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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00036794 ID=TCONS_00036794|Name=TCONS_00036794|organism=Clytia hemisphaerica|type=transcript|length=1746bp
ACTTTTATCATTTGGAGTCTTACAAAGTGGCCAGCCTTCCTTACAAGTGT
TGCACTGAAAAATagtcatttctaattttttgtgaaatttatcACCCAAA
AAGTCACCATTCTTTTCTGTATTTTGCCTTTTTTTAGCATGATTACGTTG
ACGCTGCTGAGcctttattttctctttattcttctcataatattcttttt
gtttttctttacgcaaatcttttgttttttcatgaTTACGTACGTTCACG
CTGCTGAGCCTTTATTTGCTCTTTATTCTTCtcataatattctttttgtt
tttctttacgcaaatcttttgttttggcGAAATATTCCTTACGCTTGTCT
TGTGTCTTTTCATAATAGATTTTTTTATCCTCACAGTTGTTTTTGTAATA
ATTCTTCCTTTTCAAATTAATACGTTCcttatttttttgcataatatCTT
TTATCGATCTCAGCTTTATCTTCctcaatttttttgcttttgcttcTTAA
TGGATAGTCCTTTAAATCATCTTTGCCCATCTTTCTTTTCCTCAAAGTGC
TAGCTatctcaaaatgtacaaaattagTTTGATCAGAAATGTTTTCCTTT
ATGTAAATGCAAAAAAACCATCCATCTTTATGAATCTCATAAAGTTGACG
CAAGCTTTcgcaacaaaatgtttttttcatgtAAATCATCAATATAGATC
CAATTATTATCATCTAATACAGCAGATGAAAAGTGGTCTCCTTTATGTCT
AACAAGACCTCTCAGGACATagttttgatcatttaaaaCCAAATTCTGTC
CAAATTCTATATCATATCACCTCCAAATTCTACAAGGTAGATTGTAGGTG
CAACAAACGACACTAGCGATGTATCGTGAGAAATATTCCCACAACTACTG
CACATTATTGATTTATCAATCATAACTGGGTTTAAAAGATTTTGCCAATT
ATGGAAGTCATCTAAAAGATTTAAGTTTAATTCTGAAATATAATTACGAA
CAATACTTCCTGAAAAAATCTGAGAAAACTCAGCATCGCAATCACGTTTT
TCAAAAGATGTGCAATTTGCAATTAAGAAGTCCCAAACAGGCTGACGAAT
AATAGataagttttcttcattttctctaTTGTCTGTGATGTCTGAATTTA
AAATGATACTGTAAGACTTCAAACAATTTGTTAACAAATCAAAGAATAAG
CTCTGTGTCTCACAATTTCAGCAATGTATGGGCCAAACGTAGAATATGCT
ACTTCCAAAAATGAGTCTACTGCACATGTATACACTGAATCTTGGTGTCT
ACACAAATTCATAAAATGTAAGTCTCTATTACCTCTATCATTTTTGTACA
CCTACCTCTCCACGTATCTCTCCTGATCTATCTGTTCTTCTTCTGAAGAA
AGCTCATCAATAATTTTCTGAGAAATTCCTTCATCAGAAACTGAAGAAGG
CTCAATAAATTTCTGAGAAATTCCTTCTGAAGAAGGCTCATCATGATTTT
TCTTAGACATTTTCATACCTAGATATTTGAATATTACCTTTTaccttttt
ctgttttcttgttCAGCAAAAAGACACAGCTAGCTACAAAAGCAAGtcat
tgtcaaatttcaacCATCGTGGATAGCTAGGAAAGCTACCTTCTCTGTCC
GTCCATAGCTAGGAAATCAATACAAGTAGCAGCAAAAGAGATATCGcgcg
cgaacattttttaaccgcgcgcggcccgctcagaatcggaCGAAAC Run BLAST on NCBI transcript from alignment at sc0001515:52395..54140- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00036794 ID=TCONS_00036794|Name=TCONS_00036794|organism=Clytia hemisphaerica|type=transcript|length=1746bp|location=Sequence derived from alignment at sc0001515:52395..54140- (Clytia hemisphaerica)
ACTTTTATCATTTGGAGTCTTACAAAGTGGCCAGCCTTCCTTACAAGTGT
