TCONS_00036770 (transcript) - C. hemisphaerica

Overview
NameTCONS_00036770
Unique NameTCONS_00036770
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length429

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00036770 ID=TCONS_00036770|Name=TCONS_00036770|organism=Clytia hemisphaerica|type=transcript|length=429bp
TAAGGCCACTTCATTTTTGCATAATCTGTGAAACAAGAATGACACAACAA
TGCTAAACCTCAagGTCaaagaaacactggaaaaacgAATGTCTCGCACC
AACTTGTTGTACTAGCAAGAAGAGGGTGCTTGTTGATGAAAACATAATCA
ACAAGGACGATTAAAGATTCAAAGATTCAAAAGTCCATCCAAAGAAGATA
TTCACTCACTGGGTTGTCACTTTCTGCATGGTGTGTAATTTCTGCAAGTG
ATGTCAGGATATCAGGAACTAACTTCTTGATGTAATTCAATTGTTTATCT
AATCATTGGAATAAGGAAGATCCAAAATTTATAttaaaatgaAACAAGTT
GGTGGAACCTTGTCCATTGTTGGTGAGACTCTCCACTTCGATGCCAGCTG
GCTTTTTGCGTCCATCAACTTGTTATTTG
Run BLAST on NCBI

transcript from alignment at sc0001510:24749..30393-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00036770 ID=TCONS_00036770|Name=TCONS_00036770|organism=Clytia hemisphaerica|type=transcript|length=5645bp|location=Sequence derived from alignment at sc0001510:24749..30393- (Clytia hemisphaerica)
TAAGGCCACTTCATTTTTGCATAATCTGTGAAACAAGAATGACACAACAA
TGCTAAACCTCAAGGTAAATTTTCTTTTGAACTCGGATTTTCCTTACACT
GACCATCTCCCTCGATTACTTAAGCAGACCTCCAGCACAAAAAGTCGTTA
AATCTGAACCACTTACAGCAAATGATTTCAGCTTCTTATTTCTCAACAAC
TCAGAATCGGAGGCTTAAAGTTGACTGGAGAGTCACTAAAAAAAATAAAC
TTACTTTTCAAATCAGTTATTAACGTCGGGTTAAGTGCAGGTCGTTGATT
ACCCGTCTTTATATCTGTGGATCCCATTGCGCATGACCTATTGTGAGTTT
TCATTGTAAATACTTAGAAATCTTATCATTGCATTAGACCGCGGCAATCA
CAAATATCTTCATTTCGCTTGTTGGGTCTAAAAAGTGAGTCGGTCGGTTG
AAAATATTTTGGGGTGTTCTACTTCTCGCGTCCAACGAGAGGGGAATTTG
ATGTTCTGTTTAGGCGGCCATCGAAAAATTGTTCTATTCGCGCCACCCGC
CCTCATCATATTTTTTGCTGATTTTCCGGTGCGGAGAAGTGGAAAAAAAT
CCAGGAGAAGCAATTTGTTCTTTTAAAGTAATTTAGCTTTTTTCTTAATC
GCTCTGACGGCCATCGAAAAATTGTTTTGTTCGCGTCACCACCCGCCCCT
GAATTACTGCCGTAATTATAAAAAACCCGGGAATTTTTCCGCCCGCCCAT
CCGCCCGCATGCATTTTAAACACCCGTTGCGACGCGAACAGAGCATTTTT
TCGATGGCCGCCTTACCGTCGACCGCTCGCATGCTCTTGAATTTTTGAAC
GAAGGAAACGTCATTGACAGAAAAGGTCCGAAAAATTTAAAGACCCATTC
TACTCAATTTCGATAGTCGGTTGGGCGATGCAAAACAAAGATATTTGTGA
TTGCCACCTTGTGCTCTCGTTGTTTTGAAATGACTAGAAAAATACTTCAA
AGGCGTACAGACTTTGGTGAGCAGAAACTTTCACTAGGTCGAAAAAGTAG
AGAATTCAAATTCTTGGGGCATAAAACCAGTGTTTTGATCGCCATAAAGC
AAAATATTTACCTAGCTAGTTCGTCTTTGGTGAATAAGATATCCAGAATT
