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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00036795 ID=TCONS_00036795|Name=TCONS_00036795|organism=Clytia hemisphaerica|type=transcript|length=1235bp
TTATTATTGTCAAATACATCTGTTTAGCATCTTGCCAATTTGCAGGTGGA
AAGGGTAAATTTTCTGTCTCGATTACATAGTTAAAATGATCGTCAAGTTC
TACATCCATGGTATTCATTATCTCTCTTCCTTCTGAAATAATATCCCTTT
GGGCTAACAAATTTTCCACCCTTTCATTTATCAATTCATTCCCCTGATTT
TCGTATCCTGAAATGGTTGGAGCATGAAATAAAATATCTGGTATCCCTGG
CACGGTATCATTTCTAGTTTGTCCCCTTATGTAATGTGAATTCCACTCTA
ACGTCAGCCTGTCCAATTCGATCtgtaaaaattctgaaaaaacaaaccaa
acacACTCTTTATGTACGTAATTTGCCAAAACCAACGACTCTCTTTCGAc
caattctttaaaaaagtcGATGACCCATGCCATGTACATTCTCTTGAGGT
GTGACCAATAATTTTCAATTCGTTGATTAGCCACTGAAGAACCGTATGAA
TGAGATTTTACATTATGTGTAAGAAAACATTGGCAATCTGCCATGATACC
ATTTTCATTTCCAAGATCAGTTCTTAGTTTCGCCGGAGTAACTCCTAATT
TGATTACAGTTTGTAAAAAAAGACTTCCCGGAACAAGGGGATCATTGTTA
GATTTCACGACTTTTATCCAGAGGATTCTTCTTGAAAACCCATCAATACA
TCCATGGATTGGTAAACCATAGGGCTTTAATTTATCGTATCCATCTACAT
GCCAACAATGATTCGGACCAAGCGATGAATAATTTCGTCTATTAAGTCTT
CTTGCCCTCCGTTGTTCAGTACCCTCTGGGTCAATATCTCTCAACAGTGT
CATGACTAGATCCCTCTTAACTCTTATCCCATAACTGacttttagtctat
tccaaagtgCACGATAACCCTTTATACAGCCAGGACCccttatttcattt
tcaataattcgGCACAATGCCTCAACTGAAATGTTTCTTGTTCGTTTTTT
CAAGCCATAGATTTTTAAACGTCTTTTCAATGTTCTCAGACTCATGCCAA
TTCCATgataaattctcaaaaaaacaaCTATGTAGTCATATTTGTAATGC
TTATTAAAATAATGTTCTATAATAGCCCGCTCATCAGTCAATTCAGGTAC
AACAGGGGTGTTTTCAGTGGCGAAGGTCACTCCACAATTAGTACAAAAGA
AGGAATCTTCCTCAGCAGCAGTCCCGCACTGAGTG Run BLAST on NCBI protein sequence of TCONS_00036795-protein >TCONS_00036795-protein ID=TCONS_00036795-protein|Name=TCONS_00036795-protein|organism=Clytia hemisphaerica|type=polypeptide|length=411bp
TQCGTAAEEDSFFCTNCGVTFATENTPVVPELTDERAIIEHYFNKHYKYD
YIVVFLRIYHGIGMSLRTLKRRLKIYGLKKRTRNISVEALCRIIENEIRG
PGCIKGYRALWNRLKVSYGIRVKRDLVMTLLRDIDPEGTEQRRARRLNRR
NYSSLGPNHCWHVDGYDKLKPYGLPIHGCIDGFSRRILWIKVVKSNNDPL
VPGSLFLQTVIKLGVTPAKLRTDLGNENGIMADCQCFLTHNVKSHSYGSS
VANQRIENYWSHLKRMYMAWVIDFFKELVERESLVLANYVHKECVWFVFS
EFLQIELDRLTLEWNSHYIRGQTRNDTVPGIPDILFHAPTISGYENQGNE
LINERVENLLAQRDIISEGREIMNTMDVELDDHFNYVIETENLPFPPANW
QDAKQMYLTII Run BLAST on NCBI transcript from alignment at sc0001517:51336..52570 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00036795 ID=TCONS_00036795|Name=TCONS_00036795|organism=Clytia hemisphaerica|type=transcript|length=1235bp|location=Sequence derived from alignment at sc0001517:51336..52570 (Clytia hemisphaerica)
CACTCAGTGCGGGACTGCTGCTGAGGAAGATTCCTTCTTTTGTACTAATT
GTGGAGTGACCTTCGCCACTGAAAACACCCCTGTTGTACCTGAATTGACT
GATGAGCGGGCTATTATAGAACATTATTTTAATAAGCATTACAAATATGA
CTACATAGttgtttttttgagaatttatcATGGAATTGGCATGAGTCTGA
GAACATTGAAAAGACGTTTAAAAATCTATGGCTTGAAAAAACGAACAAGA
AACATTTCAGTTGAGGCATTGTGCcgaattattgaaaatgaaataaggGG
TCCTGGCTGTATAAAGGGTTATCGTGcactttggaatagactaaaagtCA
GTTATGGGATAAGAGTTAAGAGGGATCTAGTCATGACACTGTTGAGAGAT
ATTGACCCAGAGGGTACTGAACAACGGAGGGCAAGAAGACTTAATAGACG
AAATTATTCATCGCTTGGTCCGAATCATTGTTGGCATGTAGATGGATACG
ATAAATTAAAGCCCTATGGTTTACCAATCCATGGATGTATTGATGGGTTT
TCAAGAAGAATCCTCTGGATAAAAGTCGTGAAATCTAACAATGATCCCCT
