TCONS_00036812 (transcript) - C. hemisphaerica

Overview
NameTCONS_00036812
Unique NameTCONS_00036812
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length564

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00036812 ID=TCONS_00036812|Name=TCONS_00036812|organism=Clytia hemisphaerica|type=transcript|length=564bp
caaaaatggatgatgggtatgtgcggacggtaagggtcggtatTTCACCT
TGCCACTCACGTTGAAGGTATAAGAATTATTAGGTGTCCAAACTTAATTT
GCCTTGAAGCATTATCAAAATAAGGGATATAACACATTTGTTTAAAAGGT
GAATAAGATAGAGGAGATATGGTTATCAATTCAGTATCATCTTTTACAAa
taggtttttttataaaatgtaaaatgttCCACCACTTTTTCATAATCACA
AACTTTGATTAGATCACCATCTTCGCAACGCACCAGTGTAACCTTCTGTA
TCACATATACTGGGCTGTCTTTGGTTATTATTGGAGTCTTTGGCATCTTC
AAGAAACCCTTTTTGTATTTATGTTCTTTAAAATATCGTAATTCGACCAC
ATCTTCtccatttttatcttttgacaCGGCCAGAACAACAGCAAACTCCA
ATTTCCGATATACCACCGCTACATTATCTCCAATATTGATATCATAAGGT
GGGTATTCCTTAATGTCTTCGAACCACTTATTCGTGTTCTTTGGAGAGGA
AAAAAGGATAGGGA
Run BLAST on NCBI

protein sequence of TCONS_00036812-protein

>TCONS_00036812-protein ID=TCONS_00036812-protein|Name=TCONS_00036812-protein|organism=Clytia hemisphaerica|type=polypeptide|length=122bp
PILFSSPKNTNKWFEDIKEYPPYDINIGDNVAVVYRKLEFAVVLAVSKDK
NGEDVVELRYFKEHKYKKGFLKMPKTPIITKDSPVYVIQKVTLVRCEDGD
LIKVCDYEKVVEHFTFYKKTYL
Run BLAST on NCBI

transcript from alignment at sc0001518:2416..2979

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00036812 ID=TCONS_00036812|Name=TCONS_00036812|organism=Clytia hemisphaerica|type=transcript|length=564bp|location=Sequence derived from alignment at sc0001518:2416..2979 (Clytia hemisphaerica)
TCCCTATCCTTTTTTCCTCTCCAAAGAACACGAATAAGTGGTTCGAAGAC
ATTAAGGAATACCCACCTTATGATATCAATATTGGAGATAATGTAGCGGT
GGTATATCGGAAATTGGAGTTTGCTGTTGTTCTGGCCGtgtcaaaagata
aaaatggaGAAGATGTGGTCGAATTACGATATTTTAAAGAACATAAATAC
AAAAAGGGTTTCTTGAAGATGCCAAAGACTCCAATAATAACCAAAGACAG
CCCAGTATATGTGATACAGAAGGTTACACTGGTGCGTTGCGAAGATGGTG
ATCTAATCAAAGTTTGTGATTATGAAAAAGTGGTGGaacattttacattt
tataaaaaaacctatTTGTAAAAGATGATACTGAATTGATAACCATATCT
CCTCTATCTTATTCACCTTTTAAACAAATGTGTTATATCCCTTATTTTGA
TAATGCTTCAAGGCAAATTAAGTTTGGACACCTAATAATTCTTATACCTT
CAACGTGAGTGGCAAGGTGAAataccgacccttaccgtccgcacataccc
atcatccatttttg

Coding sequence (CDS) from alignment at sc0001518:2416..2979

>TCONS_00036812 ID=TCONS_00036812|Name=TCONS_00036812|organism=Clytia hemisphaerica|type=CDS|length=369bp|location=Sequence derived from alignment at sc0001518:2416..2979 (Clytia hemisphaerica)
CCTATCCTTTTTTCCTCTCCAAAGAACACGAATAAGTGGTTCGAAGACAT
TAAGGAATACCCACCTTATGATATCAATATTGGAGATAATGTAGCGGTGG
TATATCGGAAATTGGAGTTTGCTGTTGTTCTGGCCGtgtcaaaagataaa
aatggaGAAGATGTGGTCGAATTACGATATTTTAAAGAACATAAATACAA
AAAGGGTTTCTTGAAGATGCCAAAGACTCCAATAATAACCAAAGACAGCC
CAGTATATGTGATACAGAAGGTTACACTGGTGCGTTGCGAAGATGGTGAT
CTAATCAAAGTTTGTGATTATGAAAAAGTGGTGGaacattttacatttta
taaaaaaacctatTTGTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_021742XLOC_021742Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00036812-proteinTCONS_00036812-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00036812-exon-sc0001518-1491911889:2416..2979TCONS_00036812-exon-sc0001518-1491911889:2416..2979Clytia hemisphaericaexon
TCONS_00036812-exon-sc0001518-1510915933:2416..2979TCONS_00036812-exon-sc0001518-1510915933:2416..2979Clytia hemisphaericaexon
TCONS_00036812-exon-sc0001518-1575043694:2416..2979TCONS_00036812-exon-sc0001518-1575043694:2416..2979Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001518supercontigsc0001518:2416..2979 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0.114336	0	0	0.128485	0	0	0	0	0	0.0664652	0	0.113495	0	0.0750226	0.0768957	0	0	0.19821	0.144748	0	0	0.321895	0.0957611	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00036812 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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