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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00036807 ID=TCONS_00036807|Name=TCONS_00036807|organism=Clytia hemisphaerica|type=transcript|length=2084bp
CTTTCATCGAATGACAGTCTTCAAATACACTTAACATATTCGTGCATAAG
TGAAATGTAAGTTAAACATTTGGAACATAGATTTGATTGTGCCCTGATGA
GAATGGGAGCACTCAAGTTGAAAAACGACCGTGCGTGCGGCCCAAAATAA
TGCCTTTGAAGTCGGACCATTATAGTGTAGAAAAGATTTAGccaattttg
agcaaatttgacgaaaaactTATGGTGCATTTTGGCCAGATTTTCCATAT
TTTACACCCTCAGAGTGTACTTTTTCTCCGCATCTTTTCTCATTTTgacc
cttgtagtgcacttGGGGAAGCAAGGAGAAATGACCCTTAAGGGCAGCAC
GCACAGTAGGTTAtttatgagtgcccccccccatGCCTGAGATACAGCAG
GTATATAGAATTTAGTGATCGACgcattatttttcttgttaTTACTATTG
ACTTTTATCAGGTGTCTCGCTTAAGTATCTCGCGACTACGCGATGGAGGA
AGTTATAAGAGCTGATGGGAAAGAGAGATGAACCATCCCATCAGGGGAAC
TGACCTTGAAAATGATCTAAAAGTATTAGAATATTTTAGGAAATCACTAC
GCTAGAAATGTTGGTAAACATAAAATAGTAGCtaagaatttcaatttcaa
ataattaaacATATCAGACACCATTTAGTACACCATTCCAGACAATTCTG
TCCAGTACCATATCATACCAATCAACAATATCAACTTTTCTTAAAGCTTT
ATGAATGTCTCGTTCATATGTAAATTCCGGCGCTCCTTTTGGACAACGAT
TATTAACCCAAGACGAGAGAAGCTTGCGATTTCtgaggacaatttttttt
ctggccaaaaatgccggatctatgtcggaaatcgccgtttttacaggact
tttttttttaatattctttttttttcactcaaaaacattTATAACAATGC
CAAACATCAAACATGATTcatttgtcaataaaactgattttttatgccgg
atcttttttgaattttcaccaaatttcaccatcaatctttttttattttt
cgctcAAAATGCATATTAGCATGTTTAAAATGTGAGGAATTTCGAATTCT
ACGAAgattttttgactgaaaatgcGGGAAATCTACAAAAATTTGCTCAA
CTTTAAATAGTACCTCGAGTGGATCAATTTTGGcagaaattaaatttggc
aaatttcgaCATATTAAATACtgaaaatactaaaattttCGTCGTCAgtc
gttcgccaaaatttaGCAATTAGACTATTCTTTTATTCTATGAAAAGTAT
CATTTTTGCGTTGATTTTATGCATTTATCATGAATTTCTGTTTctccaat
tttcaaatttaatcccTGTCGAAAATCGTATTTTGGTCATCCGTTAAATT
AGATCCACGGAAAAATTTATTCATTTGAGGTAATTTTGAAAGTACCCCGG
AAAATGCCCACCTCTGGATATCATGAGGAACAACCAACTTATTATTTCGG
GCTTTTTATGAGGGGTTAGAATTTTGTGTTGGTTTCTCAACTTGACTTTA
TCGCAGCATCTTGGCGCAGCACCATCCGAATTTTTGCGACTTTAGAGGGC
GCTGGAATGTTGAGCAAATTTTGAGAAGTTGAGCGTTTTtagacctaccc
cggtggaggtcctataaattaactgttgtccgttcgttcgtccgctCATT
ATGAGCTTTTCTCCAGATTGGCTCGTTCAATTTTTCCGATATTTTTCACA
AAGAATCAAAATGGTACCACCCTCGAATAATAACTCATTTTCTCCAtaga
gatggatgttttttttggacctaccttgaggTCCTACAAATTaaaggctc
tgaccatagtcagaaaattgattttagtatctgaacataaaagttatgtt
ttagattttttNGGAGGTCCTAcaaattaagggctctgaccatagtcaga
aaattgattttagtatctgaacataaaagttatgttttagattctttaac
atttttaacaaaaaattgcctttataatttgctttttaatcaaacccctt
aagagtaattaagaacttaattgcaaaaatgacg Run BLAST on NCBI transcript from alignment at sc0001518:21340..23423+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00036807 ID=TCONS_00036807|Name=TCONS_00036807|organism=Clytia hemisphaerica|type=transcript|length=2084bp|location=Sequence derived from alignment at sc0001518:21340..23423+ (Clytia hemisphaerica)
CTTTCATCGAATGACAGTCTTCAAATACACTTAACATATTCGTGCATAAG
