TCONS_00036809 (transcript) - C. hemisphaerica

Overview
NameTCONS_00036809
Unique NameTCONS_00036809
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1277

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00036809 ID=TCONS_00036809|Name=TCONS_00036809|organism=Clytia hemisphaerica|type=transcript|length=1277bp
GAGACAATCAAGACAAAAAACGTATTGGAGCCTTGGTATTGTTTGACTGG
TGATACACGAAAACGGTACTATCATATATATAAAGATGTGAATCGAAGAC
AACCAGAGCAGAAAGAGCAAATCAAGAAGGAAAAGATCAGATATTTCATT
TTATAGAAATAAAAAGCTACAAATAAAATGCAGTCAGACTCGGTTTCTTA
ATTTAGTTTAGGTTATTGATTAGTCTTCATCTTTAATCAATATATTCTAA
CTATTTTAACTCCTTTGTAACTCCTGGAAATTCATTTTTCCGCTTTTTCC
GCTTTAGATGTCAAAATCGGAGACTCACCACGAAAAAAAGACTAAGAAAA
TTGACGCCTATTAGAacgtttttgaattttcaggggtcttaaataccgtc
ataccgacaaaaattttggtcaaataccgtaataccgtcgataAAGGAAG
CCTAATTACCTAATTActgataccggtagaaaatgatgTAATCCGTAAAA
CcttaatcccgtcgtttttttctggtaataccgatttaccgggggaaAAA
AAGCCCCAATATAgtcgtaccgtaaaagtgaacccCCCTCCCAAATTAGC
GGACACGAACCCTATTCCNtgataccggtagaaaatgatgTAATCCGTAA
AACcttaatcccgtcgtttttttctggtaataccgatttaccggggaaAA
AAAAGCCCCAATATCGTCCtaccgtaaaagtgaacccCCCTCCCAAATTA
GCAGACACGAACCCTATTCCTCGATGGTCGGCTAAGGAGGTTCCACTGTA
GTTACAATTTTCTTTCCGTAATTTAATTTTCGAGGGATTAAGTGTTTTCA
TCTGGTATTGGAGCATCTCGTAAACAAActtacattaaaggaagaaattt
tggcgggaatttaacttGGCGAATGGCCGAAAAAGtgttttcagatttca
aaagatttgaattttgttcctcccaaaatttctttctttgataTATACGT
TTACGATTCGTATACCATTGAATGCCGGCCCTTTACCGGCTATTTATCGG
GCATCTGgcgcaaaattttgaaatgttagaTTTTGAACATCCTGAAGTAC
GTACGATCCGAAGGGGAGGGTCCTTTGAAAAGCCACACTgggaaatttgg
ctgaaatttcgtCCCGGTCGAAAGAAATTCCATGCAATTTCagccccatt
cgaaattcaatgtgaAAGATTGCACTACCCACTAGACATTTTTAagttgg
aacaatagaattttataTCCATATTTG
Run BLAST on NCBI

