TCONS_00036766 (transcript) - C. hemisphaerica

Overview
NameTCONS_00036766
Unique NameTCONS_00036766
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1061

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00036766 ID=TCONS_00036766|Name=TCONS_00036766|organism=Clytia hemisphaerica|type=transcript|length=1061bp
ATgaatttatttctgatttctcCATGATAATCTTCTAGTCATGGAGACTT
ACCAGGGTTGGTACTTGGGCAAAAGGGGTATATATACAGGAATGTGCCAC
TGGTTAGGGTATATACCCTTTTTTCACCATAGGGTTCCCTTGCAAAAACA
CTGAAATAGAAAGATCAGTCCAATTTTGGGAATAAAACTTTGGGAATAAA
AAATAGAACATATAACAGTAAGAATTTcggcaacattttttcaaaaattg
agctGGAACACTCTGGTCATGATTTTACTGAATCATGATTGAAAATTCtg
gaaaatttaactttttaggGTAAAAATACCATTTATTTCTAAATAAAACA
TTGAAGTTGAAGGACTTGGCAGTTCTATTTCTTTGTTATTATTTGTTTTG
GCACGTCCAGGATCTAGCTCAGGGTCAATCTCTTTTAATTTGGTAGTGTG
AGGACAGCCAGTTCTACACCTTCTTTTCTTTTGCTTCTACATCTTTTTTG
TGTTTATTGTAATAAAATGCTCTGTTTTCAGAAGTGTCAGGCCATTCACT
ACTCAAAGGGATGAACTTTATTCTCTACATTAAAATTTTGGCTCAAAAGC
AACAACATCAAAAGTTAAAGCAGAATAAGCATTTGCAATCTGGACTCAGG
TCAAAGAGTGTTTGAAACCTGTCCTCAAGAAAAAGTCAAGCGGCAAGagt
aaatgtttgaaaaaattcaaagagaAGTTCAAGaaagagatttcaaaaat
gattgcATATGAAAGTATTGAGAACACCCTGGAAAAAGTTGGAAATGATT
GGTCATCTAAGTACAAAGTAACCTTAAAGCTTACTTTgaatgaaagtttc
aaaaaattagCTGATCTTACAGCTACTGCCGAGGACAATACATCGACAAA
TGATGACACAACTGGTACACCAGAAGAGAAAGATGATGAAGTTGAAGATG
AAGTATTGCACCAGCCCCGCAAAAAGTTCAAGTGGACAATACAGGATGAT
AGTGGGCGAAAGCTCTCAAATgcgaaaaatcaaatcaaatggtTAGAACA
TGTCAATAAAt
Run BLAST on NCBI

