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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00036789 ID=TCONS_00036789|Name=TCONS_00036789|organism=Clytia hemisphaerica|type=transcript|length=1818bp
AAAAAGGCTTAAAACTCAATATTTGATTAAAACCTTAGCAAAGGTAATCC
TTACAGCTTAATTTTAACACCATAGGTACCTGGATTAATGAAATCTGCAT
TGAACATTCTGTTGTCTCCAGAATCGGAACCTTCAGACATTCAGAATTTT
CTTCCTGAAAGACTTCTGGCAATCAAAAAGGTTTCCGACGATGCCAAGGT
TAAATGTTAAGAGGTTGTGAAAGAATTTACGCATGTTATTGAAGTCATTG
AAGAAGTTCAACTGGGTGCGCTTGCCAAGCAGACCGATGTAAAAACTGCT
CTAGAGCATCTAAAACTCAATATCGATAATGCTAAGCGAGAGAGTGAACG
CTTGGATCAGGTTACAAAAGCAAACGAAAAGGCATTAAAAGAAATGGAAG
AGCAAGTCAAGAGTGCAAAGGAAGATTGGAAAGATGCAATGGCTTCTATG
CCAAGTGCTCAAGATTTGATGATGGCATCTGTGACTGAAAGCTTGACAAG
CATCGTTAAAACTGGAGCAAATGCTGCCGTTCAAATGGGAACCCAATATG
TAAACATGATGACTATGAGCGCCATGGGCGGAATGGGTGGTATGCTTCCT
CAACAAATGGGTGGTATGCAAAATCTTCAGCAAGCACCAAACCAAAATGT
GCAGTATCCAGCACTAGACACACCTGTAGAAAACCCTAAGGTTGATTTCT
TGCGAGATAAATACATGGTAAAGAACAGCCAAATCAATCTCTTCGCTAAT
CTATTGCTGAATTATTTTGACGACAGTGATGGTGATATCAAACTAAGAGA
AAAGGTGGTTGAAAAAGGAGACAAAGATATCCCAATTGGTAAAATCCTTG
AAGCTGAAACCTTTTTTAATATGATGCAAAAGAATATCAAAGGTATGGAC
GCTGGAGAccacaaaacaaccaaaaaccaACTACTGAGATTGATTGACAA
TGCCCTAAAAATAATTGAAGGAATCCAGAAGCTTCCTGAAAGCGTCGCAA
CGATTCAAAAACTCTTCGATCAagcagaaaaaatcatttcacaATCAGAC
ACGATCGGATCAAGTTTGAAAGTGAAAGCAGGAATCTCTCAATTCAATAA
TCCAAATCCAACTCTACCACCATCACAAGCACCATCAGGCAGCTCTGGCG
ATCTCTCTCAAACAATGAATGATAATGCTCACAAAAAGGTTGAAGCCTAT
CGCTCACAATTGGATTCTCTTCGAATTCGcgctgaagaagaaaaaaagcg
GTTTAATGCATCACAGCAAGCTTTAGCTGGAGAGTTGAGGAAGTtagaaa
atctcaaaagtggAGACGCAATGAGTCTTCGAATGATCGAAGTCTTAAAA
CAAGAAAAGAATGCACTTACTCAAGTCAAAGAAAGCTGGGCTGACCTTGT
TCAATTTTTTACCTTAATGTCCAACTTAATCAATTCAACACTGGCTCCTT
CATTGAATATGTTTGTTGCTGACTCAGAGAGGGTCGCTAAATCCAAATCA
GTCAAGAACATGGCAATAGAGGTCGTATATCAAACAGTTTATCAAGTTGT
CAAAGTCAACCATGTTGTCAACAATCTCGCTGGCTCgtataaagaaattt
caaagaaatatcTCATGCCGTTGTGTTTAAAGTTGGATGAAATCCTTATC
TTAGATGCTAATCAAGATAAAGCAAAGCTCGAAAAATTGAGATTAGATTT
AGGTGAAGAATGCAGAAAAGCTCATGAAGACATCAAGAGAATCGTAGACA
AGCACCACGAGGAGTTTCTTGCAAACTGCCACAAGAAAACATCAGCAATC
