BLAST on NCBI

transcript from alignment at sc0001520:4454..10034+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00036819 ID=TCONS_00036819|Name=TCONS_00036819|organism=Clytia hemisphaerica|type=transcript|length=5581bp|location=Sequence derived from alignment at sc0001520:4454..10034+ (Clytia hemisphaerica)
ATTTGACCACTGAATTTCAACCTGTTTTTATTTTgcactttattttattt
taccttTTATGTATTACTGTCTCCAACAACAATGGACACCAACTAGGTTC
ATTCgttaatttaatacctcttaCGAGTACACTAAAGTAACATCTTCTTT
TTCAGGCATGCCACCTCCGATGATGCCtgggtaaaaataaattaattttg
taTCTCCATTATATTCACCTAATGCATTCGTATcatctttgaagtttttt
tttaacattaagTTATTGAGTAGGGTTTTCAAGGCATTGTTGACTGAAga
gaccataaaacttgttcgagttaagaaaacttattcgagttaagaaaaca
ttcgagttataggtTTAAGTCAAGTTAAAGGTTATTTAAATCTTTATACG
GTATCACATCCAAACTTATGTTCATTCTCCTGTGCTTTTTATACCATAGT
ATGTCTCCGATGATGCCTCCAATGTCACAAGGTGCACCTACCCCACCCTC
CTCAACCGGATTCTCTGGTCAACCAAGACCTCTTTTCCCTGCTGCAGCTA
CTTCACAGGTGAGCCTCACTTTTCTTTAATTGTAATTGCAACTTTTTGCC
AGCCTCTTTTAAACTAACGTTTCTTGGCCAACAAAGACCTGCTACTTATA
TCGTACAATGTAAGAATGCATTAATTCTAAAATCGataacaaaacagtca
aaatCATGCTAGTTTAATCACGTTttatattaaatttttcttaactgtac
atttgactttgatttttagTATCTATTGAAATTTTAGACCCacataattt
ttacaaaaagagGCTAAGAGAATAGAGCCAACGTATGACCTTAACCTATA
ATTTTACCCgacattatttatttatttatcctGTTTGGAAATTGTCGTTT
TTTATGTACTTTTCCTTTACAGATTTGCCTCTAATGTCATTTTTGAGTGG
CCTGATTCGCGTACGCCTCTCACTAAGAGAGTTTTCTAAATGCATTGTTG
TTTTAAATGAGTCAAATAttcttattggtatatattttcgcgtgttacaa
attttcgcgaatcgcgacaaaaaacgtgtttcgcgtgtattaaatttcgc
gattgccgacttctggaaaattttcacctgcattaaatttcgcgattcac
ctaactaggtattttcagaaagtgggaatataaagcaagaaaaagactga
tttttcttgaaacacaacgtttttgatgtaaaaaaattctaacaaaatac
taagaaaatttttttcgcgtgtatttaatttcgcgattttgtaattttga
aaaatttaaacagtattaaatttcgcgaaaattgaccaaaaaactcgtga
aattaagtacccgcgaaaatttgtaacatgcgaaaatatataccaataag
gtattctTGTTTATTCACTGTACAGCAATAATTTTGATTCAATCTTAGGT
TGGTGGAAAGTCTAGCGGTCCTGTTGGTGCTGACTTTAAACCGTTAAACC
CAGGTAAGGACAAGTCACTTCTTTCACAAAATTCAAACTGTGAAATGATA
ACACCATTCTTTATGTTTCAGGGTAATTGTTTTGATCaatttattgagat
ttattttcttgaacattttttccAGATATTTTGGACTGGCTCCAATATTT
CTTTGCACCAGTGAGTCGATGTCAATTTATTTCAATAACAGTTAGTGATA
AAAACCCCTGTCATCTCATTCTTTAAGGGGGAAGATGTCTTAACTAGACT
GTTTTTCGCCGATGTTGGCACTTACTAGTTTTTACATGACATATCGCTTT
TATACAAACAGTCTTTTCAACCCTAGTTTGAGttccttttttaaaaagaa
tcccCGCCTATGAGGAGTGTTTTACCTACTGTAATACCAGGCTCTACAAA
AGCTCAGTGATAAAAACCTCAGTGATTTGGAATGATCCAATCACTCAAAG
CCAATCTATTCTGATTTGAGTGATCCAACTTTTACCTCGGGCTGGCTAAT
CCCCGcaagtaccttaagggaacttatttcggcgaattttacaaaaaact
aTCAAGTAATAAAACTAGGCGGCACATGAAATGTTCTATGAAATGTGGAT
GGTTTTGcacatatttttttgtttttttaaacccAGGCTTATCttcaaaa
acaatgacgtctagtatagggtAGGATTTTTGCTGCTCGCCAATTATTAG
TTCCCTCAAGGTATTTTGCGAAACAACCTAACTTTTACGTTTGATTAATT
GAGTCTAACAGTGAGAACAGGTGTTAAGCTTTCAATCATTTATATACGAT
ACAGGTGCTATAAATTCTGTATGTCAAGCCATATGACTGAGATGGTTAAT
CAGAAAATATTTCACGTAAACTCATAGTAGGTGCAAAAATAGGTGATGAA
agtgtgaaaatgtttttatttagcTCGATGACTTCTTATTAATGGTCAAT
ACTATTATTTTTTACCTCCGGTTATTATTTTTTCCAGGGTTTGTTCTAAC
CTTAAAATGAAACAANAACCTCCGGTTATTTTTCCAGGGTTTGTTCTAAC
CTTAAAATGAAACAACATGTTATTCCTAATACTCCACAGCCATTTACCGT
