TCONS_00036784 (transcript) - C. hemisphaerica

Overview
NameTCONS_00036784
Unique NameTCONS_00036784
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length753

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00036784 ID=TCONS_00036784|Name=TCONS_00036784|organism=Clytia hemisphaerica|type=transcript|length=753bp
ACCGTTTCTCTCCTTGGTTTGGTTCAATCTCTTCCTTCAAAATGAACTCT
TTAACATCTTCGACCTTTGGTTCTAGAATGAAGATAATCCATGATAATGC
AGGAGATTGATTGGAAGTCACGTAAAATGgtcttattttcatttcatttt
tctgtCAGTGAAAGCTCCTTTCATAAGTCCTGGGTACCAAATGAACGGGA
AAAAACTTTTGGGAAGAAGGCTAAAACagaagaattagggcaaaaggaAT
TAGCCCTGATTGGAGTAAGAAGGttcaagataaaaaaatttcaaatcaat
tagCGGGGGGATACTTATTAAGCACCCAAGAGTAGTGTGCAGGAAGGGTC
TGAGTCCTAATGTGTATCCCACATATTAAAATCTCTTTGAAGTCGCACTA
TTTACATCAATGGTCAGTCAGtcattcaaaaccaaaaagatTGAAGGTCA
CATTAAAATTatgaaagaaagaagtttaAAAAAACGCCACCACAGGCGAA
AACTTTGCTATTTACACTTTCTTCTTTGCTGGCCCATACCAAATATCTAT
ATCATGACACATACTATTTTTACCTATTTCTATACCGTTAAAGCGAGGAG
GGTCTTCTTCCGTTTTGTAAAGATTATCTTCGTCTCCATTTGAAATTGGA
TAGCCAAAATCTAGGAGAGATGGACGAAAAATGACACTAGAAAAGTGAAA
CCTTAGAAAATCTTAaagaaaagattcaaaaaacatttaaaaaccaATGG
ACA
Run BLAST on NCBI

transcript from alignment at sc0001514:35641..36393

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00036784 ID=TCONS_00036784|Name=TCONS_00036784|organism=Clytia hemisphaerica|type=transcript|length=753bp|location=Sequence derived from alignment at sc0001514:35641..36393 (Clytia hemisphaerica)
TGTCCATtggtttttaaatgttttttgaatcttttcttTAAGATTTTCTA
AGGTTTCACTTTTCTAGTGTCATTTTTCGTCCATCTCTCCTAGATTTTGG
CTATCCAATTTCAAATGGAGACGAAGATAATCTTTACAAAACGGAAGAAG
ACCCTCCTCGCTTTAACGGTATAGAAATAGGTAAAAATAGTATGTGTCAT
GATATAGATATTTGGTATGGGCCAGCAAAGAAGAAAGTGTAAATAGCAAA
GTTTTCGCCTGTGGTGGCGTTTTTTtaaacttctttctttcatAATTTTA
ATGTGACCTTCAatctttttggttttgaatgaCTGACTGACCATTGATGT
AAATAGTGCGACTTCAAAGAGATTTTAATATGTGGGATACACATTAGGAC
TCAGACCCTTCCTGCACACTACTCTTGGGTGCTTAATAAGTATCCCCCCG
ctaattgatttgaaatttttttatcttgaaCCTTCTTACTCCAATCAGGG
CTAATtccttttgccctaattcttctGTTTTAGCCTTCTTCCCAAAAGTT
TTTTCCCGTTCATTTGGTACCCAGGACTTATGAAAGGAGCTTTCACTGac
agaaaaatgaaatgaaaataagacCATTTTACGTGACTTCCAATCAATCT
CCTGCATTATCATGGATTATCTTCATTCTAGAACCAAAGGTCGAAGATGT
TAAAGAGTTCATTTTGAAGGAAGAGATTGAACCAAACCAAGGAGAGAAAC
GGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_021728XLOC_021728Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00036784-exon-sc0001514-1491911889:35641..36393TCONS_00036784-exon-sc0001514-1491911889:35641..36393Clytia hemisphaericaexon
TCONS_00036784-exon-sc0001514-1510915933:35641..36393TCONS_00036784-exon-sc0001514-1510915933:35641..36393Clytia hemisphaericaexon
TCONS_00036784-exon-sc0001514-1575043694:35641..36393TCONS_00036784-exon-sc0001514-1575043694:35641..36393Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001514supercontigsc0001514:35641..36393 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0.0694977	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.14004	0	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00036784 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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