GATACCGAGATGAGGGCA Run BLAST on NCBI transcript from alignment at sc0001515:5894..12531- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00036789 ID=TCONS_00036789|Name=TCONS_00036789|organism=Clytia hemisphaerica|type=transcript|length=6638bp|location=Sequence derived from alignment at sc0001515:5894..12531- (Clytia hemisphaerica)
AAAAAGGCTTAAAACTCAATATTTGATTAAAACCTTAGCAAAGGTAATCC
TTACAGCTTAATTTTAACACCATAGGTACCTGGATTAATGAAATCTGCAT
TGAACATTCTGTTGTCTCCAGAATCGGAACCTTCAGACATTCAGAATTTT
CTTCCTGAAAGACTTCTGGCAATCAAAAAGGTTTCCGACGATGCCAAGGT
TAAATGTTAAGAGGTTGTGAAAGAATTTACGCATGTTATTGAAGTCATTG
AAGAAGTTCAACTGGGTGCGCTTGCCAAGCAGACCGATGTAAAAACTGCT
CTAGAGCATCTAAAACTCAATATCGATAATGCTAAGCGAGAGAGTGAACG
CTTGGATCAGGTTACAAAAGCGAACAAAAAGGCATTAAAAGACATGGAAG
GACAAGTCAAGAGTGCAAAGGAAGATTGGAAAGATGCAATGGTTTCTATG
CCAAGTGCTAAAGATTTGATGATGGCATCGCTGACTGAAAGCTTGACAAG
CATCGTTAAAACTGGAGCAAATGCTGCCGTTCAAATGGGAACCCAATATG
CAAACATGATGACCATGGGTGNTTCTATGCCAAGTGCTAAAGATTTGATG
ATGGCATCGCTGACTGAAAGCTTGACAAGCATCGTTAAAACTGGAGCAAA
TGCTGCCGTTCAAATGGGAACCCAATATGCAAACATGATGACCATGGGTG
GAATGGGTGGTATGCCTCCTCAACAAATGGGTGGTATGCAAAATCCTCAG
CAAGCACCAAACCAAAATGTGCAGTATCCAGCACAAGACACACTTGTAGA
AAACCCTAAGGTTGATTTTGTGCGAGACGAATACATGGTAAAGAACAGCC
AAATCAACCTCTTCGCTAATCTATTGCTGAATTATTTTGATGACAGTGAA
GGTGATATCAAACTAAGAGAAAAAGTGGTTGAAAAAGGAGACAAAGATAT
CCCAGTTGGTAAAATCCTTGAAGCTGAAACCTTTTTTAATATGATGAAAA
AGAATATCAAAGGTATGGACGCTGGAGATCACAAAACAACCAAAAACCAA
CTAATGAAATTGATTGACAACGCCCTCAAAACAATTGAAGGAATCCAGAA
GCTTCCTGAAAGCGTCGCAACGATTCAAAAACTCTTCGGTCAAGCAGAAA
AAATCATTTCTCAATCAGACACGATTGGATCAAGTTTGAAAGTGAAAGCA
GGAATCTCTCAATTCAATAATCCAAATCCAACTCTACCACCATCACAAGC
ACCATCAGGCAGCTCGGGCAATCTCTCTGNAGGAATCTCTCAATTCAATA
ATCCAAATCCAACTCTACCACCATCACAAGCACCATCGGAAAGCTCGGGC
AATCTCTCTCAAAACATGATTGATAATGCTCACAAAAAGGTTGAAGCCCA
TCGCTCAGAGTTGAATTCTCTTCGAATTCGCGCTGAAGAAGAAAAAAAGC
GGTTTGATGCATCAGAACAAGCTTTAGCAGAAGAATTGAGGAGATTGGAG
AATTTCAAAAGTGAAGATGCTACAAGTAAACGAATGATCGAAGTCTTGAA
CCAGGGATTAGATGCATTGAATAAAGTCAAACAAAAGTGGGTGGATCTTC
TTCAATTCTTTACGTCACTGTCTAACTTGATAAATTCAACACTGGCTCCC
TCATTGAATATGTTTGTTGCTGACGCAGAGAAAGTCGCTCAGTCCGCAAG