TCATTTAGGAAAGGTCGCCAATTAGTCAGGTTTGAAGACTGGACTTGTAA
CCTTTTCATATCATCCGGTGTCAAAATGATATGTGGGGCAAATTCATTCA
ATTGTTTAAACTGTAATAGAAAATAAGTGATTTATAAAAACATCAGAAAT
TTACTCAAGCTGAAAAACTTGATTTCACGAAATGGGGCTTAAATTCAGCA
AATTTAAAATCAGAAATATTTGTAACAATTTGGTTACTCATCTGCTACTT
TACATTCTTAAAGGTCAAAGAAACACTGGAAAAACGAATGTCTCGCACCA
ACTTGTTGTACTAGCAAGAAGAGGGTGCTTGTTGATGAAAACATAATCAA
CAAGGACGATTAAAGATTCAAAGATTCAAAAGTCCATCCAAAGAAGGTAC
AATTCCATTGATTACATTTCAATTTTTGCAAGACTTTACTTGTATAATTG
TTAAATACGCATGTGCTTATTATTTTGGTGAACCAGCAAGTTCCATAATT
TTTGCAGAGACTTACTTTTGCAAAAATGGTCAATCATGAAAATTGAGGTA
TACTATTTTCATCTTTGATTGAAAGGTGAATAATTAACAGGGAGTGACTT
ACCTTTGCCCCTATTGATTGGGGACTTTTAGAGGAAGGTAGCTTTGGTGC
GGAATATGCAGGCTGCTATAAAATAAGTTTTTAGGTGCTGAAATGCTTGG
AACTTTTCTCTTACTCTCAGGTGCCCAATACACGTACATGAAAAAATTTA
CCAAATTTTCAAAAGTAGAGTTCAAATCAAATGCTAGAATTTATAGTAAA
ACGTTCGAATTTACTTGTGTAGCATTTAAAATCTCCCACGATACATACAA
ATGTAATTAACGGCCTTTCTACACGTCTTACTTGAACAAAAAATAACAAT
TTTTTCCAGTATAAATTGGACAATGTTAGGTCAAAATAAACGTACAGGCT
GGAAAATTCCTCAAAATAAATAAACGTACAGGGTTTAATAAGGTGCGTAC
AGTTCCTGCCTGTGTTCCTTGACACAAAAAAATTAGGCACCCGAGAGTAG
CGCCTGTTTTATCAAAATTTTAAGGATTTTTACTGCTTGTCTTAATTGGT
TCCTTTTTTTAATTATTAAAGTTAACAAAGCTCTACAATGTTCTCTTACC
TCTACTATCAAGGGGGTTGTTTTTCTGATCACTTTTGGCTTGTTCACACT
AGATTTTGGAGTCGACATCTTATTGGAATACTAGGAAAAATCAAGAAATT
CCTATTAACCTTTCTTGTTTGATTCTTATTGACCTTTCACATTTGACCTT
TAAGGGTGACATCGAAAAATTGTCCTATTCGCGTCACCCGCCCGCATCAA
ATTTTCCGCTGATTTTCCGATGCGGAGAAAAATCTGGGAAAAGCAATTTG
TTCTTTTAAAGTATAGCTTTTTTCTCAATTGCTCTGACGACCATCGAAAA
ATTGTTTTGCTCGCTTTACCACCCATTGTACATTAGAGTACAATTAAATA
AGTGCAAAAACAGGATGGGTTAATACTAATAATTGACATTGTCATACCAA
ATTAGAATCAAGCAGCTCTTCATGTCCACGGTCTCATTCCTGACTAACTT
CAACATACTGAAATTAAATTGATAACATATTCAACAGTGTACAATTTTCC
ACTCCCGTTTTATGGCATAGAGGCTAGAAATTATTTGAAGGATTTCAAGT
CATTTATTACACAAATTTGACAAATTCAATATTTACTACAAAGTATTAAA
TGTATTTTATTAGTACAAAAAATTTTCTTAAATCTAGATATTCACTCACT
GGGTTGTCACTTTCTGCATGGTGTGTAATTTCTGCAAGTGATGTCAGGAT
ATCAGGAACTAACTTCTTGATGTAATTCAATTGTTTATCTAATCATTGGA
ATAAGGAAGATCCAAAATTTATATTAAAATGTAAGAAATTTTTTTTTAAT
TTGGTAGTTTGAAGCAAGGCTCTCCATTCAACTGTTAAATTAAATTATTT
TCTTTGAATGTCATCTCTACTATATCTCAATGTGTCTTTCACTTTCCATC
TTGGTAAAAAAGTGTTTTGAGTACCGTCTATTAAAATCAAAGTTACCTTT
CTGTTTAAGTTTCTCTTTCAACTCTCTTAACTCCTTGTTTGTTGCGAGAC
ATTTGCTACAAGACACTGTTAAGGAAACAAGAGTTAATTTTATTTTTGTA
