TCONS_00036793 (transcript) - C. hemisphaerica

Overview
NameTCONS_00036793
Unique NameTCONS_00036793
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length779

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00036793 ID=TCONS_00036793|Name=TCONS_00036793|organism=Clytia hemisphaerica|type=transcript|length=779bp
TGAAAAGTGGTCTCCTTTATGTCTAACAAGACCTCTCAGGACATagtttt
gatcatttaaaaCCAAATTCTGTCCAAATTCTATATCATATCACCTCCAA
ATTCTACAAGGTAGATTGTAGGTGCAACAAACGACACTAGCGATGTATCG
TGAGAAATATTCCCACAACTACTGCACATTATTGATTTATCAATCATAAC
TGGGTTTAAAAGATTTTGCCAATTATGGAAGTCATCTAAAAGATTTAAGT
TTAATTCTGAAATATAATTACGAACAATACTTCCTGAAAAAATCTGAGAA
AACTCAGCATCGCAATCACGTTTTTCAAAAGATGTGCAATTTGCAATTAA
GAAGTCCCAAACAGGCTGACGAATAATAGataagttttcttcattttctc
taTTGTCTGTGATGTCTGAATTTAAAATGATACTGTAAGACTTCAAACAA
TTTGTTAACAAATCAAAGAATAAGCTCTGTGTCTCACAATTTCAGCAATG
TATGGGCCAAACGTAGAATATGCTACTTCCAAAAATGAGTCTACTGCACA
TGTATACACTGAATCTTGGTGTCTACACAAATTCATAAAATCAAAAAGAC
ACAGCTAGCTACAAAAGCAAGtcattgtcaaatttcaacCATCGTGGATA
GCTAGGAAAGCTACCTTCTCTGTCCGTCCATAGCTAGGAAATCAATACAA
GTAGCAGCAAAAGAGATATCGcgcgcgaacattttttaaccgcgcgcggc
ccgctcagaatcggaCGAAACATGAATAT
Run BLAST on NCBI

transcript from alignment at sc0001515:52387..53414-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00036793 ID=TCONS_00036793|Name=TCONS_00036793|organism=Clytia hemisphaerica|type=transcript|length=1028bp|location=Sequence derived from alignment at sc0001515:52387..53414- (Clytia hemisphaerica)
TGAAAAGTGGTCTCCTTTATGTCTAACAAGACCTCTCAGGACATAGTTTT
GATCATTTAAAACCAAATTCTGTCCAAATTCTATATCATATCACCTCCAA
ATTCTACAAGGTAGATTGTAGGTGCAACAAACGACACTAGCGATGTATCG
TGAGAAATATTCCCACAACTACTGCACATTATTGATTTATCAATCATAAC
TGGGTTTAAAAGATTTTGCCAATTATGGAAGTCATCTAAAAGATTTAAGT
TTAATTCTGAAATATAATTACGAACAATACTTCCTGAAAAAATCTGAGAA
AACTCAGCATCGCAATCACGTTTTTCAAAAGATGTGCAATTTGCAATTAA
GAAGTCCCAAACAGGCTGACGAATAATAGATAAGTTTTCTTCATTTTCTC
TATTGTCTGTGATGTCTGAATTTAAAATGATACTGTAAGACTTCAAACAA
TTTGTTAACAAATCAAAGAATAAGCTCTGTGTCTCACAATTTCAGCAATG
TATGGGCCAAACGTAGAATATGCTACTTCCAAAAATGAGTCTACTGCACA
TGTATACACTGAATCTTGGTGTCTACACAAATTCATAAAATGTAAGTCTC
TATTACCTCTATCATTTTTGTACACCTACCTCTCCACGTATCTCTCCTGA
TCTATCTGTTCTTCTTCTGAAGAAAGCTCATCAATAATTTTCTGAGAAAT
TCCTTCATCAGAAACTGAAGAAGGCTCAATAAATTTCTGAGAAATTCCTT
CTGAAGAAGGCTCATCATGATTTTTCTTAGACATTTTCATACCTAGATAT
TTGAATATTACCTTTTACCTTTTTCTGTTTTCTTGTTCAGCAAAAAGACA
CAGCTAGCTACAAAAGCAAGTCATTGTCAAATTTCAACCATCGTGGATAG
CTAGGAAAGCTACCTTCTCTGTCCGTCCATAGCTAGGAAATCAATACAAG
TAGCAGCAAAAGAGATATCGCGCGCGAACATTTTTTAACCGCGCGCGGCC
CGCTCAGAATCGGACGAAACATGAATAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_021735XLOC_021735Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00036793-exon-sc0001515-1575043694:52824..53414TCONS_00036793-exon-sc0001515-1575043694:52824..53414Clytia hemisphaericaexon
TCONS_00036793-exon-sc0001515-1575043694:52387..52574TCONS_00036793-exon-sc0001515-1575043694:52387..52574Clytia hemisphaericaexon
TCONS_00036793-exon-sc0001515-1510915933:52824..53414TCONS_00036793-exon-sc0001515-1510915933:52824..53414Clytia hemisphaericaexon
TCONS_00036793-exon-sc0001515-1510915933:52387..52574TCONS_00036793-exon-sc0001515-1510915933:52387..52574Clytia hemisphaericaexon
TCONS_00036793-exon-sc0001515-1491911889:52824..53414TCONS_00036793-exon-sc0001515-1491911889:52824..53414Clytia hemisphaericaexon
TCONS_00036793-exon-sc0001515-1491911889:52387..52574TCONS_00036793-exon-sc0001515-1491911889:52387..52574Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001515supercontigsc0001515:52387..53414 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0896	0.381886	0.364803	0.767668	0.834988	0.247153	0	0.220924	0.190595	0.403411	0.336569	0.476145	0.408069	0.259404	0.316552	0.326019	0.54782	0.604525	0.481177	0.652045	0.389927	0	0.14493	0.220385	0	0	0.556714	0.453462	0	0.453442
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00036793 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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