AGTAACTAACATGGCAAAGGAGACTGTCTACCAAACAGCTTATCAAGCAG
TCAAAGTCAACCATGTTGTCAACCATCTTGCTGGCTCGTATAAAGAAATT
TCAAAGAAATATCTCATGCCGTTGTGTTTAAAGTTGGATGAAATCCTTAT
TTTAGATGCTAATCAAGATAAAGCAAAGCTCGAAAAATTGAGATTAGAAT
TGGGCGCAGAATGCAGAAAAGCTCAGGAAGACATCAAGAGAATTGTAGAC
AAGCACCACGAGGAGTTTCTTGCAAACTGCCACAAGAAAACATCAGCAAT
CGATACAGAGATGAGGGCAATTGCACCTATTACCGAAGAGAAGAAGAAAC
AGATCCAAGCAAATGCACAGAAGATGGTAAAAGGAGAAGAACTTGATTTT
GGATTTTAAATTCCTTGAGACATTAATATTAAAAAAACATGAATCAATAA
AGGTCTTTTTCCAGAAGTTATCCTAAGAATTCACGAATGTGTTTAAATAT
CTTATTACTTTACGTTAATTTTTGGTTTTAATGTTAAAATATATTTTCTT
TGATATCAGCAATACAGTTGACGCTCTCGAAATCGATCTTCACAATAACC
TAAAAGCCTTTGCTGGATTATAAGAATCGAATGCGTCTATGAGACTTTTG
AAATAACTTCAAGTTATAAATTTCAAGTTAACCGAACTGCCATACTGTAG
AGTTTCAAATTGCTGCTTAATTTTCTTATAAAATTGATTTAGGCGATACG
ATTAGGATTTTTAAAGTTCGACTGTTTAACACAGCAAATTTTCAAAACCC
TTTTGTGAAAATTGAAATTTAATTTCTCACGATAGGTCAAATCCCTTTCG
ACACCTGATTGTTCATTGTAGGAGTAATTGATTTGGTTCTACCTCAATTT
TTTTCTTCTATAAGCATTATCTAATTTGCCTAATAATTTGTTTGGATGTA
ATAGCTTTTTATATCCTTTACCCAATATCTCAGTATTATGATATTTTTTT
TATTCTACGGCTGCATAATTTTCAAATTACATAGAAGGAGGCATTTTCAA
GGTTAAAATTGGTCCAACGTGCACATAAGATACCTCAAAATATTCGTAAG
ACGAAATGACATATAAAAATGTTTCACTTGTAGGACATCATTGATTACAT
CATAGAACTTCAATTATAGAACACTTTAATTAACAAAAGAAAATGAAAGA
AATGGCTTCAAAATTAATTCTTCAGAAACTCCCAATTCGAGTTGTATGAT
TTACAAAAGGGCGACAAATATTTTTTTAGGAGTGTGCTTTGTTCTCATTT
TTTTGTATGAAATCTTAATTTGTATCTTATGTTAAAATATATTTTACGAA
AAGAAAAACAATTGTTTGTTTTGTTTTTGGTTTTGATCTAGTCACACAGT
AGACACTCACTAATTCGAACTTCCATTATTGGAAACTTTCTATAATTCGA
ACAAAATCTTGGTCACCGTCAATTTTCAGAAGCAGGCGACCAGCCCATTT
CCCCGAAACATCTGTTTCCCTTTTCCAGGAGAGAGCTTTTTTCGAAAAAT
GGGGAAAGAGATTTTCTAGGAAAGACCTTTTCCTTAAAACTATCTGTCTC
CCCGCTCCAGCTGATGACGCCATCAGAGAGAAACATATCAAAATTTCTAG
GTGATGACATAATGAATTGGGAAACAGATATCTGTTTCCAAAAAGATGAT
ATTGCTTTTGAAACAGATTGAACTTTCTGGGGGAAAACAGATATGAATTA
CAAAAAGCAAGGAAAACAGATGAAAATTTGCAAAAGAGGGAAACAGATAT
CCTGCCCCCCCCCCTATTCCTCATGAGCTTGGGAGAACAGATCAAAGTTC
TAATTCTGAAAATTGTGGAAACAAACCAAATTTTCTAGGGAAGATACTTT
GAGATTAAAAATTTAGGTTTTGAGGAGAAACAGATCTTCATTTCTAGGAA
AAAGATTTTTGAAACTTTTAGCCAACAGATTAAGAGTTATGTTTACTAAT