CTTATCAGCATTCTCAATTTAGACTATTTTTAGATTAGACAAAATTTTAC
CTTTTGAATTGTATTTACTCGACATGTACTTTCTTTGCTCCCTATTTTCT
GAAGCCATTTTCTTTATTAATTAAGGTTGTGGTCCTTTAATGACGGATGC
TATTTTTCCTTCTGGTAATCTAGACCCCTTTTGTATCACTCAGTGCCTTC
TATCCTTCAAACAAGAATTTTTCAATGTCTCATTAATGGCTCCCGGTAGA
AAAATTCCCAATTTGAATAAAACCGAAATGCATAGTTCTCTTCGACCTAG
CAAAGAAACCTGCCATTTTCAGAATATtaatcatttcaatttcattaacT
TAATTAACATTGTTCACATTCACCAGGAGATGATGACGCTGGTTTGAATT
ACAGTGTACCAAAAGCTACTAATATTCCACAAGTCACTGCTACCAGTCGT
ATCATTCATCCCGATGAAGATAATTCACTTGTAAGTCAATTGagcttttc
ctgaaaaaaatatCTACATGGAGTGGAGAATATCTTGTTTTTTCAATGAC
CCACCTTTGGACATTTCGATTCACCCGGACATTGCAAGGTTACCCTATGG
ATATGATGGTCATGCAGAATTTTTTCGATACCCATAGACAGTCTATCTTC
CCCCTCCCTTTCAGAATTTGATTTTAAAGTTGACGCCAAAAACCAtagtt
tttaggcttttttgcTCAGGACTTTCATGGTCGTTCTTTTTTCCAATCCT
CGGCTAATTATTTTTAGAATTCCTAGATGagaattttcgagatttttatT
CAGTTCAGTGTTTCACTTTTATAATACCAAGCGATATAGTATTGTTATTA
ACATCCAATTTGTCATTTCTATATTTCTAGGAGGAATTGAAATGTAAATT
GGAGAAATATCATCTTCGTCCGCAAAAGGAAAAAGGTCCACCACCTGGAC
CTCCAGGTCCGCCGCCTATGAACATGATGGGTGGTCCACCTCAACGAATG
ATGGGTCCCCCTGGACGACCACCTGTCCCACCGCCGGGAATGCCGCCTCC
TGGAATGACACCTCCTGGAATGGCACCTCGTCCAGGTTAGATTGATCATT
CCCGTCTCTCTTTCAGAGAACACgctactctcgggtgcctaataaacgta
cagaccaaaataaatgtacaggggagagaataaaattggaattaataaac
gtacaggctgaaataaacgtacaagcgagctaaaataaataaacgtacag
gctaaaataaacgtacagtgaATAATctatcaatttttcaaaagtagaac
aTCCAGGTCGAAACGACTGACTTAAGTATAGGTTTATCTCTTATAAATCA
ATGACAAGTACTAAATAAGCAAAACGATCGAATTTACTCGTGtaaagcta
aggctacactgatagttttttcaggcggctgcaatgcaattgTTGCATTG
CAGCCGCTGAAAATTGTTGCTGTCTAGCCATCTAAAAAAAGGAACcagga
aaaacgtcaaaaaacattcgatttacaatacattcgaaaaacaaaacatt
cgaattacaaaacattcgaattacaaaaaattcgaattacaaagcattcg
attttattaaaaacattcgattttcgaaGGTCTGACGTTCGAATGACGTA
ATAAGATTGGAATGTCAGATacattgtcaaaaaaattgcagattcttctg
caacaaaatcagttcaaactgattttgttgcagaCACTTGCAATTTGTTC
TGCAATATTTTCATTGCGTTGCAGAGCAATtgcagaaaaaattgacgtgc
tACATTTAGCATTTTCTCGCGCGCTTGCAACGCAACGCTAATTGCATTGC
AGCCACCTGGGAAAactatcagtgtagccttagcttaaCACTTGAAATCT
CCCACAATACGTTTGAATGTAATTAACGGCCTTTCAACATAtcttacttg
aacaaaaaataacaaatttttccaGTATGAATTGGGCGATATTGGGTGAA
AATAAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNATATtgggtgaaaataaataaacgtacaggagggaataaa
cgtacaggcgggaaaattcttcagaataaataaacgtacagttcctaata
aggtgcgtacaggTGGTAAATTTGACACGCACCCGAGAGTAATGACCAGT
TCTACCTACACCTGCAATGCATGTCTTAAATCCATATCAGATAAATCCCA
GCACAATTCATTATTCTAGCACTTTGAAGACCGTGAATTTTTCACCCTCA
TCTACTTACACTTATTTCTCCGATTTGTTCCAGGAATGTCGCCCATGAAC
CGAGGACCGAGACCACCGCCTGGCCCACCCCAAGGGCGTTATGGACCACC
ACCACCTATGAATGGTGAACCTCAACCTTTGATGTCCCAACCTGTTCAAC
CACGTCCTCCTTTTAATAATCCGCCCTCAGGTGGGTGGAGTCGACCGCCA
CCAAGACCTCCATTCTAGTGGGGAATGCTATTAAACTTCGAATATGAACT
TTCGTCATTGCGGAGGGCAAGACTTATTTCAACATATTGAAAAAAGAGGG
AATTATTCAATCTTGATGGATTATATTATACGCATGGAAAAGTTTGAAAT
CCTAATAAACTTTCAATCGATTGCttttaaaaatttgtattttttaattc
aagaaaataagttggtttttacaaaaaagataGGACTATGatacaaaaca
tttaaaaaaaatctgtgtTCACCGTATAAAAATTCATCGGAATATGCCTT
ACAAAAATTATTCGAAAAAGAGGTGTGTTTTTGTTCATGATagaaaattt
tctgttttactTTCTCGAACTCGTTGAAGAAATTTATTTCCTGACACACA
