TCONS_00036799 (transcript) - C. hemisphaerica

Overview
NameTCONS_00036799
Unique NameTCONS_00036799
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length575

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00036799 ID=TCONS_00036799|Name=TCONS_00036799|organism=Clytia hemisphaerica|type=transcript|length=575bp
tgaaaaacaaatttaaagaaTGAAGCTCCACTGACTCTAGGATCAAAAca
accagacggtactaatcatCGAGAAACTTGATTCTCAAAGTAGTAATCCA
Aacggttggcagacgatatcatccaccaggatgcaattgaatattttcaa
tCTATGGACCTAGACGTGGGTTGGGTTTTTATCAGTTAGGGGCATCCGTA
CCCTGTGATCTAACTTAGGATCCTGTAGGGACCTAGCCGAGGTCGGAGAC
CTATTTCACCGGTTCAGtatgggcaaatttcagaaaaatacttagaaaac
agttaaaAACACTAGAGAAAGTCAGAGAATCAGGATAGAaaataggaaag
tagaaaacagggggaaaataagagaggatgcatgCTATATCATCTctgat
gatatcgtttgccaacaaTTCCAGACGGTAGTAATCAAACGTTTGATTGT
gatgatcgaagtaatcaataatgatcgataataatcgaaggtAGTCAGTG
ACCAATTATCAATTTTATTGGTGATCAAATACTCACTCAATTCcagatta
tggcattttctttAACCATTCTcga
Run BLAST on NCBI

transcript from alignment at sc0001518:7605..8179+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00036799 ID=TCONS_00036799|Name=TCONS_00036799|organism=Clytia hemisphaerica|type=transcript|length=575bp|location=Sequence derived from alignment at sc0001518:7605..8179+ (Clytia hemisphaerica)
tgaaaaacaaatttaaagaaTGAAGCTCCACTGACTCTAGGATCAAAAca
accagacggtactaatcatCGAGAAACTTGATTCTCAAAGTAGTAATCCA
Aacggttggcagacgatatcatccaccaggatgcaattgaatattttcaa
tCTATGGACCTAGACGTGGGTTGGGTTTTTATCAGTTAGGGGCATCCGTA
CCCTGTGATCTAACTTAGGATCCTGTAGGGACCTAGCCGAGGTCGGAGAC
CTATTTCACCGGTTCAGtatgggcaaatttcagaaaaatacttagaaaac
agttaaaAACACTAGAGAAAGTCAGAGAATCAGGATAGAaaataggaaag
tagaaaacagggggaaaataagagaggatgcatgCTATATCATCTctgat
gatatcgtttgccaacaaTTCCAGACGGTAGTAATCAAACGTTTGATTGT
gatgatcgaagtaatcaataatgatcgataataatcgaaggtAGTCAGTG
ACCAATTATCAATTTTATTGGTGATCAAATACTCACTCAATTCcagatta
tggcattttctttAACCATTCTcga
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_021739XLOC_021739Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00036799-exon-sc0001518-1491911889:7605..8179TCONS_00036799-exon-sc0001518-1491911889:7605..8179Clytia hemisphaericaexon
TCONS_00036799-exon-sc0001518-1510915933:7605..8179TCONS_00036799-exon-sc0001518-1510915933:7605..8179Clytia hemisphaericaexon
TCONS_00036799-exon-sc0001518-1575043694:7605..8179TCONS_00036799-exon-sc0001518-1575043694:7605..8179Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001518supercontigsc0001518:7605..8179 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.314502	0.464526	2.00122	2.36695	0	0.135831	0.373871	0.125897	0.378653	0.108184	0.230296	0.274564	0.298145	0	0.391196	0.280419	0.389563	0.444296	0	0.220786	0.345972	0.409896	0.125961	0.115084	0.416294	0.409433	0	0.153119	0	0.151028
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00036799 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top