AATGAATAAATTGNTGCTACAAGACACTGTTAAAGAAACAAGAGTTAATT
TTGTTTTTGTAAATGAATAAATTGCAAAGGAAATTTAATGGTGACTGATT
TAGTTAAGGCAAATTTTATTGAATAAGGTAAGGGTTTTTGATGGTACATA
CCTTTTTTTTTCCATATGGTGATAAACAGGTGATCTTTCTGAGAATTGAA
ACAACTTATATCAATATAACTATTTTGACAACATTTAAAATGATCAAGAG
TAAAGGGTCTCAAAAAACACTCCCCTGGTGAAAAGCTTCAGTTTAATAAT
TATTTACCTCAAGCCTTTTTTTTAGAAAACTACTTAAAAACGAAATCTAG
ATTACTTTTTCCATACCTTGAACAAAATCAGAATTAGGTAGTTTGAGAGG
AGCTGGAGCAAGATCCATGTTCCCTAAAATTAAAATATTGATGTGATGTC
AGGTCATGTTGAAAAATTCAAGGAATGAATAAAAGACCATGTACCGNTTA
GGTAGTTTGAGAGGAGCTGGAGCAAGATCCATGTTCCCTAAAATTAAAAT
ATTGATGTGATGTCAGGTCATGTTGAAAAATTGAAGGAATGGATAAAAGA
CCATGTATGCTAATAAAATAATAAATGCTAATAAATTTTTAATCTTCAAA
TTTTCTTTTTAATACAAGAATTGGTTAGTAATTTTGAAAGAAGCAATATG
TATATGAATAAATTATAATAACGTCTTACTCTGGGCTTTGGTGATTTCGG
AAAGGTGGAGTTGCTTGGTCCAGGACAGTTTTTTGTTTAGCTACTTGTGG
CTGTTGGAATTGTTGTGGTGGTGGTGGTGGTTTAATTTGTGTTGATTCTT
GGCTTGGTTGAAATTTGAATTGGGAATTATGTTGATATGATGGCTGGTAC
TGTTTGGGTGGTTTGAATTCTGTATTTTGCTGTTGGTCCACATTGGTTTG
GATGATTTCAAAGTCTGAGAAAATATTTATTTAATTCAAGTCAAGTCAAT
CTTCAATTTTCCATTAAAATCATTACATCATTAAGTTGTTTTCGTTCTTG
AAATTACAAATTCTCATTTATTGAACAAATTTATTGTACTGGCAAGCTAC
ACAATGTAAAAGGTTTATTAAAAATCCAAATTACACCAAAACAAATCAGA
GGGGTGTGTGCAGNGTTAAACATCCAAATTACACCAAAACAAATCAGAGG
GGTCTTATTTTATTCAAATATCGCAAGTTCCTACTAAAGTTACCTTCAGA
ATCATTCATGTCATTGGCTTGATAGTTAATGTCGTCCATGTCAACAAATT
TATCTAGTAAATCTCCACTCAGATTTATTTTGATTGATGCTTCTGTAGAA
AAAGAAAACTGTTTCAAAAACGTGAAGTTCCAAATTAGTTGTATAAAATG
AATGGCTAATGATGTTTTCTTTGTACTAATTATTTTTGAATCAATTAGAG
TCATAGCACAGATTTACTTTCCAACCTTCGATAAGTTAATATTAAGCAGA
TATTCGACAAGAAAAATCAGATGTCGAAAATTATTCAGTCAAGCTTGATG
ATATTCGACAAAGCAAAGCTGAGGGTCCAAAGTGCGTTTTGCTTAGAGGT
GGACAATAAAAGTTATTATACCTTTTTTTCCAGAATTTCCTGTGTGAGCA
TCTTTGTGGCTTTTGCCTTTGCCTGCTTAGTTTTAAGATTAGATTTAAAA
AAAGTAGTGAATGGGATGTGGATAGAATTTACCATTAATTATTTTTGCAC
AAATACTTAATGTGCAAGTACAGAGTTTATAATGACCATAACGTAGGAAT
TCTTCATGTACCTTTTTGTTTTTGAGCTGTTATGGCTTCAACGTCACCTG
TTAAAAAAATTGATAAAAGTTCTTGTCAATCCTTCTACTTTATTGGGATT
TAAATTGTGTTATCTGTAAGACATTTTCAAACAAGTCTCTAAAAATGTCG
AGCAACTTATCTTAAATGTTTACTGGCATCAGACAAGTGCTAATAATGTA
TATTTCAACAACAAACATGGATTACTTGGTAGTAAAATGCACAGGCACAA
AACCATGAAAGAGTTGTCCTCTAATATTGCCATCTGTGAAATTAAGTCCC
TGTCAAATCTTATAACTTCGCAGATGAGTTTTGATTACAAAAATCACGGC
CAGTATAATGAAATTTATTGTAGGCTTAACAGAATTAACTTCATTTTTAT