GTGATGATTGGCTCTTGTATttcctgaaatg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_021749XLOC_021749Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00036819-exon-sc0001520-1491911889:4454..4633TCONS_00036819-exon-sc0001520-1491911889:4454..4633Clytia hemisphaericaexon
TCONS_00036819-exon-sc0001520-1510915933:4454..4633TCONS_00036819-exon-sc0001520-1510915933:4454..4633Clytia hemisphaericaexon
TCONS_00036819-exon-sc0001520-1575043694:4454..4633TCONS_00036819-exon-sc0001520-1575043694:4454..4633Clytia hemisphaericaexon
TCONS_00036819-exon-sc0001520-1491911889:4903..5011TCONS_00036819-exon-sc0001520-1491911889:4903..5011Clytia hemisphaericaexon
TCONS_00036819-exon-sc0001520-1510915933:4903..5011TCONS_00036819-exon-sc0001520-1510915933:4903..5011Clytia hemisphaericaexon
TCONS_00036819-exon-sc0001520-1575043694:4903..5011TCONS_00036819-exon-sc0001520-1575043694:4903..5011Clytia hemisphaericaexon
TCONS_00036819-exon-sc0001520-1491911889:5902..5956TCONS_00036819-exon-sc0001520-1491911889:5902..5956Clytia hemisphaericaexon
TCONS_00036819-exon-sc0001520-1510915933:5902..5956TCONS_00036819-exon-sc0001520-1510915933:5902..5956Clytia hemisphaericaexon
TCONS_00036819-exon-sc0001520-1575043694:5902..5956TCONS_00036819-exon-sc0001520-1575043694:5902..5956Clytia hemisphaericaexon
TCONS_00036819-exon-sc0001520-1491911889:7430..7533TCONS_00036819-exon-sc0001520-1491911889:7430..7533Clytia hemisphaericaexon
TCONS_00036819-exon-sc0001520-1510915933:7430..7533TCONS_00036819-exon-sc0001520-1510915933:7430..7533Clytia hemisphaericaexon
TCONS_00036819-exon-sc0001520-1575043694:7430..7533TCONS_00036819-exon-sc0001520-1575043694:7430..7533Clytia hemisphaericaexon
TCONS_00036819-exon-sc0001520-1491911889:7934..8138TCONS_00036819-exon-sc0001520-1491911889:7934..8138Clytia hemisphaericaexon
TCONS_00036819-exon-sc0001520-1510915933:7934..8138TCONS_00036819-exon-sc0001520-1510915933:7934..8138Clytia hemisphaericaexon
TCONS_00036819-exon-sc0001520-1575043694:7934..8138TCONS_00036819-exon-sc0001520-1575043694:7934..8138Clytia hemisphaericaexon
TCONS_00036819-exon-sc0001520-1491911889:9437..10034TCONS_00036819-exon-sc0001520-1491911889:9437..10034Clytia hemisphaericaexon
TCONS_00036819-exon-sc0001520-1510915933:9437..10034TCONS_00036819-exon-sc0001520-1510915933:9437..10034Clytia hemisphaericaexon
TCONS_00036819-exon-sc0001520-1575043694:9437..10034TCONS_00036819-exon-sc0001520-1575043694:9437..10034Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001520supercontigsc0001520:4454..10034 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
38.9277	36.1276	87.3552	101.476	87.7129	71.7356	67.4948	81.8262	37.8978	43.1848	45.907	29.5601	34.1093	33.8445	32.8212	37.4464	43.6417	38.4962	17.5071	21.4117	30.2965	32.4727	34.9237	32.0249	38.5247	37.1079	26.204	22.8218	24.261	24.4702
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00036819 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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