TGTTCCGGGAAGTCTTTTTTTACAAACTGTAATCAAATTAGGAGTTACTC
CGGCGAAACTAAGAACTGATCTTGGAAATGAAAATGGTATCATGGCAGAT
TGCCAATGTTTTCTTACACATAATGTAAAATCTCATTCATACGGTTCTTC
AGTGGCTAATCAACGAATTGAAAATTATTGGTCACACCTCAAGAGAATGT
ACATGGCATGGGTCATCgacttttttaaagaattggTCGAAAGAGAGTCG
TTGGTTTTGGCAAATTACGTACATAAAGAGTgtgtttggtttgttttttc
agaatttttacaGATCGAATTGGACAGGCTGACGTTAGAGTGGAATTCAC
ATTACATAAGGGGACAAACTAGAAATGATACCGTGCCAGGGATACCAGAT
ATTTTATTTCATGCTCCAACCATTTCAGGATACGAAAATCAGGGGAATGA
ATTGATAAATGAAAGGGTGGAAAATTTGTTAGCCCAAAGGGATATTATTT
CAGAAGGAAGAGAGATAATGAATACCATGGATGTAGAACTTGACGATCAT
TTTAACTATGTAATCGAGACAGAAAATTTACCCTTTCCACCTGCAAATTG
GCAAGATGCTAAACAGATGTATTTGACAATAATAA Coding sequence (CDS) from alignment at sc0001517:51336..52570 >TCONS_00036795 ID=TCONS_00036795|Name=TCONS_00036795|organism=Clytia hemisphaerica|type=CDS|length=1233bp|location=Sequence derived from alignment at sc0001517:51336..52570 (Clytia hemisphaerica)
ACTCAGTGCGGGACTGCTGCTGAGGAAGATTCCTTCTTTTGTACTAATTG
TGGAGTGACCTTCGCCACTGAAAACACCCCTGTTGTACCTGAATTGACTG
ATGAGCGGGCTATTATAGAACATTATTTTAATAAGCATTACAAATATGAC
TACATAGttgtttttttgagaatttatcATGGAATTGGCATGAGTCTGAG
AACATTGAAAAGACGTTTAAAAATCTATGGCTTGAAAAAACGAACAAGAA
ACATTTCAGTTGAGGCATTGTGCcgaattattgaaaatgaaataaggGGT
CCTGGCTGTATAAAGGGTTATCGTGcactttggaatagactaaaagtCAG
TTATGGGATAAGAGTTAAGAGGGATCTAGTCATGACACTGTTGAGAGATA
TTGACCCAGAGGGTACTGAACAACGGAGGGCAAGAAGACTTAATAGACGA
AATTATTCATCGCTTGGTCCGAATCATTGTTGGCATGTAGATGGATACGA
TAAATTAAAGCCCTATGGTTTACCAATCCATGGATGTATTGATGGGTTTT
CAAGAAGAATCCTCTGGATAAAAGTCGTGAAATCTAACAATGATCCCCTT
GTTCCGGGAAGTCTTTTTTTACAAACTGTAATCAAATTAGGAGTTACTCC
GGCGAAACTAAGAACTGATCTTGGAAATGAAAATGGTATCATGGCAGATT
GCCAATGTTTTCTTACACATAATGTAAAATCTCATTCATACGGTTCTTCA
GTGGCTAATCAACGAATTGAAAATTATTGGTCACACCTCAAGAGAATGTA
CATGGCATGGGTCATCgacttttttaaagaattggTCGAAAGAGAGTCGT
TGGTTTTGGCAAATTACGTACATAAAGAGTgtgtttggtttgttttttca
gaatttttacaGATCGAATTGGACAGGCTGACGTTAGAGTGGAATTCACA
TTACATAAGGGGACAAACTAGAAATGATACCGTGCCAGGGATACCAGATA
TTTTATTTCATGCTCCAACCATTTCAGGATACGAAAATCAGGGGAATGAA
TTGATAAATGAAAGGGTGGAAAATTTGTTAGCCCAAAGGGATATTATTTC
AGAAGGAAGAGAGATAATGAATACCATGGATGTAGAACTTGACGATCATT
TTAACTATGTAATCGAGACAGAAAATTTACCCTTTCCACCTGCAAATTGG
CAAGATGCTAAACAGATGTATTTGACAATAATA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00036795-exon-sc0001517-1491911889:51336..52570 | TCONS_00036795-exon-sc0001517-1491911889:51336..52570 | Clytia hemisphaerica | exon |
| TCONS_00036795-exon-sc0001517-1510915933:51336..52570 | TCONS_00036795-exon-sc0001517-1510915933:51336..52570 | Clytia hemisphaerica | exon |
| TCONS_00036795-exon-sc0001517-1575043694:51336..52570 | TCONS_00036795-exon-sc0001517-1575043694:51336..52570 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001517 | supercontig | sc0001517:51336..52570 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR012337 | RNaseH-like_dom |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003676 | nucleic acid binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0003676 |
nucleic acid binding |
Blast
The following BLAST results are available for this feature:
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