TTAAAGGAAACAAGTTGGTGGAACCTTGTCCATTGTTGGTGAGACTCTCC
ACTTCGATGCCAGCTGGCTTTTTGCGTCCATCAACTTGTTATTTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_021715XLOC_021715Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00036770-exon-sc0001510-1575043694:30330..30393TCONS_00036770-exon-sc0001510-1575043694:30330..30393Clytia hemisphaericaexon
TCONS_00036770-exon-sc0001510-1575043694:28848..28980TCONS_00036770-exon-sc0001510-1575043694:28848..28980Clytia hemisphaericaexon
TCONS_00036770-exon-sc0001510-1575043694:27314..27456TCONS_00036770-exon-sc0001510-1575043694:27314..27456Clytia hemisphaericaexon
TCONS_00036770-exon-sc0001510-1575043694:24749..24837TCONS_00036770-exon-sc0001510-1575043694:24749..24837Clytia hemisphaericaexon
TCONS_00036770-exon-sc0001510-1510915933:30330..30393TCONS_00036770-exon-sc0001510-1510915933:30330..30393Clytia hemisphaericaexon
TCONS_00036770-exon-sc0001510-1510915933:28848..28980TCONS_00036770-exon-sc0001510-1510915933:28848..28980Clytia hemisphaericaexon
TCONS_00036770-exon-sc0001510-1510915933:27314..27456TCONS_00036770-exon-sc0001510-1510915933:27314..27456Clytia hemisphaericaexon
TCONS_00036770-exon-sc0001510-1510915933:24749..24837TCONS_00036770-exon-sc0001510-1510915933:24749..24837Clytia hemisphaericaexon
TCONS_00036770-exon-sc0001510-1491911889:30330..30393TCONS_00036770-exon-sc0001510-1491911889:30330..30393Clytia hemisphaericaexon
TCONS_00036770-exon-sc0001510-1491911889:28848..28980TCONS_00036770-exon-sc0001510-1491911889:28848..28980Clytia hemisphaericaexon
TCONS_00036770-exon-sc0001510-1491911889:27314..27456TCONS_00036770-exon-sc0001510-1491911889:27314..27456Clytia hemisphaericaexon
TCONS_00036770-exon-sc0001510-1491911889:24749..24837TCONS_00036770-exon-sc0001510-1491911889:24749..24837Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001510supercontigsc0001510:24749..30393 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.320842	0.171849	0.484526	1.09404	0.249562	0.267243	0.439923	0.269186	0.107251	0	0	0	0.0366841	0	0	0.276515	0.221083	0	0	0.807116	0.692561	0.618095	0	0	0.43729	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00036770 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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