transcript from alignment at sc0001510:36080..38308+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00036766 ID=TCONS_00036766|Name=TCONS_00036766|organism=Clytia hemisphaerica|type=transcript|length=2229bp|location=Sequence derived from alignment at sc0001510:36080..38308+ (Clytia hemisphaerica)
ATgaatttatttctgatttctcCATGATAATCTTCTAGTCATGGAGACTT
ACCAGGGTTGGTACTTGGGCAAAAGGGGTATATATACAGGAATGTGCCAC
TGGTTAGGGTATATACCCTTTTTTCACCATAGGGTTCCCTTGCAAAAACA
CTGAAATAGAAAGATCAGTCCAATTTTGGGAATAAAACTTTGGGAATAAA
AAATAGAACATATAACAGTAAGAATTTcggcaacattttttcaaaaattg
agctGGAACACTCTGGTCATGATTTTACTGAATCATGATTGAAAATTCtg
gaaaatttaactttttaggGTAAAAATACCATTTATTTCTAAATAAAACA
TTGAAGTTGAAGGACTTGGCAGTTCTATTTCTTTGTTATTATTTGTTTTG
GCACGTCCAGGATCTAGCTCAGGGTCAATCTCTTTTAATTTGGTAGTGTG
AGGACAGCCAGTTCTACACCTTCTTTTCTTTTGCTTCTACATCTTTTTTG
TGTTTATTGTAATAAAATGCTCTGTTTTCAGAAGTGTCAGGCCATTCACT
ACTCAAAGGGATGAACTTTATTCTCTACATTAAAATTTTGGCTCAAAAGC
AACAACATCAAAAGTTAAAGCAGAATAAGCATTTGGTTGGTCTTtctcat
tttattttaatgtttttactgcctcttgttttgtttttctatgtTTGTAA
AACCAAGATTGGATAATTAGttcaaatcaagaaaatatACACATTAAGTC
TAGGCTAATCATGTCGATATTCAGCTACAATTTATCTTTGATACCACCGT
ATAATTATTAATTACCtttttttttgtattgtttCAGCAATCTGGACTCA
GGTCAAAGAGTGTTTGAAACCTGTCCTCAAGAAAAAGTCAAGCGGCAAGa
gtaaatgtttgaaaaaattcaaagagaAGTTCAAGGTTAGTATATTCATC
GTCAGATAAATTGAATCAGCTATTTATCCCTTGTTTATTTCTTTATGAAT
TTCTGCATATTGcagtaaattaactgaaaacaTTCCATTATTTCAATAGa
aagagatttcaaaaatgattgcATATGAAAGTATTGAGAACACCCTGGAA
AAAGTTGGAAATGATTGGTCATCTAAGTACAAAGTAAGTGATATTGTCAT
CTAAGTACAAAGTAAGTGATATTGCCTTGAGGGtcatttgttttggttaa
aagtGAGATCAATGATGAGttattaattgtttttttcattcttgatattt
tctacatttttctAGGTAACCTTAAAGCTTACTTTgaatgaaagtttcaa
aaaattagCTGATCTTACAGCTACTGCCGAGGTAAGCTTGGTCTTTTACA
GAGTTTCAGTTCCCTCCATCTGAGTTCTTTAAATCCCCAATCCCCCCTCG
CACTAACAGTTTCCTTTGGGATTCCctccccaggcttggccccctaaaAT
AAGTGAAATGTTTATTGAAAATGCTCTTGTACTGTATTGTCAAATTGTTT
ACTCGTTAAAAACAATGATGAATCTATGCATTTCATCCATTCTTTTTTGT
AGGACAATACATCGACAAATGATGACACAACTGGTACACCAGAAGAGAAA
GATGATGAAGTTGAAGATGAAGTAATTTCTTAGTTTCTAGTTCTTTTTTT
AAAGGCCTTTCCAATTTTCAACAGTTACAAGTAGTTTTCGTTACGCtctg
ttaaaaaaaaagagGTAGTTTTCGTTACGCTctgttaaaaaaaaaggaaa
taagtTTTAAAATCCTAAAGATGGTGAAATAgtatgatgatttttttggg
tTTTATGGAATCCTGATAAAACGATTCTGTATGACAAAGTAGTAATTGTG
AATGAAAACAGCTGTAATGGATTAAACAGTGTCAGAAGATTGCAATGTAA
AGAACGGAAGCAATTTCTACAAAAGCTGCATCTTCTAAAGACTGCCATTA
TtggaaatttaaattaaaacttCAATCTTTNAAAACAGCTGTAATGGATT
AAACAGTGTCAGAAGATTGCAATGTAAAGAACAGAAGCAATTTTTACAAA
AGCTGCATCTTCTAAAGACTGCCATTATtggaaatttaaattaaaacttC
AATCTTTGCTTATTTGTTAGGTATTGCACCAGCCCCGCAAAAAGTTCAAG
TGGACAATACAGGATGATAGTGGGCGAAAGCTCTCAAATgcgaaaaatca
aatcaaatggtTAGAACATGTCAATAAAt
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_021712XLOC_021712Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00036766-exon-sc0001510-1491911889:36080..36714TCONS_00036766-exon-sc0001510-1491911889:36080..36714Clytia hemisphaericaexon
TCONS_00036766-exon-sc0001510-1510915933:36080..36714TCONS_00036766-exon-sc0001510-1510915933:36080..36714Clytia hemisphaericaexon
TCONS_00036766-exon-sc0001510-1575043694:36080..36714TCONS_00036766-exon-sc0001510-1575043694:36080..36714Clytia hemisphaericaexon
TCONS_00036766-exon-sc0001510-1491911889:36917..37014TCONS_00036766-exon-sc0001510-1491911889:36917..37014Clytia hemisphaericaexon
TCONS_00036766-exon-sc0001510-1510915933:36917..37014TCONS_00036766-exon-sc0001510-1510915933:36917..37014Clytia hemisphaericaexon
TCONS_00036766-exon-sc0001510-1575043694:36917..37014TCONS_00036766-exon-sc0001510-1575043694:36917..37014Clytia hemisphaericaexon
TCONS_00036766-exon-sc0001510-1491911889:37129..37212TCONS_00036766-exon-sc0001510-1491911889:37129..37212Clytia hemisphaericaexon
TCONS_00036766-exon-sc0001510-1510915933:37129..37212TCONS_00036766-exon-sc0001510-1510915933:37129..37212Clytia hemisphaericaexon
TCONS_00036766-exon-sc0001510-1575043694:37129..37212TCONS_00036766-exon-sc0001510-1575043694:37129..37212Clytia hemisphaericaexon
TCONS_00036766-exon-sc0001510-1491911889:37345..37410TCONS_00036766-exon-sc0001510-1491911889:37345..37410Clytia hemisphaericaexon
TCONS_00036766-exon-sc0001510-1510915933:37345..37410TCONS_00036766-exon-sc0001510-1510915933:37345..37410Clytia hemisphaericaexon
TCONS_00036766-exon-sc0001510-1575043694:37345..37410TCONS_00036766-exon-sc0001510-1575043694:37345..37410Clytia hemisphaericaexon
TCONS_00036766-exon-sc0001510-1491911889:37632..37700TCONS_00036766-exon-sc0001510-1491911889:37632..37700Clytia hemisphaericaexon
TCONS_00036766-exon-sc0001510-1510915933:37632..37700TCONS_00036766-exon-sc0001510-1510915933:37632..37700Clytia hemisphaericaexon
TCONS_00036766-exon-sc0001510-1575043694:37632..37700TCONS_00036766-exon-sc0001510-1575043694:37632..37700Clytia hemisphaericaexon
TCONS_00036766-exon-sc0001510-1491911889:38200..38308TCONS_00036766-exon-sc0001510-1491911889:38200..38308Clytia hemisphaericaexon
TCONS_00036766-exon-sc0001510-1510915933:38200..38308TCONS_00036766-exon-sc0001510-1510915933:38200..38308Clytia hemisphaericaexon
TCONS_00036766-exon-sc0001510-1575043694:38200..38308TCONS_00036766-exon-sc0001510-1575043694:38200..38308Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001510supercontigsc0001510:36080..38308 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	3.66775	3.60678	2.25342	3.27355	1.52793	1.45098	2.00607	0.76479	1.16569	1.12709	0.0862194	0.036213	0.0764416	0	0	0	0	0	0	0	0.84358	1.79532	0	0	0	0.0672018
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00036766 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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