TGCACTGAAAAATAGTCATTTCTAATTTTTTGTGAAATTTATCACCCAAA
AAGTCACCATTCTTTTCTGTATTTTGCCTTTTTTTAGCATGATTACGTTG
ACGCTGCTGAGCCTTTATTTTCTCTTTATTCTTCTCATAATATTCTTTTT
GTTTTTCTTTACGCAAATCTTTTGTTTTTTCATGATTACGTACGTTCACG
CTGCTGAGCCTTTATTTGCTCTTTATTCTTCTCATAATATTCTTTTTGTT
TTTCTTTACGCAAATCTTTTGTTTTGGCGAAATATTCCTTACGCTTGTCT
TGTGTCTTTTCATAATAGATTTTTTTATCCTCACAGTTGTTTTTGTAATA
ATTCTTCCTTTTCAAATTAATACGTTCCTTATTTTTTTGCATAATATCTT
TTATCGATCTCAGCTTTATCTTCCTCAATTTTTTTGCTTTTGCTTCTTAA
TGGATAGTCCTTTAAATCATCTTTGCCCATCTTTCTTTTCCTCAAAGTGC
TAGCTATCTCAAAATGTACAAAATTAGTTTGATCAGAAATGTTTTCCTTT
ATGTAAATGCAAAAAAACCATCCATCTTTATGAATCTCATAAAGTTGACG
CAAGCTTTCGCAACAAAATGTTTTTTTCATGTAAATCATCAATATAGATC
CAATTATTATCATCTAATACAGCAGATGAAAAGTGGTCTCCTTTATGTCT
AACAAGACCTCTCAGGACATAGTTTTGATCATTTAAAACCAAATTCTGTC
CAAATTCTATATCATATCACCTCCAAATTCTACAAGGTAGATTGTAGGTG
CAACAAACGACACTAGCGATGTATCGTGAGAAATATTCCCACAACTACTG
CACATTATTGATTTATCAATCATAACTGGGTTTAAAAGATTTTGCCAATT
ATGGAAGTCATCTAAAAGATTTAAGTTTAATTCTGAAATATAATTACGAA
CAATACTTCCTGAAAAAATCTGAGAAAACTCAGCATCGCAATCACGTTTT
TCAAAAGATGTGCAATTTGCAATTAAGAAGTCCCAAACAGGCTGACGAAT
AATAGATAAGTTTTCTTCATTTTCTCTATTGTCTGTGATGTCTGAATTTA
AAATGATACTGTAAGACTTCAAACAATTTGTTAACAAATCAAAGAATAAG
CTCTGTGTCTCACAATTTCAGCAATGTATGGGCCAAACGTAGAATATGCT
ACTTCCAAAAATGAGTCTACTGCACATGTATACACTGAATCTTGGTGTCT
ACACAAATTCATAAAATGTAAGTCTCTATTACCTCTATCATTTTTGTACA
CCTACCTCTCCACGTATCTCTCCTGATCTATCTGTTCTTCTTCTGAAGAA
AGCTCATCAATAATTTTCTGAGAAATTCCTTCATCAGAAACTGAAGAAGG
CTCAATAAATTTCTGAGAAATTCCTTCTGAAGAAGGCTCATCATGATTTT
TCTTAGACATTTTCATACCTAGATATTTGAATATTACCTTTTACCTTTTT
CTGTTTTCTTGTTCAGCAAAAAGACACAGCTAGCTACAAAAGCAAGTCAT
TGTCAAATTTCAACCATCGTGGATAGCTAGGAAAGCTACCTTCTCTGTCC
GTCCATAGCTAGGAAATCAATACAAGTAGCAGCAAAAGAGATATCGCGCG
CGAACATTTTTTAACCGCGCGCGGCCCGCTCAGAATCGGACGAAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00036794-exon-sc0001515-1575043694:52395..54140 | TCONS_00036794-exon-sc0001515-1575043694:52395..54140 | Clytia hemisphaerica | exon |
| TCONS_00036794-exon-sc0001515-1510915933:52395..54140 | TCONS_00036794-exon-sc0001515-1510915933:52395..54140 | Clytia hemisphaerica | exon |
| TCONS_00036794-exon-sc0001515-1491911889:52395..54140 | TCONS_00036794-exon-sc0001515-1491911889:52395..54140 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001515 | supercontig | sc0001515:52395..54140 - |
Blast
The following BLAST results are available for this feature:
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