TTAGCTACCGAAAAGAACATTTCGATATTTCTATTGACCATTCAAATAAT
TTTCGAATGTTTTGATGTTGATTTCGCCAAATTAAAGGAAGTGAAAAAGC
AAAACAAAGAAAATGACACAAATGAAGAGAAAGAAGTTTGTTGATAATTT
TCAAGTTGACGATAAACCATCACACTTTCACTCGTACAATATAGGATATA
TTTCTCTCGTTCAGAGTTTTCTATATTTTCTCGCGCGAAGGCTCAAAATA
TGACGAGAAATCGGAACTGGAATAATATATCCCATATTTACTCGGTACCG
TGCGATAACTATTACTAATTCAAGAAGGGAATAAAGTTTTTACTTTTATG
ACAATTCATACATATTTTGAGATTATGCAAAATTATAAGATACCCAAGAC
CAGGGCTAAAACTCATCAAATAACATCCAAATAGAAACGTTAATGATGTT
TGCCCTGGGATCGAAGGTGATTCGAGGTTTTGCTGAATTTTAAGGTATTG
CAACGTTAGAATAAAAAACACTGTTGTGACAAGTAGATTTTTCTGAACAA
CCGAACATGTCTATTTTCTTAAAATAATATTGCGCGTGGATGGTGTGGAA
ATTTAAAGAGTTGTAAGGGCATAGAGAAACCTTCTTATCTGCTTATTTCA
AAGAATACGCAATCCTTCTAAAAAACAAGACGAGGTTAAAAAGTTTTAGT
TAATTGAAATAAAACGGTTCTATTTAACACAATAGTTAAACAATTCAAGG
CAGATGATATTTCTTTTCATTTTTCCATTGATAGGTCAAGTTTTGAAATG
CAAAGTAGCGCGAAATTTAAAAAACTTATGTTATCGTAAAGGTCAAATAT
TTGAGGCATGATCGTTGCACTCTGATGTCAATTTGAGGTCCACTTATAGG
ACGACTTTAATGTGAAAAATGGTTAAACACTTGAGATCGGGAGGCTTTAA
AGTACTTTAGTATCAAAATTGAAGTTTCTTGAACCAAATTTCAATCAAAA
GGTTTTTTCTTCGTCATATTTAAAGGTTGTTAGGAATTTCCCCGCATTCA
AAGCATTATCTACATTTTTTTTAATTAAAGTACTCTGTGAACATTGGCAG
GTAAAGCGAGCATACTCTAGATTCGATATTTGAGTGAGACCTTATACAAA
AATATTTGTTTTGCGCTTAATACTTACAGCTTAATTTTAACACCATAGGT
ACCTGGATTAATGAAATCTGCATTGCTTATACTGTTGTCTCCAGCATCGG
AACCTTCAGACATTCAGAATTTTCCTGTGAGACTTATGGCAATCAAGCAA
GTTTCAGATAATGCCAAGGTTAAATGTGAAGAGGTCGTGAAAGGATTTAT
GCATGTCATTGAAGTCATTGACGAAGTCTTTATGGGGTTGGTTGTCCAAC
AGATCGATGTAAAATCTGCTCTAGAGAAACTAGAACTCAATATTGCTAAT
ACTAAGAGAGAAATCAAAAGATCGGATCAGGTTACAAAAGCAAACGAAAA
GGCATTAAAAGAAATGGAAGAGCAAGTCAAGAGTGCAAAGGAAGATTGGA
AAGATGCAATGGCTTCTATGCCAAGTGCTCAAGATTTGATGATGGCATCT
GTGACTGAAAGCTTGACAAGCATCGTTAAAACTGGAGCAAATGCTGCCGT
TCAAATGGGAACCCAATATGTAAACATGATGACTATGAGCGCCATGGGCG
GAATGGGTGGTATGCTTCCTCAACAAATGGGTGGTATGCAAAATCTTCAG
CAAGCACCAAACCAAAATGTGCAGTATCCAGCACTAGACACACCTGTAGA
AAACCCTAAGGTTGATTTCTTGCGAGATAAATACATGGTAAAGAACAGCC
AAATCAATCTCTTCGCTAATCTATTGCTGAATTATTTTGACGACAGTGAT
GGTGATATCAAACTAAGAGAAAAGGTGGTTGAAAAAGGAGACAAAGATAT
CCCAATTGGTAAAATCCTTGAAGCTGAAACCTTTTTTAATATGATGCAAA