transcript from alignment at sc0001518:4455..6136-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00036809 ID=TCONS_00036809|Name=TCONS_00036809|organism=Clytia hemisphaerica|type=transcript|length=1682bp|location=Sequence derived from alignment at sc0001518:4455..6136- (Clytia hemisphaerica)
GAGACAATCAAGACAAAAAACGTATTGGAGCCTTGGTATTGTTTGACTGG
TGATACACGAAAACGGTACTATCATATATATAAAGATGTGAATCGTGAGT
GATATATTTTTGTATCAAAATCTTTTTTGTTTTTTATCGTGTTATAACTT
ATATTCATTTTCAAATTCCGAGGCTGTGTATAGAAAAAGGATCAAGAAAG
GTTCTCCGATAATCGTGAAAGCCCTCCCTCCATGTCATGCCTTTTATCCA
GATCCCATCTAGATGGATTACTTTAAGGTCTATTCAAACAGTAATTTAAA
TTCACCCATCTCTCGATGATCTGATCTCAATTTCAACTGTAAGTGGAATT
TGCTCGAATGACTGTACTAATTGAGGATTTTTTCGGGTTAACTAAGAGGA
AGTTAAAATAAGCTCTTGAGTTCTTAATTCTATCCAGAAATTATTAGTCG
ATGGAAGTTGTAGAAGTCGTTGATACTTTGTTCTTTGATTTTAATTCAGG
AAGACAACCAGAGCAGAAAGAGCAAATCAAGAAGGAAAAGATCAGATATT
TCATTTTATAGAAATAAAAAGCTACAAATAAAATGCAGTCAGACTCGGTT
TCTTAATTTAGTTTAGGTTATTGATTAGTCTTCATCTTTAATCAATATAT
TCTAACTATTTTAACTCCTTTGTAACTCCTGGAAATTCATTTTTCCGCTT
TTTCCGCTTTAGATGTCAAAATCGGAGACTCACCACGAAAAAAAGACTAA
GAAAATTGACGCCTATTAGAACGTTTTTGAATTTTCAGGGGTCTTAAATA
CCGTCATACCGACAAAAATTTTGGTCAAATACCGTAATACCGTCGATAAA
GGAAGCCTAATTACCTAATTACTGATACCGGTAGAAAATGATGTAATCCG
TAAAACCTTAATCCCGTCGTTTTTTTCTGGTAATACCGATTTACCGGGGG
AAAAAAAGCCCCAATATAGTCGTACCGTAAAAGTGAACCCCCCTCCCAAA
TTAGCGGACACGAACCCTATTCCNTGATACCGGTAGAAAATGATGTAATC
CGTAAAACCTTAATCCCGTCGTTTTTTTCTGGTAATACCGATTTACCGGG
GAAAAAAAAGCCCCAATATCGTCCTACCGTAAAAGTGAACCCCCCTCCCA
AATTAGCAGACACGAACCCTATTCCTCGATGGTCGGCTAAGGAGGTTCCA
CTGTAGTTACAATTTTCTTTCCGTAATTTAATTTTCGAGGGATTAAGTGT
TTTCATCTGGTATTGGAGCATCTCGTAAACAAACTTACATTAAAGGAAGA
AATTTTGGCGGGAATTTAACTTGGCGAATGGCCGAAAAAGTGTTTTCAGA
TTTCAAAAGATTTGAATTTTGTTCCTCCCAAAATTTCTTTCTTTGATATA
TACGTTTACGATTCGTATACCATTGAATGCCGGCCCTTTACCGGCTATTT
ATCGGGCATCTGGCGCAAAATTTTGAAATGTTAGATTTTGAACATCCTGA
AGTACGTACGATCCGAAGGGGAGGGTCCTTTGAAAAGCCACACTGGGAAA
TTTGGCTGAAATTTCGTCCCGGTCGAAAGAAATTCCATGCAATTTCAGCC
CCATTCGAAATTCAATGTGAAAGATTGCACTACCCACTAGACATTTTTAA
GTTGGAACAATAGAATTTTATATCCATATTTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_021740XLOC_021740Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00036809-exon-sc0001518-1575043694:6043..6136TCONS_00036809-exon-sc0001518-1575043694:6043..6136Clytia hemisphaericaexon
TCONS_00036809-exon-sc0001518-1575043694:4455..5637TCONS_00036809-exon-sc0001518-1575043694:4455..5637Clytia hemisphaericaexon
TCONS_00036809-exon-sc0001518-1510915933:6043..6136TCONS_00036809-exon-sc0001518-1510915933:6043..6136Clytia hemisphaericaexon
TCONS_00036809-exon-sc0001518-1510915933:4455..5637TCONS_00036809-exon-sc0001518-1510915933:4455..5637Clytia hemisphaericaexon
TCONS_00036809-exon-sc0001518-1491911889:6043..6136TCONS_00036809-exon-sc0001518-1491911889:6043..6136Clytia hemisphaericaexon
TCONS_00036809-exon-sc0001518-1491911889:4455..5637TCONS_00036809-exon-sc0001518-1491911889:4455..5637Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001518supercontigsc0001518:4455..6136 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.332189	0.0976295	0.451974	0.183988	0.986673	0.743391	0.768746	1.51935	0.39243	0.346737	1.07697	0.796449	0.486042	0.688308	0.0565883	0	0.106171	0.0255926	1.20357	1.18246	0.0642358	0	0	0	0.713312	1.20957	0.182199	0.0972236	0.0368703	0.262955
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00036809 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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