TGAAATGTAAGTTAAACATTTGGAACATAGATTTGATTGTGCCCTGATGA
GAATGGGAGCACTCAAGTTGAAAAACGACCGTGCGTGCGGCCCAAAATAA
TGCCTTTGAAGTCGGACCATTATAGTGTAGAAAAGATTTAGccaattttg
agcaaatttgacgaaaaactTATGGTGCATTTTGGCCAGATTTTCCATAT
TTTACACCCTCAGAGTGTACTTTTTCTCCGCATCTTTTCTCATTTTgacc
cttgtagtgcacttGGGGAAGCAAGGAGAAATGACCCTTAAGGGCAGCAC
GCACAGTAGGTTAtttatgagtgcccccccccatGCCTGAGATACAGCAG
GTATATAGAATTTAGTGATCGACgcattatttttcttgttaTTACTATTG
ACTTTTATCAGGTGTCTCGCTTAAGTATCTCGCGACTACGCGATGGAGGA
AGTTATAAGAGCTGATGGGAAAGAGAGATGAACCATCCCATCAGGGGAAC
TGACCTTGAAAATGATCTAAAAGTATTAGAATATTTTAGGAAATCACTAC
GCTAGAAATGTTGGTAAACATAAAATAGTAGCtaagaatttcaatttcaa
ataattaaacATATCAGACACCATTTAGTACACCATTCCAGACAATTCTG
TCCAGTACCATATCATACCAATCAACAATATCAACTTTTCTTAAAGCTTT
ATGAATGTCTCGTTCATATGTAAATTCCGGCGCTCCTTTTGGACAACGAT
TATTAACCCAAGACGAGAGAAGCTTGCGATTTCtgaggacaatttttttt
ctggccaaaaatgccggatctatgtcggaaatcgccgtttttacaggact
tttttttttaatattctttttttttcactcaaaaacattTATAACAATGC
CAAACATCAAACATGATTcatttgtcaataaaactgattttttatgccgg
atcttttttgaattttcaccaaatttcaccatcaatctttttttattttt
cgctcAAAATGCATATTAGCATGTTTAAAATGTGAGGAATTTCGAATTCT
ACGAAgattttttgactgaaaatgcGGGAAATCTACAAAAATTTGCTCAA
CTTTAAATAGTACCTCGAGTGGATCAATTTTGGcagaaattaaatttggc
aaatttcgaCATATTAAATACtgaaaatactaaaattttCGTCGTCAgtc
gttcgccaaaatttaGCAATTAGACTATTCTTTTATTCTATGAAAAGTAT
CATTTTTGCGTTGATTTTATGCATTTATCATGAATTTCTGTTTctccaat
tttcaaatttaatcccTGTCGAAAATCGTATTTTGGTCATCCGTTAAATT
AGATCCACGGAAAAATTTATTCATTTGAGGTAATTTTGAAAGTACCCCGG
AAAATGCCCACCTCTGGATATCATGAGGAACAACCAACTTATTATTTCGG
GCTTTTTATGAGGGGTTAGAATTTTGTGTTGGTTTCTCAACTTGACTTTA
TCGCAGCATCTTGGCGCAGCACCATCCGAATTTTTGCGACTTTAGAGGGC
GCTGGAATGTTGAGCAAATTTTGAGAAGTTGAGCGTTTTtagacctaccc
cggtggaggtcctataaattaactgttgtccgttcgttcgtccgctCATT
ATGAGCTTTTCTCCAGATTGGCTCGTTCAATTTTTCCGATATTTTTCACA
AAGAATCAAAATGGTACCACCCTCGAATAATAACTCATTTTCTCCAtaga
gatggatgttttttttggacctaccttgaggTCCTACAAATTaaaggctc
tgaccatagtcagaaaattgattttagtatctgaacataaaagttatgtt
ttagattttttNGGAGGTCCTAcaaattaagggctctgaccatagtcaga
aaattgattttagtatctgaacataaaagttatgttttagattctttaac
atttttaacaaaaaattgcctttataatttgctttttaatcaaacccctt
aagagtaattaagaacttaattgcaaaaatgacg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00036807-exon-sc0001518-1491911889:21340..23423 | TCONS_00036807-exon-sc0001518-1491911889:21340..23423 | Clytia hemisphaerica | exon |
| TCONS_00036807-exon-sc0001518-1510915933:21340..23423 | TCONS_00036807-exon-sc0001518-1510915933:21340..23423 | Clytia hemisphaerica | exon |
| TCONS_00036807-exon-sc0001518-1575043694:21340..23423 | TCONS_00036807-exon-sc0001518-1575043694:21340..23423 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001518 | supercontig | sc0001518:21340..23423 + |
Blast
The following BLAST results are available for this feature:
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