AGAATATCAAAGGTATGGACGCTGGAGACCACAAAACAACCAAAAACCAA
CTACTGAGATTGATTGACAATGCCCTAAAAATAATTGAAGGAATCCAGAA
GCTTCCTGAAAGCGTCGCAACGATTCAAAAACTCTTCGATCAAGCAGAAA
AAATCATTTCACAATCAGACACGATCGGATCAAGTTTGAAAGTGAAAGCA
GGAATCTCTCAATTCAATAATCCAAATCCAACTCTACCACCATCACAAGC
ACCATCAGGCAGCTCTGGCGATCTCTCTCAAACAATGAATGATAATGCTC
ACAAAAAGGTTGAAGCCTATCGCTCACAATTGGATTCTCTTCGAATTCGC
GCTGAAGAAGAAAAAAAGCGGTTTAATGCATCACAGCAAGCTTTAGCTGG
AGAGTTGAGGAAGTTAGAAAATCTCAAAAGTGGAGACGCAATGAGTCTTC
GAATGATCGAAGTCTTAAAACAAGAAAAGAATGCACTTACTCAAGTCAAA
GAAAGCTGGGCTGACCTTGTTCAATTTTTTACCTTAATGTCCAACTTAAT
CAATTCAACACTGGCTCCTTCATTGAATATGTTTGTTGCTGACTCAGAGA
GGGTCGCTAAATCCAAATCAGTCAAGAACATGGCAATAGAGGTCGTATAT
CAAACAGTTTATCAAGTTGTCAAAGTCAACCATGTTGTCAACAATCTCGC
TGGCTCGTATAAAGAAATTTCAAAGAAATATCTCATGCCGTTGTGTTTAA
AGTTGGATGAAATCCTTATCTTAGATGCTAATCAAGATAAAGCAAAGCTC
GAAAAATTGAGATTAGATTTAGGTGAAGAATGCAGAAAAGCTCATGAAGA
CATCAAGAGAATCGTAGACAAGCACCACGAGGAGTTTCTTGCAAACTGCC
ACAAGAAAACATCAGCAATCGATACCGAGATGAGGGCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00036789-exon-sc0001515-1575043694:12172..12531 | TCONS_00036789-exon-sc0001515-1575043694:12172..12531 | Clytia hemisphaerica | exon |
| TCONS_00036789-exon-sc0001515-1575043694:5894..7351 | TCONS_00036789-exon-sc0001515-1575043694:5894..7351 | Clytia hemisphaerica | exon |
| TCONS_00036789-exon-sc0001515-1510915933:12172..12531 | TCONS_00036789-exon-sc0001515-1510915933:12172..12531 | Clytia hemisphaerica | exon |
| TCONS_00036789-exon-sc0001515-1510915933:5894..7351 | TCONS_00036789-exon-sc0001515-1510915933:5894..7351 | Clytia hemisphaerica | exon |
| TCONS_00036789-exon-sc0001515-1491911889:12172..12531 | TCONS_00036789-exon-sc0001515-1491911889:12172..12531 | Clytia hemisphaerica | exon |
| TCONS_00036789-exon-sc0001515-1491911889:5894..7351 | TCONS_00036789-exon-sc0001515-1491911889:5894..7351 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001515 | supercontig | sc0001515:5894..12531 - |
Blast
The following BLAST results are available for this feature:
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